Wall clock time and date at job start Tue Mar 31 2020 23:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48492 * 109.47427 * 270.00523 * 3 2 1 5 5 H 1.48499 * 109.46727 * 30.00463 * 3 2 1 6 6 H 1.48496 * 109.47146 * 149.99947 * 3 2 1 7 7 C 1.38814 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00374 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99680 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.88661 * 23.65537 * 10 9 7 12 12 C 1.53952 * 113.74569 * 252.22936 * 10 9 7 13 13 C 1.53944 * 87.29684 * 270.25103 * 12 10 9 14 14 H 1.09001 * 113.74592 * 89.75204 * 13 12 10 15 15 N 1.46501 * 113.66465 * 220.79531 * 13 12 10 16 16 C 1.34782 * 119.99948 * 252.18713 * 15 13 12 17 17 O 1.21666 * 120.00001 * 0.02562 * 16 15 13 18 18 C 1.46932 * 119.99867 * 179.97438 * 16 15 13 19 19 C 1.36352 * 126.82379 * 359.97438 * 18 16 15 20 20 N 1.35580 * 109.74477 * 180.02562 * 19 18 16 21 21 H 0.97001 * 124.71758 * 180.26633 * 20 19 18 22 22 C 1.37695 * 110.56019 * 0.02562 * 20 19 18 23 23 N 1.32673 * 132.94297 * 180.02562 * 22 20 19 24 24 C 1.31606 * 121.68594 * 179.97438 * 23 22 20 25 25 C 1.38584 * 121.54703 * 0.02562 * 24 23 22 26 26 C 1.38344 * 119.32103 * 0.02562 * 25 24 23 27 27 C 1.39347 * 118.05506 * 0.02562 * 26 25 24 28 28 C 1.52904 * 86.78527 * 335.26803 * 13 12 10 29 29 C 1.52907 * 121.13758 * 259.18150 * 28 13 12 30 30 C 1.53955 * 86.78352 * 209.37678 * 29 28 13 31 31 C 1.52907 * 121.14182 * 150.61698 * 28 13 12 32 32 H 0.96994 * 119.99985 * 359.97438 * 1 2 3 33 33 H 0.96997 * 120.00109 * 0.02562 * 9 7 2 34 34 H 1.08995 * 113.58027 * 155.64788 * 12 10 9 35 35 H 1.09002 * 113.57951 * 24.85487 * 12 10 9 36 36 H 0.96993 * 119.99989 * 72.18632 * 15 13 12 37 37 H 1.08000 * 125.13328 * 0.04563 * 19 18 16 38 38 H 1.08000 * 119.22702 * 179.97438 * 24 23 22 39 39 H 1.07996 * 120.34124 * 179.97438 * 25 24 23 40 40 H 1.08000 * 120.97127 * 179.97438 * 26 25 24 41 41 H 1.08996 * 113.66343 * 323.84870 * 29 28 13 42 42 H 1.09000 * 113.66216 * 94.90670 * 29 28 13 43 43 H 1.09003 * 113.58063 * 270.12888 * 30 29 28 44 44 H 1.08996 * 113.58154 * 139.33311 * 30 29 28 45 45 H 1.09009 * 113.66409 * 265.09364 * 31 28 13 46 46 H 1.09000 * 113.66410 * 36.14679 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0667 -3.5640 0.4024 12 6 1.9957 -4.4087 -1.3425 13 6 0.7267 -5.1006 -0.8125 14 1 -0.1940 -4.5640 -1.0416 15 7 0.6526 -6.5260 -1.1426 16 6 -0.2242 -6.9581 -2.0705 17 8 -0.9539 -6.1644 -2.6343 18 6 -0.2982 -8.3876 -2.4020 19 6 0.4493 -9.3917 -1.8612 20 7 0.0968 -10.5763 -2.4186 21 1 0.4893 -11.4332 -2.1894 22 6 -0.8997 -10.3944 -3.3512 23 7 -1.5602 -11.2295 -4.1428 24 6 -2.4930 -10.8066 -4.9693 25 6 -2.8323 -9.4656 -5.0547 26 6 -2.1760 -8.5483 -4.2537 27 6 -1.1916 -9.0205 -3.3877 28 6 1.2657 -4.8230 0.5913 29 6 1.9582 -5.9181 1.4032 30 6 1.4401 -5.1939 2.6591 31 6 0.3200 -4.6164 1.7749 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 2.8311 -5.0910 -1.4993 35 1 1.8129 -3.7589 -2.1983 36 1 1.2346 -7.1587 -0.6934 37 1 1.2075 -9.2629 -1.1030 38 1 -3.0055 -11.5212 -5.5962 39 1 -3.6007 -9.1399 -5.7402 40 1 -2.4188 -7.4970 -4.2988 41 1 1.5261 -6.9085 1.2598 42 1 3.0442 -5.9108 1.3108 43 1 2.1269 -4.4388 3.0416 44 1 1.0789 -5.8697 3.4343 45 1 0.0974 -3.5690 1.9794 46 1 -0.5725 -5.2408 1.7359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078806880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:41 Heat of formation + Delta-G solvation = 95.917235 kcal Electronic energy + Delta-G solvation = -28903.182492 eV Core-core repulsion = 24988.148093 eV Total energy + Delta-G solvation = -3915.034399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.93748 -40.49851 -38.68215 -37.98827 -35.02736 -34.03432 -33.14241 -32.38774 -30.54596 -29.92074 -29.17578 -25.53576 -24.89695 -24.16930 -24.03464 -23.38018 -22.74432 -21.93349 -20.35129 -19.73837 -18.80061 -17.75531 -17.09594 -17.03206 -16.51534 -16.24724 -15.67182 -15.53015 -15.13183 -15.04627 -14.76142 -14.35902 -14.11283 -13.83286 -13.47143 -13.12925 -13.02093 -12.68445 -12.65640 -12.46392 -12.26728 -12.16248 -11.93636 -11.60052 -11.37977 -10.88745 -10.84228 -10.73875 -10.58104 -10.16634 -10.07779 -9.95974 -9.81784 -9.67297 -9.53427 -9.40415 -8.86190 -8.82560 -8.63864 -8.33920 -6.99299 -5.78560 -3.08316 0.63302 1.06171 1.80596 2.33948 3.34435 3.40129 3.43397 3.48333 3.50124 3.73733 4.17157 4.29030 4.48142 4.52356 4.72745 4.77830 4.89965 4.93484 4.96894 5.02909 5.18237 5.19670 5.28177 5.38432 5.46453 5.59713 5.66286 5.79450 5.93368 5.95656 5.98436 6.02102 6.06022 6.08579 6.11245 6.16777 6.25595 6.45129 6.57889 6.58237 6.67953 6.72811 6.80006 6.83856 6.88955 7.10871 7.68247 7.69541 7.75310 8.39514 8.45750 9.50677 10.06942 10.41365 11.43408 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.002522 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.985315 B =11098.750129 C =12144.471183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.700 5.700 10 C 0.197 3.803 11 H 0.068 0.932 12 C -0.182 4.182 13 C 0.141 3.859 14 H 0.115 0.885 15 N -0.712 5.712 16 C 0.583 3.417 17 O -0.537 6.537 18 C -0.209 4.209 19 C 0.112 3.888 20 N -0.567 5.567 21 H 0.423 0.577 22 C 0.276 3.724 23 N -0.499 5.499 24 C 0.135 3.865 25 C -0.198 4.198 26 C -0.016 4.016 27 C -0.110 4.110 28 C -0.124 4.124 29 C -0.115 4.115 30 C -0.133 4.133 31 C -0.126 4.126 32 H 0.256 0.744 33 H 0.387 0.613 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.391 0.609 37 H 0.186 0.814 38 H 0.162 0.838 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -24.702 -2.693 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.084 3.916 11 H 0.086 0.914 12 C -0.224 4.224 13 C 0.038 3.962 14 H 0.133 0.867 15 N -0.362 5.362 16 C 0.370 3.630 17 O -0.414 6.414 18 C -0.220 4.220 19 C -0.020 4.020 20 N -0.172 5.172 21 H 0.262 0.738 22 C 0.044 3.956 23 N -0.212 5.212 24 C -0.030 4.030 25 C -0.219 4.219 26 C -0.043 4.043 27 C -0.116 4.116 28 C -0.127 4.127 29 C -0.153 4.153 30 C -0.171 4.171 31 C -0.163 4.163 32 H 0.066 0.934 33 H 0.222 0.778 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.226 0.774 37 H 0.203 0.797 38 H 0.179 0.821 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.172 -24.896 -2.967 25.072 hybrid contribution 0.410 0.940 0.203 1.046 sum 0.582 -23.955 -2.764 24.121 Atomic orbital electron populations 1.69665 1.05098 1.25826 1.57014 1.24763 0.95506 0.97744 1.02624 0.86187 0.78617 0.83792 0.77539 1.21675 1.21788 1.20748 1.19240 0.91036 0.83824 1.43397 0.91014 1.42109 1.05832 0.99103 1.86731 1.20626 0.94488 0.84664 0.91847 0.91439 1.24298 0.96427 0.99692 1.02030 1.22410 0.99732 0.79082 0.95013 0.86709 1.45879 1.39390 1.09887 1.41030 1.17208 0.80177 0.86038 0.79538 1.90801 1.42739 1.55937 1.51967 1.20165 1.03855 0.93392 1.04598 1.22137 0.98829 0.83339 0.97668 1.41260 1.32406 1.09797 1.33699 0.73846 1.18342 0.93091 0.90200 0.93987 1.66479 1.09161 1.38480 1.07107 1.22459 0.92024 0.94559 0.93944 1.21991 1.03195 0.94162 1.02566 1.21225 0.91031 1.01182 0.90822 1.19443 0.99612 0.92788 0.99792 1.23621 0.98490 0.98383 0.92190 1.22523 0.99750 0.96635 0.96415 1.22737 0.99052 0.99552 0.95736 1.22631 0.96049 1.02454 0.95177 0.93379 0.77825 0.91283 0.90911 0.77426 0.79706 0.82093 0.84205 0.83559 0.90857 0.91433 0.90054 0.92341 0.89886 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -16.96 4.86 -52.99 -0.26 -17.21 16 10 C 0.20 3.74 4.36 -67.48 -0.29 3.44 16 11 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 12 C -0.18 -3.16 7.69 -25.75 -0.20 -3.35 16 13 C 0.14 2.31 4.04 -67.49 -0.27 2.04 16 14 H 0.12 2.30 7.46 -51.93 -0.39 1.92 16 15 N -0.71 -9.23 5.24 -54.60 -0.29 -9.51 16 16 C 0.58 8.78 7.80 -12.74 -0.10 8.68 16 17 O -0.54 -10.44 15.85 5.22 0.08 -10.35 16 18 C -0.21 -2.54 6.27 -103.36 -0.65 -3.19 16 19 C 0.11 0.88 11.34 -16.58 -0.19 0.69 16 20 N -0.57 -4.46 5.97 -11.97 -0.07 -4.53 16 21 H 0.42 1.96 8.96 -40.82 -0.37 1.59 16 22 C 0.28 3.14 8.41 -155.53 -1.31 1.83 16 23 N -0.50 -5.61 10.39 -12.29 -0.13 -5.73 16 24 C 0.14 1.24 11.14 -17.52 -0.20 1.05 16 25 C -0.20 -1.86 10.11 -39.41 -0.40 -2.26 16 26 C -0.02 -0.20 9.97 -39.13 -0.39 -0.59 16 27 C -0.11 -1.42 6.28 -104.94 -0.66 -2.08 16 28 C -0.12 -1.89 0.92 -154.72 -0.14 -2.04 16 29 C -0.12 -1.34 7.15 -26.28 -0.19 -1.52 16 30 C -0.13 -1.73 8.08 -25.75 -0.21 -1.94 16 31 C -0.13 -1.97 7.62 -26.29 -0.20 -2.17 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 33 H 0.39 10.13 7.61 -40.82 -0.31 9.82 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.39 3.66 5.92 -40.82 -0.24 3.42 16 37 H 0.19 0.63 7.38 -52.49 -0.39 0.24 16 38 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.15 1.90 7.55 -52.49 -0.40 1.51 16 41 H 0.07 0.68 7.03 -51.93 -0.36 0.31 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.57 7.58 -51.92 -0.39 1.18 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -34.82 381.58 -11.04 -45.86 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -6.20 Total: 14.18 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -5.63 Total: -8.54 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -0.02 Total: -64.05 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.82 -11.04 -45.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078806880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.773 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds