Wall clock time and date at job start Tue Mar 31 2020 23:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00439 * 2 1 4 4 H 1.48501 * 109.47080 * 269.99879 * 3 2 1 5 5 H 1.48490 * 109.47266 * 30.00166 * 3 2 1 6 6 H 1.48499 * 109.47089 * 150.00195 * 3 2 1 7 7 C 1.38816 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00216 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00275 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.01736 * 33.60605 * 10 9 7 12 12 C 1.54266 * 110.03338 * 272.16602 * 10 9 7 13 13 C 1.54884 * 104.19564 * 264.32571 * 12 10 9 14 14 C 1.54888 * 102.75094 * 322.05591 * 13 12 10 15 15 H 1.09000 * 110.59433 * 279.20908 * 14 13 12 16 16 C 1.52995 * 110.48784 * 156.62192 * 14 13 12 17 17 N 1.46499 * 109.47171 * 70.22670 * 16 14 13 18 18 C 1.34778 * 120.00073 * 180.02562 * 17 16 14 19 19 O 1.21550 * 120.00005 * 359.97438 * 18 17 16 20 20 C 1.47866 * 119.99870 * 180.02562 * 18 17 16 21 21 C 1.40614 * 119.75638 * 359.97101 * 20 18 17 22 22 C 1.35734 * 120.83679 * 180.02562 * 21 20 18 23 23 C 1.40710 * 120.08107 * 0.02562 * 22 21 20 24 24 N 1.33795 * 120.85788 * 179.97438 * 23 22 21 25 25 C 1.31326 * 119.75972 * 180.02562 * 24 23 22 26 26 C 1.39756 * 120.71760 * 0.02562 * 25 24 23 27 27 N 1.31283 * 120.67044 * 0.02562 * 26 25 24 28 28 C 1.33821 * 119.73396 * 359.97438 * 27 26 25 29 29 C 1.38415 * 119.75187 * 179.97438 * 20 18 17 30 30 C 1.53876 * 110.03520 * 154.99745 * 10 9 7 31 31 H 0.97006 * 119.99664 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99715 * 359.97438 * 9 7 2 33 33 H 1.09008 * 110.48443 * 23.00348 * 12 10 9 34 34 H 1.08995 * 110.49015 * 145.51175 * 12 10 9 35 35 H 1.09005 * 110.75660 * 203.73860 * 13 12 10 36 36 H 1.09000 * 110.75763 * 80.37434 * 13 12 10 37 37 H 1.08997 * 109.47234 * 310.22738 * 16 14 13 38 38 H 1.09001 * 109.47175 * 190.21960 * 16 14 13 39 39 H 0.97001 * 120.00211 * 359.97438 * 17 16 14 40 40 H 1.08002 * 119.58616 * 0.02803 * 21 20 18 41 41 H 1.07993 * 119.96093 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.64001 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.66710 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.25454 * 359.72517 * 29 20 18 45 45 H 1.09002 * 110.03172 * 0.02562 * 30 10 9 46 46 H 1.08991 * 110.03519 * 238.56966 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2024 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0577 -3.6569 -0.0005 11 1 2.9830 -3.5536 0.5663 12 6 2.3694 -4.0872 -1.4488 13 6 1.2210 -5.0613 -1.8111 14 6 0.9991 -5.8353 -0.4879 15 1 1.7385 -6.6287 -0.3792 16 6 -0.4164 -6.4136 -0.4367 17 7 -0.5335 -7.5049 -1.4070 18 6 -1.6999 -8.1671 -1.5390 19 8 -2.6546 -7.8592 -0.8526 20 6 -1.8178 -9.2690 -2.5180 21 6 -0.7100 -9.6213 -3.3090 22 6 -0.7940 -10.6287 -4.2148 23 6 -2.0000 -11.3361 -4.3731 24 7 -2.1003 -12.3314 -5.2615 25 6 -3.2365 -12.9769 -5.3918 26 6 -4.3450 -12.6355 -4.6122 27 7 -4.2720 -11.6621 -3.7343 28 6 -3.1251 -10.9893 -3.5830 29 6 -3.0180 -9.9460 -2.6489 30 6 1.1866 -4.7684 0.6105 31 1 -0.4850 0.8401 0.0004 32 1 0.3553 -2.3880 0.0002 33 1 2.3609 -3.2234 -2.1136 34 1 3.3326 -4.5950 -1.4971 35 1 1.5263 -5.7389 -2.6085 36 1 0.3227 -4.5119 -2.0925 37 1 -1.1370 -5.6327 -0.6796 38 1 -0.6172 -6.7947 0.5645 39 1 0.2283 -7.7505 -1.9551 40 1 0.2196 -9.0835 -3.1945 41 1 0.0659 -10.8877 -4.8147 42 1 -3.3154 -13.7798 -6.1099 43 1 -5.2710 -13.1779 -4.7330 44 1 -3.8652 -9.6751 -2.0363 45 1 0.2187 -4.3639 0.9066 46 1 1.6894 -5.2051 1.4733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086871145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:22 Heat of formation + Delta-G solvation = 11.919515 kcal Electronic energy + Delta-G solvation = -27635.895774 eV Core-core repulsion = 23717.218961 eV Total energy + Delta-G solvation = -3918.676813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.49695 -41.05705 -39.51924 -38.10918 -36.38565 -35.86160 -35.01694 -32.73384 -31.98745 -31.70940 -30.23301 -28.87722 -27.00241 -25.72329 -25.45694 -24.79138 -23.37130 -22.38479 -21.18329 -20.74744 -19.76437 -19.40081 -19.08681 -18.19965 -17.64172 -17.11612 -16.70582 -16.56849 -16.27206 -15.96687 -15.74174 -15.67725 -15.23322 -15.17155 -14.90558 -14.84312 -14.52090 -14.19667 -13.61274 -13.56993 -13.15522 -12.95703 -12.91113 -12.84384 -12.82042 -12.75701 -12.46620 -12.35105 -12.14537 -11.95484 -11.70473 -11.61109 -11.48321 -11.39158 -11.16782 -10.88256 -10.29127 -10.19389 -10.03188 -9.73503 -8.94825 -7.92434 -5.19604 -1.05339 -0.65178 0.68659 1.26227 1.46655 1.48141 1.56549 1.95630 2.14789 2.57464 2.92251 2.97343 3.09414 3.16889 3.39457 3.50276 3.67478 3.74841 3.81804 3.86198 3.87932 3.97474 4.10151 4.23004 4.41477 4.44662 4.55641 4.61397 4.66457 4.70301 4.71567 4.81777 4.85166 4.90604 4.97245 5.01050 5.10633 5.14887 5.17097 5.25512 5.29920 5.47080 5.49344 5.53705 5.60448 5.69766 6.18172 6.31195 6.43188 6.63910 7.08370 7.35690 8.16852 8.36916 9.31250 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.001752 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.228819 B =15982.238219 C =16205.816057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.160 3.840 11 H 0.044 0.956 12 C -0.139 4.139 13 C -0.108 4.108 14 C -0.083 4.083 15 H 0.115 0.885 16 C 0.132 3.868 17 N -0.699 5.699 18 C 0.553 3.447 19 O -0.579 6.579 20 C -0.117 4.117 21 C -0.067 4.067 22 C -0.081 4.081 23 C 0.076 3.924 24 N -0.449 5.449 25 C 0.097 3.903 26 C 0.084 3.916 27 N -0.455 5.455 28 C 0.047 3.953 29 C -0.032 4.032 30 C -0.118 4.118 31 H 0.248 0.752 32 H 0.370 0.630 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.418 0.582 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.223 0.777 43 H 0.218 0.782 44 H 0.135 0.865 45 H 0.049 0.951 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 -32.212 -12.079 34.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.052 3.948 11 H 0.062 0.938 12 C -0.179 4.179 13 C -0.145 4.145 14 C -0.102 4.102 15 H 0.133 0.867 16 C 0.008 3.992 17 N -0.352 5.352 18 C 0.341 3.659 19 O -0.460 6.460 20 C -0.122 4.122 21 C -0.087 4.087 22 C -0.100 4.100 23 C -0.047 4.047 24 N -0.163 5.163 25 C -0.079 4.079 26 C -0.093 4.093 27 N -0.169 5.169 28 C -0.075 4.075 29 C -0.053 4.053 30 C -0.156 4.156 31 H 0.057 0.943 32 H 0.201 0.799 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.257 0.743 40 H 0.192 0.808 41 H 0.189 0.811 42 H 0.239 0.761 43 H 0.235 0.765 44 H 0.152 0.848 45 H 0.067 0.933 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.278 -31.641 -11.420 33.663 hybrid contribution -0.296 1.475 0.027 1.504 sum -1.575 -30.166 -11.393 32.285 Atomic orbital electron populations 1.69832 1.06644 1.25792 1.60074 1.25548 0.96324 1.01075 1.04344 0.85171 0.77752 0.79766 0.77300 1.21627 1.22549 1.19298 1.19663 0.91442 0.85434 1.40157 0.90607 1.42774 1.05221 1.01059 1.88414 1.21164 0.94055 0.85015 0.94593 0.93775 1.22951 0.98713 0.98329 0.97931 1.22470 0.97700 0.97333 0.97003 1.22123 0.95110 0.97613 0.95341 0.86675 1.21384 0.97365 0.88192 0.92253 1.45724 1.13487 1.34760 1.41187 1.18451 0.82892 0.82103 0.82473 1.90798 1.39376 1.68230 1.47550 1.19913 0.95520 0.97606 0.99134 1.21300 0.98204 0.96212 0.92986 1.21002 0.96411 0.94206 0.98414 1.19964 0.95255 0.95339 0.94137 1.68833 1.26736 1.05029 1.15720 1.24993 0.87778 0.97843 0.97305 1.24928 1.02009 0.92449 0.89904 1.68699 1.24017 1.06336 1.17836 1.19491 0.91525 0.97963 0.98523 1.21192 0.97666 0.91693 0.94719 1.22383 0.99729 0.95192 0.98340 0.94280 0.79865 0.94457 0.90135 0.88967 0.94166 0.93554 0.91437 0.74328 0.80798 0.81105 0.76055 0.76543 0.84759 0.93268 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.75 13.06 21.65 0.28 -60.46 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 3 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.23 -13.06 9.96 84.03 0.84 -12.22 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.73 -36.82 5.08 -319.52 -1.62 -38.44 16 10 C 0.16 5.96 3.55 45.72 0.16 6.12 16 11 H 0.04 1.67 8.09 -2.39 -0.02 1.65 16 12 C -0.14 -4.36 6.54 31.67 0.21 -4.15 16 13 C -0.11 -2.69 6.19 31.88 0.20 -2.49 16 14 C -0.08 -1.81 2.89 -9.72 -0.03 -1.84 16 15 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 16 C 0.13 3.16 4.96 86.38 0.43 3.58 16 17 N -0.70 -13.38 5.40 -465.96 -2.51 -15.90 16 18 C 0.55 13.73 7.77 86.79 0.67 14.40 16 19 O -0.58 -19.95 16.30 -3.87 -0.06 -20.02 16 20 C -0.12 -2.34 5.87 -20.11 -0.12 -2.46 16 21 C -0.07 -0.84 9.44 22.27 0.21 -0.63 16 22 C -0.08 -1.07 9.95 22.29 0.22 -0.84 16 23 C 0.08 1.35 6.59 40.33 0.27 1.62 16 24 N -0.45 -6.77 10.46 -187.88 -1.96 -8.73 16 25 C 0.10 0.80 11.21 85.14 0.95 1.75 16 26 C 0.08 0.82 11.22 85.14 0.95 1.78 16 27 N -0.45 -8.75 10.46 -188.11 -1.97 -10.72 16 28 C 0.05 0.99 6.58 40.26 0.27 1.26 16 29 C -0.03 -0.74 9.56 22.85 0.22 -0.52 16 30 C -0.12 -3.48 6.14 31.32 0.19 -3.29 16 31 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 32 H 0.37 20.28 7.52 -92.70 -0.70 19.58 16 33 H 0.04 1.43 8.04 -2.38 -0.02 1.41 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.04 1.25 7.97 -2.39 -0.02 1.23 16 37 H 0.05 1.41 8.02 -2.39 -0.02 1.39 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.42 4.69 6.42 -92.71 -0.60 4.09 16 40 H 0.17 0.83 6.35 -2.91 -0.02 0.81 16 41 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.22 -0.38 8.06 -2.91 -0.02 -0.41 16 43 H 0.22 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.13 3.51 7.61 -2.91 -0.02 3.49 16 45 H 0.05 1.71 7.31 -2.39 -0.02 1.69 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -82.20 383.87 0.02 -82.18 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.27 Total: 25.50 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 6.11 Total: -2.18 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -7.79 Total: -134.25 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -82.20 0.02 -82.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086871145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.099 kcal (2) G-P(sol) polarization free energy of solvation -82.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds