Wall clock time and date at job start Tue Mar 31 2020 23:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48497 * 109.46957 * 269.99998 * 3 2 1 5 5 H 1.48504 * 109.47174 * 29.99673 * 3 2 1 6 6 H 1.48499 * 109.46983 * 149.99973 * 3 2 1 7 7 C 1.38812 * 120.00668 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99185 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.53002 * 109.47233 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 12 16 16 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 17 17 H 1.09002 * 109.47153 * 60.00089 * 16 10 9 18 18 N 1.46500 * 109.47473 * 299.99846 * 16 10 9 19 19 C 1.34777 * 120.00270 * 154.99797 * 18 16 10 20 20 O 1.21549 * 119.99601 * 0.02562 * 19 18 16 21 21 C 1.47889 * 120.00047 * 180.02562 * 19 18 16 22 22 N 1.32131 * 120.03453 * 359.97438 * 21 19 18 23 23 C 1.31987 * 122.77151 * 179.97438 * 22 21 19 24 24 C 1.37779 * 121.72409 * 0.02562 * 23 22 21 25 25 C 1.40387 * 118.72913 * 359.97438 * 24 23 22 26 26 C 1.40643 * 122.27007 * 180.02562 * 25 24 23 27 27 C 1.36654 * 117.94503 * 179.25837 * 26 25 24 28 28 C 1.39392 * 119.92189 * 0.70935 * 27 26 25 29 29 N 1.31210 * 121.85729 * 359.51407 * 28 27 26 30 30 C 1.33255 * 121.22164 * 359.97438 * 29 28 27 31 31 H 0.96997 * 120.00544 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 33 33 H 1.08992 * 109.47399 * 300.00063 * 12 10 9 34 34 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 35 35 H 1.09002 * 109.47075 * 300.00932 * 13 12 10 36 36 H 1.08993 * 109.47662 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 39 39 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 40 40 H 1.09000 * 109.47360 * 180.02562 * 15 14 13 41 41 H 0.97000 * 119.99491 * 335.00093 * 18 16 10 42 42 H 1.07995 * 119.13301 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.63203 * 179.97438 * 24 23 22 44 44 H 1.07997 * 121.02864 * 359.95527 * 26 25 24 45 45 H 1.08002 * 120.03544 * 180.20103 * 27 26 25 46 46 H 1.08000 * 119.07284 * 179.49353 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5651 -3.2062 -0.5888 12 6 4.2579 -2.9755 1.4380 13 6 5.0224 -4.3008 1.4380 14 6 6.4097 -4.0892 0.8288 15 6 6.2642 -3.5843 -0.6082 16 6 5.4996 -2.2585 -0.6080 17 1 6.0467 -1.5230 -0.0182 18 7 5.3602 -1.7751 -1.9839 19 6 6.3497 -1.0551 -2.5488 20 8 7.3579 -0.8072 -1.9167 21 6 6.2087 -0.5667 -3.9375 22 7 5.1133 -0.8362 -4.6254 23 6 4.9305 -0.4273 -5.8669 24 6 5.8815 0.3148 -6.5327 25 6 7.0727 0.6402 -5.8649 26 6 8.0926 1.3940 -6.4729 27 6 9.2090 1.6727 -5.7358 28 6 9.3154 1.1998 -4.4289 29 7 8.3627 0.4927 -3.8686 30 6 7.2443 0.1947 -4.5289 31 1 -0.4851 0.8400 -0.0004 32 1 3.8646 -0.3619 0.0014 33 1 4.8049 -2.2401 2.0278 34 1 3.2694 -3.1267 1.8719 35 1 4.4749 -5.0361 0.8482 36 1 5.1258 -4.6607 2.4616 37 1 6.9543 -5.0334 0.8283 38 1 6.9572 -3.3539 1.4185 39 1 5.7167 -4.3196 -1.1979 40 1 7.2526 -3.4340 -1.0424 41 1 4.5558 -1.9733 -2.4884 42 1 4.0115 -0.6811 -6.3742 43 1 5.7137 0.6399 -7.5488 44 1 7.9916 1.7513 -7.4870 45 1 10.0116 2.2519 -6.1682 46 1 10.2074 1.4212 -3.8617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085229006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:52 Heat of formation + Delta-G solvation = 43.414134 kcal Electronic energy + Delta-G solvation = -29621.208315 eV Core-core repulsion = 25703.897211 eV Total energy + Delta-G solvation = -3917.311104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47110 -39.58381 -38.26220 -37.62470 -34.10638 -33.90800 -33.73180 -31.71945 -31.29586 -30.81301 -29.25988 -28.05222 -25.59040 -24.32077 -23.78154 -23.38994 -21.96287 -20.90722 -20.33199 -19.73474 -18.78723 -17.97916 -17.72115 -17.35421 -16.34590 -15.85529 -15.36498 -15.09197 -14.86802 -14.55790 -14.42756 -14.27840 -14.00373 -13.59746 -13.45717 -13.40575 -13.24733 -13.03901 -12.81189 -12.55386 -12.44965 -12.20576 -12.15633 -11.31027 -11.04096 -10.95757 -10.84478 -10.79944 -10.55308 -10.31501 -10.11711 -10.06674 -10.02684 -9.69701 -9.59860 -9.55209 -9.22799 -8.88833 -8.72244 -8.49814 -7.23776 -5.74519 -3.09255 -0.25849 0.45327 1.44403 2.58848 3.21207 3.27440 3.41262 3.46789 3.49005 3.94650 3.99758 4.08528 4.22214 4.36817 4.48859 4.52677 4.62796 4.89005 4.98977 5.06736 5.11249 5.16123 5.25465 5.33506 5.41191 5.49442 5.53919 5.60940 5.66440 5.74631 5.79690 5.84082 5.94014 5.98046 6.05923 6.10546 6.31321 6.33003 6.44213 6.46400 6.48872 6.53579 6.85627 6.88228 7.06429 7.46319 7.68441 7.98216 8.01802 8.44492 8.56111 9.23140 9.96365 10.16081 11.43752 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.004095 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.252378 B = 6836.568668 C = 8474.634338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.009 3.991 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.239 4.239 8 H 0.092 0.908 9 N -0.746 5.746 10 C 0.178 3.822 11 H 0.061 0.939 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.138 3.862 17 H 0.085 0.915 18 N -0.692 5.692 19 C 0.562 3.438 20 O -0.504 6.504 21 C 0.146 3.854 22 N -0.436 5.436 23 C 0.080 3.920 24 C -0.128 4.128 25 C -0.084 4.084 26 C -0.064 4.064 27 C -0.157 4.157 28 C 0.128 3.872 29 N -0.418 5.418 30 C 0.105 3.895 31 H 0.258 0.742 32 H 0.361 0.639 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.168 0.832 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.257 -1.836 -13.928 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.709 3.291 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.109 0.891 9 N -0.388 5.388 10 C 0.068 3.932 11 H 0.079 0.921 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.032 3.968 17 H 0.103 0.897 18 N -0.343 5.343 19 C 0.345 3.655 20 O -0.377 6.377 21 C -0.007 4.007 22 N -0.149 5.149 23 C -0.066 4.066 24 C -0.148 4.148 25 C -0.092 4.092 26 C -0.090 4.090 27 C -0.178 4.178 28 C -0.046 4.046 29 N -0.126 5.126 30 C -0.020 4.020 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.250 0.750 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.160 0.840 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 17.965 -2.560 -12.269 21.905 hybrid contribution 0.609 2.167 -1.668 2.801 sum 18.575 -0.393 -13.937 23.225 Atomic orbital electron populations 1.69688 1.05024 1.25697 1.57737 1.24595 0.95096 0.96922 1.02070 0.86643 0.79330 0.85383 0.77755 1.21312 1.21819 1.20341 1.19044 0.80445 0.94624 1.42764 0.89068 1.42786 1.04004 1.01860 1.90160 1.20441 0.89180 0.89555 0.93988 0.92134 1.22182 1.00496 0.95500 0.99170 1.21577 0.95626 0.98430 1.00123 1.21480 0.97476 1.00534 0.95676 1.21876 1.00418 0.96670 0.97290 1.21408 0.97953 0.95560 0.81839 0.89737 1.45851 1.20322 1.52976 1.15190 1.17565 0.84118 0.79386 0.84443 1.90831 1.28767 1.56397 1.61738 1.21642 0.88749 0.94941 0.95363 1.67419 1.20481 1.18612 1.08365 1.22662 0.99331 0.94716 0.89887 1.22386 0.93004 0.98270 1.01189 1.18973 0.96273 0.99174 0.94744 1.21410 0.92298 0.95181 1.00159 1.22111 0.99016 1.00713 0.95995 1.23323 0.97306 0.91655 0.92353 1.68314 0.99405 1.09975 1.34891 1.19489 0.94064 0.97736 0.90713 0.93149 0.80573 0.92540 0.91092 0.92165 0.92543 0.92294 0.91978 0.91777 0.91796 0.75004 0.81469 0.83620 0.83787 0.84004 0.81850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 23.00 27.74 -169.99 -4.71 18.28 16 4 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 5 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.28 -7.05 6.52 56.52 0.37 -6.68 16 7 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 9 N -0.75 -17.60 4.76 -53.43 -0.25 -17.85 16 10 C 0.18 3.39 2.29 -67.93 -0.16 3.23 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C -0.13 -2.29 5.50 -26.73 -0.15 -2.44 16 13 C -0.12 -1.64 5.92 -26.73 -0.16 -1.79 16 14 C -0.11 -1.48 5.92 -26.73 -0.16 -1.63 16 15 C -0.12 -1.79 5.50 -26.70 -0.15 -1.93 16 16 C 0.14 2.38 1.98 -67.91 -0.13 2.24 16 17 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 18 N -0.69 -12.27 4.90 -54.71 -0.27 -12.54 16 19 C 0.56 10.45 7.77 -12.31 -0.10 10.35 16 20 O -0.50 -10.33 14.87 5.32 0.08 -10.25 16 21 C 0.15 2.47 6.81 -82.55 -0.56 1.91 16 22 N -0.44 -6.69 9.48 -9.55 -0.09 -6.78 16 23 C 0.08 0.93 11.13 -17.65 -0.20 0.73 16 24 C -0.13 -1.24 9.93 -38.94 -0.39 -1.63 16 25 C -0.08 -0.98 5.75 -106.79 -0.61 -1.60 16 26 C -0.06 -0.53 9.95 -39.25 -0.39 -0.92 16 27 C -0.16 -1.22 10.03 -39.72 -0.40 -1.62 16 28 C 0.13 1.36 11.14 -17.39 -0.19 1.16 16 29 N -0.42 -6.43 8.49 -10.75 -0.09 -6.53 16 30 C 0.10 1.61 6.61 -84.62 -0.56 1.05 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.36 8.86 5.66 -40.82 -0.23 8.63 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.41 7.32 7.95 -40.82 -0.32 7.00 16 42 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -35.53 378.14 -9.87 -45.40 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.46 Total: 12.60 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -4.55 Total: 0.49 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: 0.07 Total: -72.23 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.71 Total: 18.28 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.53 -9.87 -45.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085229006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.816 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds