Wall clock time and date at job start Tue Mar 31 2020 23:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 102.99960 * 2 1 4 4 C 1.50692 * 109.47181 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00413 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00212 * 180.02562 * 4 3 2 7 7 C 1.47557 * 125.56216 * 359.97438 * 6 4 3 8 8 C 1.54100 * 104.72639 * 204.06806 * 7 6 4 9 9 C 1.52142 * 110.60665 * 81.46870 * 8 7 6 10 10 C 1.53326 * 109.44219 * 64.27912 * 9 8 7 11 11 N 1.46948 * 108.68373 * 53.38811 * 10 9 8 12 12 C 1.36930 * 120.56484 * 125.60162 * 11 10 9 13 13 H 1.08001 * 120.00149 * 207.97589 * 12 11 10 14 14 C 1.38817 * 120.00042 * 27.97024 * 12 11 10 15 15 N 1.31616 * 119.99930 * 17.46831 * 14 12 11 16 16 Si 1.86803 * 120.00000 * 197.46555 * 14 12 11 17 17 H 1.48501 * 109.46848 * 59.99966 * 16 14 12 18 18 H 1.48495 * 109.47232 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46967 * 300.00550 * 16 14 12 20 20 C 1.46928 * 118.86600 * 305.62709 * 11 10 9 21 21 C 1.52129 * 110.65961 * 205.60110 * 8 7 6 22 22 C 1.54348 * 102.65791 * 323.58955 * 8 7 6 23 23 H 1.08999 * 113.52621 * 157.64085 * 22 8 7 24 24 C 1.54077 * 108.66516 * 285.92757 * 22 8 7 25 25 O 1.42911 * 107.17729 * 134.72672 * 24 22 8 26 26 C 1.44730 * 110.91692 * 341.94439 * 25 24 22 27 27 C 1.46783 * 125.56598 * 180.02562 * 6 4 3 28 28 H 1.08997 * 111.54317 * 55.51254 * 27 6 4 29 29 H 1.08998 * 109.47522 * 59.99714 * 1 2 3 30 30 H 1.09004 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47124 * 299.99907 * 1 2 3 32 32 H 1.09006 * 109.46969 * 60.00172 * 3 2 1 33 33 H 1.09004 * 109.47115 * 300.00684 * 3 2 1 34 34 H 1.09000 * 110.38350 * 85.25399 * 7 6 4 35 35 H 1.08998 * 110.48119 * 322.92754 * 7 6 4 36 36 H 1.08992 * 109.47863 * 304.28885 * 9 8 7 37 37 H 1.09002 * 109.47537 * 184.26715 * 9 8 7 38 38 H 1.08999 * 109.60253 * 173.14648 * 10 9 8 39 39 H 1.08994 * 109.60351 * 293.46690 * 10 9 8 40 40 H 0.97000 * 119.99624 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.59609 * 174.08333 * 20 11 10 42 42 H 1.08998 * 109.59384 * 294.39058 * 20 11 10 43 43 H 1.08999 * 109.46258 * 175.69220 * 21 8 7 44 44 H 1.09002 * 109.47057 * 55.70006 * 21 8 7 45 45 H 1.08995 * 109.90187 * 254.11337 * 24 22 8 46 46 H 1.09004 * 109.89823 * 15.34138 * 24 22 8 47 47 H 1.09000 * 110.27590 * 242.11748 * 26 25 24 48 48 H 1.09005 * 110.11540 * 120.98873 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7193 1.9374 -0.0006 5 8 4.4403 0.9622 -0.0015 6 7 4.2574 3.1731 -0.0002 7 6 3.4995 4.4391 0.0003 8 6 4.4658 5.4745 -0.6072 9 6 4.4557 5.3896 -2.1262 10 6 3.0663 5.7724 -2.6496 11 7 2.6980 7.0817 -2.0931 12 6 2.3285 8.1100 -2.9184 13 1 2.4925 9.1329 -2.6132 14 6 1.7432 7.8377 -4.1473 15 7 1.2305 6.6486 -4.3830 16 14 1.6833 9.1589 -5.4665 17 1 3.0659 9.5763 -5.8122 18 1 1.0112 8.6204 -6.6763 19 1 0.9247 10.3305 -4.9595 20 6 2.7335 7.2686 -0.6362 21 6 4.1242 6.8758 -0.1237 22 6 5.8341 5.0275 -0.0503 23 1 6.6798 5.3737 -0.6445 24 6 5.9091 5.4111 1.4400 25 8 6.4342 4.2816 2.1406 26 6 6.3157 3.0788 1.3444 27 6 5.6930 3.4792 -0.0013 28 1 6.2034 3.0018 -0.8377 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8031 2.2371 0.8901 33 1 1.8030 2.2372 -0.8900 34 1 3.2320 4.7211 1.0187 35 1 2.6045 4.3481 -0.6152 36 1 4.6924 4.3714 -2.4349 37 1 5.1989 6.0750 -2.5335 38 1 3.0887 5.8308 -3.7377 39 1 2.3389 5.0226 -2.3385 40 1 0.8212 6.4585 -5.2417 41 1 2.5374 8.3138 -0.3969 42 1 1.9774 6.6382 -0.1683 43 1 4.8638 7.5811 -0.5027 44 1 4.1288 6.8953 0.9662 45 1 6.5700 6.2680 1.5698 46 1 4.9126 5.6483 1.8127 47 1 5.6730 2.3555 1.8461 48 1 7.3000 2.6409 1.1779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079221015.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:44 Heat of formation + Delta-G solvation = -41.215775 kcal Electronic energy + Delta-G solvation = -29672.738124 eV Core-core repulsion = 25854.908391 eV Total energy + Delta-G solvation = -3817.829732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.49601 -38.83376 -37.71161 -35.48585 -33.46309 -31.69826 -30.82339 -30.39119 -29.43348 -28.76000 -28.33187 -26.38740 -24.73802 -23.62687 -22.26102 -21.84142 -20.51053 -19.43326 -18.37967 -17.54926 -16.83505 -16.41848 -16.30648 -15.84021 -15.64992 -15.09736 -14.83636 -14.71594 -14.34011 -14.14756 -13.83735 -13.66551 -13.52944 -13.47494 -13.18464 -13.02614 -12.77097 -12.45641 -12.31997 -12.13734 -11.96098 -11.85093 -11.70296 -11.30199 -11.28434 -11.03472 -10.79807 -10.64206 -10.37819 -10.34950 -10.09846 -10.03263 -9.92626 -9.72284 -9.56863 -9.40402 -8.73886 -8.55768 -7.75127 -6.79015 -5.89900 -3.32256 1.34976 2.41830 2.50439 2.89141 3.31570 3.38330 3.39130 3.78321 4.02813 4.40075 4.46891 4.53121 4.76665 4.88449 4.90146 4.99546 4.99936 5.02175 5.07061 5.13317 5.19438 5.28461 5.31586 5.43377 5.49831 5.57264 5.63572 5.72853 5.73056 5.77167 5.80733 5.91485 5.96895 6.12570 6.19917 6.30200 6.45797 6.48378 6.53254 6.67145 6.78510 6.93095 7.18860 7.37651 7.51209 7.69796 8.02081 8.33999 9.10151 9.73418 10.28825 11.18544 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.004212 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.546078 B = 6646.317140 C = 8705.571145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.190 6.190 3 C -0.123 4.123 4 C 0.550 3.450 5 O -0.524 6.524 6 N -0.604 5.604 7 C 0.102 3.898 8 C -0.044 4.044 9 C -0.128 4.128 10 C 0.172 3.828 11 N -0.590 5.590 12 C -0.256 4.256 13 H 0.065 0.935 14 C 0.005 3.995 15 N -0.903 5.903 16 Si 0.901 3.099 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.145 3.855 21 C -0.125 4.125 22 C -0.123 4.123 23 H 0.112 0.888 24 C 0.058 3.942 25 O -0.387 6.387 26 C 0.049 3.951 27 C 0.114 3.886 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.016 0.984 40 H 0.255 0.745 41 H 0.056 0.944 42 H 0.017 0.983 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 -6.780 10.409 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.035 5.965 3 C -0.274 4.274 4 C 0.337 3.663 5 O -0.400 6.400 6 N -0.338 5.338 7 C -0.020 4.020 8 C -0.045 4.045 9 C -0.167 4.167 10 C 0.047 3.953 11 N -0.312 5.312 12 C -0.385 4.385 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.547 5.547 16 Si 0.731 3.269 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.209 1.209 20 C 0.018 3.982 21 C -0.164 4.164 22 C -0.142 4.142 23 H 0.130 0.870 24 C -0.019 4.019 25 O -0.307 6.307 26 C -0.028 4.028 27 C 0.010 3.990 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.034 0.966 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.035 0.965 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.855 -8.303 10.450 14.203 hybrid contribution -1.139 1.780 -1.046 2.357 sum 3.716 -6.523 9.405 12.034 Atomic orbital electron populations 1.23534 0.95619 1.06606 1.05190 1.87331 1.04887 1.06234 1.98062 1.23502 0.97230 0.99079 1.07563 1.19266 0.88885 0.81775 0.76378 1.90737 1.62073 1.37668 1.49533 1.48377 1.06896 1.05563 1.73011 1.22617 0.96277 0.82209 1.00898 1.20980 0.91202 0.95018 0.97303 1.22042 1.02522 1.00053 0.92083 1.20803 0.88635 0.85854 1.00049 1.44028 1.77434 1.10304 0.99452 1.19134 1.33729 0.87296 0.98341 0.91688 1.25015 0.97592 0.96834 0.99930 1.70000 1.39748 1.21522 1.23420 0.86390 0.77790 0.81278 0.81438 1.20997 1.21627 1.20852 1.20933 0.92206 0.98854 0.86196 1.22020 1.01109 0.94315 0.98987 1.23706 1.00324 0.92766 0.97408 0.86994 1.23297 0.99436 0.89268 0.89865 1.88449 1.83563 1.16304 1.42367 1.23586 1.00824 0.87884 0.90463 1.22681 0.82113 0.95879 0.98325 0.88347 0.90183 0.87841 0.90490 0.87265 0.86647 0.91325 0.89023 0.93161 0.91970 0.89244 0.96572 0.93517 0.92515 0.96504 0.91347 0.92222 0.89997 0.91249 0.90670 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 10.76 101.05 1.09 -0.17 16 2 S -0.19 -2.44 21.52 -107.50 -2.31 -4.75 16 3 C -0.12 -1.52 5.43 36.00 0.20 -1.33 16 4 C 0.55 8.11 7.42 -10.99 -0.08 8.03 16 5 O -0.52 -9.22 15.77 5.55 0.09 -9.13 16 6 N -0.60 -8.23 2.95 -162.50 -0.48 -8.71 16 7 C 0.10 1.36 4.20 -2.89 -0.01 1.35 16 8 C -0.04 -0.61 0.37 -154.11 -0.06 -0.66 16 9 C -0.13 -2.13 4.90 -27.00 -0.13 -2.26 16 10 C 0.17 3.66 5.01 -3.63 -0.02 3.64 16 11 N -0.59 -13.17 2.98 -172.14 -0.51 -13.68 16 12 C -0.26 -6.50 9.57 -15.06 -0.14 -6.65 16 13 H 0.07 1.63 7.89 -52.49 -0.41 1.22 16 14 C 0.01 0.13 4.90 -17.43 -0.09 0.05 16 15 N -0.90 -24.71 11.20 55.49 0.62 -24.09 16 16 Si 0.90 20.71 29.59 -169.99 -5.03 15.68 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.14 2.59 6.24 -3.64 -0.02 2.57 16 21 C -0.12 -1.76 4.44 -27.00 -0.12 -1.88 16 22 C -0.12 -1.48 3.51 -88.00 -0.31 -1.79 16 23 H 0.11 1.25 8.13 -51.93 -0.42 0.83 16 24 C 0.06 0.67 6.17 37.72 0.23 0.90 16 25 O -0.39 -5.27 11.34 -35.23 -0.40 -5.67 16 26 C 0.05 0.64 7.47 37.46 0.28 0.92 16 27 C 0.11 1.47 3.26 -66.11 -0.22 1.26 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 31 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.11 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.12 1.39 7.85 -51.92 -0.41 0.99 16 34 H 0.07 0.84 7.12 -51.93 -0.37 0.47 16 35 H 0.09 1.34 5.52 -51.93 -0.29 1.06 16 36 H 0.05 0.82 7.84 -51.93 -0.41 0.41 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 2.22 6.01 -51.93 -0.31 1.91 16 39 H 0.02 0.36 6.58 -51.93 -0.34 0.02 16 40 H 0.25 6.83 8.31 -40.82 -0.34 6.50 16 41 H 0.06 1.02 7.93 -51.93 -0.41 0.61 16 42 H 0.02 0.30 7.64 -51.93 -0.40 -0.10 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.71 5.83 -51.93 -0.30 0.40 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.81 4.90 -51.93 -0.25 0.55 16 47 H 0.08 1.07 7.34 -51.93 -0.38 0.69 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -29.68 372.48 -9.46 -39.14 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.65 Total: 1.62 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 0.60 Total: 3.98 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.37 Total: -46.48 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.31 Total: -14.80 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.31 Total: -4.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.68 -9.46 -39.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079221015.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.074 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds