Wall clock time and date at job start Tue Mar 31 2020 23:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00439 * 2 1 4 4 H 1.48501 * 109.47080 * 269.99879 * 3 2 1 5 5 H 1.48490 * 109.47266 * 30.00166 * 3 2 1 6 6 H 1.48499 * 109.47089 * 150.00195 * 3 2 1 7 7 C 1.38816 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00216 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00275 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.01736 * 33.60605 * 10 9 7 12 12 C 1.54266 * 110.03338 * 272.16602 * 10 9 7 13 13 C 1.54884 * 104.19564 * 264.32571 * 12 10 9 14 14 C 1.54888 * 102.75094 * 322.05591 * 13 12 10 15 15 H 1.09000 * 110.59433 * 279.20908 * 14 13 12 16 16 C 1.52995 * 110.48784 * 156.62192 * 14 13 12 17 17 N 1.46499 * 109.47171 * 70.22670 * 16 14 13 18 18 C 1.34778 * 120.00073 * 180.02562 * 17 16 14 19 19 O 1.21550 * 120.00005 * 359.97438 * 18 17 16 20 20 C 1.47866 * 119.99870 * 180.02562 * 18 17 16 21 21 C 1.40614 * 119.75638 * 359.97101 * 20 18 17 22 22 C 1.35734 * 120.83679 * 180.02562 * 21 20 18 23 23 C 1.40710 * 120.08107 * 0.02562 * 22 21 20 24 24 N 1.33795 * 120.85788 * 179.97438 * 23 22 21 25 25 C 1.31326 * 119.75972 * 180.02562 * 24 23 22 26 26 C 1.39756 * 120.71760 * 0.02562 * 25 24 23 27 27 N 1.31283 * 120.67044 * 0.02562 * 26 25 24 28 28 C 1.33821 * 119.73396 * 359.97438 * 27 26 25 29 29 C 1.38415 * 119.75187 * 179.97438 * 20 18 17 30 30 C 1.53876 * 110.03520 * 154.99745 * 10 9 7 31 31 H 0.97006 * 119.99664 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99715 * 359.97438 * 9 7 2 33 33 H 1.09008 * 110.48443 * 23.00348 * 12 10 9 34 34 H 1.08995 * 110.49015 * 145.51175 * 12 10 9 35 35 H 1.09005 * 110.75660 * 203.73860 * 13 12 10 36 36 H 1.09000 * 110.75763 * 80.37434 * 13 12 10 37 37 H 1.08997 * 109.47234 * 310.22738 * 16 14 13 38 38 H 1.09001 * 109.47175 * 190.21960 * 16 14 13 39 39 H 0.97001 * 120.00211 * 359.97438 * 17 16 14 40 40 H 1.08002 * 119.58616 * 0.02803 * 21 20 18 41 41 H 1.07993 * 119.96093 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.64001 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.66710 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.25454 * 359.72517 * 29 20 18 45 45 H 1.09002 * 110.03172 * 0.02562 * 30 10 9 46 46 H 1.08991 * 110.03519 * 238.56966 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2024 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0577 -3.6569 -0.0005 11 1 2.9830 -3.5536 0.5663 12 6 2.3694 -4.0872 -1.4488 13 6 1.2210 -5.0613 -1.8111 14 6 0.9991 -5.8353 -0.4879 15 1 1.7385 -6.6287 -0.3792 16 6 -0.4164 -6.4136 -0.4367 17 7 -0.5335 -7.5049 -1.4070 18 6 -1.6999 -8.1671 -1.5390 19 8 -2.6546 -7.8592 -0.8526 20 6 -1.8178 -9.2690 -2.5180 21 6 -0.7100 -9.6213 -3.3090 22 6 -0.7940 -10.6287 -4.2148 23 6 -2.0000 -11.3361 -4.3731 24 7 -2.1003 -12.3314 -5.2615 25 6 -3.2365 -12.9769 -5.3918 26 6 -4.3450 -12.6355 -4.6122 27 7 -4.2720 -11.6621 -3.7343 28 6 -3.1251 -10.9893 -3.5830 29 6 -3.0180 -9.9460 -2.6489 30 6 1.1866 -4.7684 0.6105 31 1 -0.4850 0.8401 0.0004 32 1 0.3553 -2.3880 0.0002 33 1 2.3609 -3.2234 -2.1136 34 1 3.3326 -4.5950 -1.4971 35 1 1.5263 -5.7389 -2.6085 36 1 0.3227 -4.5119 -2.0925 37 1 -1.1370 -5.6327 -0.6796 38 1 -0.6172 -6.7947 0.5645 39 1 0.2283 -7.7505 -1.9551 40 1 0.2196 -9.0835 -3.1945 41 1 0.0659 -10.8877 -4.8147 42 1 -3.3154 -13.7798 -6.1099 43 1 -5.2710 -13.1779 -4.7330 44 1 -3.8652 -9.6751 -2.0363 45 1 0.2187 -4.3639 0.9066 46 1 1.6894 -5.2051 1.4733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086871145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:24 Heat of formation + Delta-G solvation = 36.981737 kcal Electronic energy + Delta-G solvation = -27634.808994 eV Core-core repulsion = 23717.218961 eV Total energy + Delta-G solvation = -3917.590034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.90507 -40.12057 -38.28834 -37.37629 -35.33178 -35.01667 -33.35568 -31.66418 -31.08226 -30.58326 -29.01634 -27.46312 -26.13608 -25.04897 -24.15159 -23.19425 -22.66802 -21.52756 -20.10127 -19.36092 -18.92052 -18.70223 -17.56870 -17.11369 -16.87086 -16.17796 -15.72668 -15.40220 -15.14594 -15.04637 -14.82304 -14.63630 -14.30597 -14.21711 -13.71440 -13.46994 -13.23304 -12.97297 -12.66321 -12.42440 -12.26713 -12.22371 -12.16720 -12.07398 -11.42541 -11.22112 -10.85495 -10.75500 -10.60646 -10.51496 -10.30127 -10.25586 -10.14278 -9.90808 -9.63907 -9.62199 -9.54744 -9.21989 -9.04680 -8.87777 -6.93137 -5.75619 -3.03975 -0.42642 -0.08938 1.34163 1.89761 2.84833 2.93964 3.43594 3.48018 3.48867 3.50652 3.55150 3.63101 3.72618 4.21448 4.31336 4.37951 4.51194 4.59416 4.62386 4.84786 4.85933 4.92666 5.06442 5.18598 5.34508 5.49030 5.54025 5.54664 5.59705 5.69679 5.71696 5.73672 5.88892 5.99075 6.02981 6.06066 6.09429 6.19048 6.31589 6.33021 6.45447 6.64681 6.71764 6.73711 6.90547 7.09423 7.17803 7.28051 7.71767 7.97183 8.43615 9.54216 10.13810 10.47575 11.46929 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.001752 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.228819 B =15982.238219 C =16205.816057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.104 4.104 15 H 0.075 0.925 16 C 0.125 3.875 17 N -0.717 5.717 18 C 0.554 3.446 19 O -0.529 6.529 20 C -0.112 4.112 21 C -0.073 4.073 22 C -0.085 4.085 23 C 0.092 3.908 24 N -0.428 5.428 25 C 0.084 3.916 26 C 0.074 3.926 27 N -0.416 5.416 28 C 0.069 3.931 29 C -0.013 4.013 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.178 0.822 43 H 0.178 0.822 44 H 0.156 0.844 45 H 0.073 0.927 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -29.131 -10.248 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.123 4.123 15 H 0.093 0.907 16 C 0.002 3.998 17 N -0.369 5.369 18 C 0.340 3.660 19 O -0.406 6.406 20 C -0.117 4.117 21 C -0.094 4.094 22 C -0.105 4.105 23 C -0.032 4.032 24 N -0.142 5.142 25 C -0.091 4.091 26 C -0.102 4.102 27 N -0.130 5.130 28 C -0.054 4.054 29 C -0.034 4.034 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.235 0.765 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.195 0.805 43 H 0.195 0.805 44 H 0.174 0.826 45 H 0.092 0.908 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.665 -28.532 -9.580 30.320 hybrid contribution 0.470 0.724 -0.464 0.980 sum -3.195 -27.809 -10.044 29.739 Atomic orbital electron populations 1.69663 1.05081 1.25618 1.57689 1.24743 0.95497 0.97665 1.03109 0.86211 0.78651 0.83996 0.77460 1.21811 1.21823 1.20807 1.19256 0.91001 0.84234 1.42582 0.91228 1.42543 1.05660 0.99693 1.88267 1.20799 0.94145 0.86094 0.92594 0.93367 1.23120 0.95977 0.98646 1.00946 1.22511 1.00070 0.97434 0.95081 1.22249 0.94504 0.97861 0.97663 0.90656 1.21616 0.97879 0.88407 0.91864 1.45953 1.13312 1.35910 1.41676 1.18078 0.83258 0.81907 0.82762 1.90824 1.37618 1.66673 1.45481 1.20059 0.94624 0.98163 0.98844 1.21071 0.98138 0.96181 0.93980 1.20689 0.96317 0.94859 0.98609 1.19690 0.94940 0.94640 0.93931 1.68745 1.25304 1.04636 1.15481 1.24186 0.88987 0.98161 0.97796 1.24145 1.00312 0.93971 0.91752 1.68701 1.23745 1.04664 1.15851 1.19457 0.90543 0.97528 0.97914 1.21264 0.97689 0.90458 0.93949 1.22468 1.01528 0.95385 0.96632 0.93535 0.78256 0.90954 0.93318 0.93011 0.91218 0.90584 0.91251 0.76527 0.84157 0.83526 0.80523 0.80483 0.82616 0.90834 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.60 5.08 -52.34 -0.27 -17.86 16 10 C 0.17 3.29 3.55 -66.81 -0.24 3.05 16 11 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 12 C -0.15 -2.42 6.54 -25.08 -0.16 -2.58 16 13 C -0.11 -1.54 6.19 -24.74 -0.15 -1.69 16 14 C -0.10 -1.26 2.89 -88.96 -0.26 -1.52 16 15 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 16 C 0.13 1.54 4.96 -4.04 -0.02 1.52 16 17 N -0.72 -7.42 5.40 -61.25 -0.33 -7.75 16 18 C 0.55 6.79 7.77 -12.32 -0.10 6.69 16 19 O -0.53 -8.57 16.30 5.32 0.09 -8.48 16 20 C -0.11 -1.12 5.87 -105.00 -0.62 -1.74 16 21 C -0.07 -0.54 9.44 -39.58 -0.37 -0.91 16 22 C -0.09 -0.66 9.95 -39.54 -0.39 -1.05 16 23 C 0.09 0.88 6.59 -84.72 -0.56 0.32 16 24 N -0.43 -3.71 10.46 -10.74 -0.11 -3.83 16 25 C 0.08 0.48 11.21 -17.20 -0.19 0.28 16 26 C 0.07 0.45 11.22 -17.22 -0.19 0.25 16 27 N -0.42 -4.03 10.46 -10.81 -0.11 -4.15 16 28 C 0.07 0.72 6.58 -84.81 -0.56 0.16 16 29 C -0.01 -0.14 9.56 -38.68 -0.37 -0.51 16 30 C -0.12 -1.85 6.14 -25.61 -0.16 -2.01 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.38 10.03 7.52 -40.82 -0.31 9.72 16 33 H 0.07 1.41 8.04 -51.92 -0.42 0.99 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 37 H 0.08 1.10 8.02 -51.93 -0.42 0.69 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.40 2.96 6.42 -40.82 -0.26 2.70 16 40 H 0.14 0.63 6.35 -52.49 -0.33 0.30 16 41 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.18 0.27 8.06 -52.48 -0.42 -0.15 16 43 H 0.18 0.36 8.06 -52.49 -0.42 -0.07 16 44 H 0.16 1.76 7.61 -52.49 -0.40 1.36 16 45 H 0.07 1.24 7.31 -51.93 -0.38 0.86 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -34.94 383.87 -10.11 -45.05 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.28 Total: 8.25 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -4.59 Total: -6.94 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.10 Total: -60.98 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.94 -10.11 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086871145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.030 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds