Wall clock time and date at job start Tue Mar 31 2020 23:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99551 * 2 1 4 4 H 1.48505 * 109.47125 * 269.99745 * 3 2 1 5 5 H 1.48492 * 109.47188 * 29.99853 * 3 2 1 6 6 H 1.48503 * 109.47199 * 149.99885 * 3 2 1 7 7 C 1.38808 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99901 * 155.09169 * 7 2 1 9 9 N 1.36937 * 120.00010 * 335.10045 * 7 2 1 10 10 C 1.44327 * 116.35279 * 332.54664 * 9 7 2 11 11 C 1.51604 * 113.11000 * 187.25828 * 10 9 7 12 12 C 1.52870 * 111.55721 * 320.91393 * 11 10 9 13 13 H 1.09002 * 112.86493 * 294.19255 * 12 11 10 14 14 C 1.56209 * 106.67298 * 168.35330 * 12 11 10 15 15 N 1.47758 * 104.00441 * 286.46425 * 14 12 11 16 16 C 1.34774 * 125.81924 * 154.06376 * 15 14 12 17 17 O 1.21647 * 119.99981 * 359.71197 * 16 15 14 18 18 C 1.47271 * 120.00109 * 179.71427 * 16 15 14 19 19 C 1.38440 * 120.03403 * 179.97438 * 18 16 15 20 20 C 1.40650 * 118.27680 * 179.97438 * 19 18 16 21 21 C 1.38256 * 133.40709 * 180.02562 * 20 19 18 22 22 C 1.39679 * 106.99841 * 180.23013 * 21 20 19 23 23 C 1.35642 * 108.08168 * 359.62277 * 22 21 20 24 24 N 1.35910 * 109.06173 * 0.37930 * 23 22 21 25 25 C 1.36897 * 132.42710 * 179.78365 * 24 23 22 26 26 N 1.29796 * 121.48284 * 179.97438 * 25 24 23 27 27 C 1.47622 * 108.35973 * 333.79723 * 15 14 12 28 28 C 1.53567 * 106.34584 * 0.86330 * 27 15 14 29 29 H 1.08995 * 108.71142 * 270.19190 * 28 27 15 30 30 C 1.43997 * 116.35525 * 152.52927 * 9 7 2 31 31 H 0.96996 * 120.00818 * 0.02562 * 1 2 3 32 32 H 1.09004 * 108.75205 * 308.19617 * 10 9 7 33 33 H 1.08993 * 108.75460 * 66.32079 * 10 9 7 34 34 H 1.09005 * 109.06148 * 81.45742 * 11 10 9 35 35 H 1.09000 * 109.05973 * 200.45141 * 11 10 9 36 36 H 1.08998 * 110.62271 * 167.80518 * 14 12 11 37 37 H 1.09007 * 110.48170 * 45.04933 * 14 12 11 38 38 H 1.08006 * 120.85843 * 0.02562 * 19 18 16 39 39 H 1.07996 * 126.49855 * 359.95580 * 21 20 19 40 40 H 1.07997 * 125.95424 * 179.77256 * 22 21 20 41 41 H 1.08001 * 125.46868 * 180.14412 * 23 22 21 42 42 H 1.07998 * 119.26234 * 0.02562 * 25 24 23 43 43 H 1.08993 * 110.07721 * 120.08615 * 27 15 14 44 44 H 1.08998 * 110.07685 * 241.64702 * 27 15 14 45 45 H 1.08999 * 108.15760 * 60.77966 * 30 9 7 46 46 H 1.09010 * 107.99293 * 304.09767 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0150 -1.2456 -0.3934 9 7 1.4211 -2.3327 0.5003 10 6 0.4152 -2.1354 1.5163 11 6 -0.0620 -3.4317 2.1409 12 6 -0.1922 -4.5427 1.0990 13 1 -0.9719 -4.3444 0.3635 14 6 -0.3905 -5.8762 1.8881 15 7 0.9468 -6.1630 2.4473 16 6 1.1994 -6.8842 3.5574 17 8 0.2797 -7.3601 4.1959 18 6 2.5887 -7.0963 3.9976 19 6 2.8489 -7.8366 5.1381 20 6 4.1893 -8.0164 5.5243 21 6 4.7942 -8.6791 6.5762 22 6 6.1720 -8.4998 6.4335 23 6 6.3867 -7.7560 5.3197 24 7 5.1899 -7.4489 4.7536 25 6 4.8530 -6.7297 3.6385 26 7 3.6147 -6.5667 3.2855 27 6 1.9593 -5.5302 1.5792 28 6 1.1850 -4.8155 0.4621 29 1 1.0467 -5.5096 -0.3668 30 6 1.8745 -3.5851 -0.0469 31 1 -0.4851 0.8399 -0.0004 32 1 0.8283 -1.5000 2.2997 33 1 -0.4389 -1.6264 1.0696 34 1 0.6505 -3.7420 2.9053 35 1 -1.0335 -3.2660 2.6065 36 1 -0.7034 -6.6763 1.2173 37 1 -1.1181 -5.7412 2.6885 38 1 2.0434 -8.2656 5.7158 39 1 4.2956 -9.2272 7.3619 40 1 6.9337 -8.8880 7.0934 41 1 7.3533 -7.4529 4.9452 42 1 5.6353 -6.2887 3.0386 43 1 2.5436 -4.8088 2.1502 44 1 2.6145 -6.2900 1.1533 45 1 2.9398 -3.6815 0.1626 46 1 1.7455 -3.5463 -1.1286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088009593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:27 Heat of formation + Delta-G solvation = 96.942836 kcal Electronic energy + Delta-G solvation = -29744.049816 eV Core-core repulsion = 25829.059890 eV Total energy + Delta-G solvation = -3914.989926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.65719 -40.34756 -38.58633 -37.45197 -35.59876 -33.40381 -32.57932 -31.52319 -31.18996 -30.31033 -28.82832 -27.70251 -25.60136 -24.72295 -23.99703 -22.96076 -21.88093 -21.57482 -21.28482 -19.84265 -18.65047 -17.80175 -17.30958 -17.04048 -16.17176 -16.13054 -15.90458 -15.63356 -15.16649 -14.83933 -14.60270 -14.31080 -13.93925 -13.81362 -13.32282 -13.04950 -12.96551 -12.86721 -12.74977 -12.73291 -12.40632 -12.31950 -12.21873 -11.70159 -11.19269 -11.10749 -10.88238 -10.73998 -10.70309 -10.43863 -10.24700 -10.17138 -9.87752 -9.71276 -9.58962 -9.51231 -9.27950 -8.53271 -8.42010 -7.78886 -6.58368 -5.60590 -3.25235 0.16022 0.90320 2.24593 2.53238 2.60390 2.97583 3.37983 3.45778 3.49254 3.53748 3.71558 4.23927 4.30517 4.50526 4.51791 4.80098 4.85663 4.90558 4.98202 5.15020 5.19201 5.28775 5.35523 5.40385 5.46879 5.62785 5.71187 5.73847 5.83458 5.88457 5.97167 6.05807 6.08812 6.22583 6.26216 6.37953 6.38563 6.45523 6.60396 6.64580 6.73293 6.77210 6.85885 6.91437 7.33889 7.36959 7.60867 7.83226 7.95553 8.15796 8.55337 9.31119 10.01819 10.31311 11.25163 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.003043 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.235151 B = 9200.068560 C =10477.912854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.006 3.994 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.268 4.268 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.157 3.843 11 C -0.120 4.120 12 C -0.082 4.082 13 H 0.101 0.899 14 C 0.106 3.894 15 N -0.595 5.595 16 C 0.590 3.410 17 O -0.547 6.547 18 C 0.017 3.983 19 C -0.042 4.042 20 C 0.026 3.974 21 C -0.173 4.173 22 C -0.148 4.148 23 C -0.027 4.027 24 N -0.387 5.387 25 C 0.306 3.694 26 N -0.457 5.457 27 C 0.129 3.871 28 C -0.105 4.105 29 H 0.070 0.930 30 C 0.178 3.822 31 H 0.252 0.748 32 H 0.015 0.985 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.162 0.838 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.177 0.823 42 H 0.209 0.791 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.015 0.985 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 -17.556 8.948 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.194 4.194 3 Si 0.726 3.274 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.397 4.397 8 H 0.082 0.918 9 N -0.309 5.309 10 C 0.032 3.968 11 C -0.158 4.158 12 C -0.101 4.101 13 H 0.120 0.880 14 C -0.016 4.016 15 N -0.326 5.326 16 C 0.378 3.622 17 O -0.426 6.426 18 C -0.100 4.100 19 C -0.064 4.064 20 C -0.078 4.078 21 C -0.199 4.199 22 C -0.170 4.170 23 C -0.159 4.159 24 N -0.060 5.060 25 C 0.024 3.976 26 N -0.169 5.169 27 C 0.007 3.993 28 C -0.125 4.125 29 H 0.089 0.911 30 C 0.052 3.948 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.180 0.820 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.194 0.806 42 H 0.225 0.775 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.032 0.968 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.803 -17.179 8.423 21.061 hybrid contribution 0.807 0.533 0.672 1.178 sum 9.610 -16.646 9.095 21.264 Atomic orbital electron populations 1.69988 1.05505 1.25349 1.52366 1.24951 0.94930 0.98482 1.01032 0.86397 0.79473 0.83841 0.77693 1.21419 1.21582 1.20567 1.19095 0.96177 0.86704 1.37769 0.91785 1.42674 1.45418 1.01013 1.41841 1.20226 0.94713 0.92025 0.89849 1.21576 1.00365 0.96643 0.97204 1.22285 0.97306 0.93152 0.97386 0.88039 1.22765 0.84239 0.97140 0.97481 1.48474 1.09427 1.50135 1.24588 1.16996 0.86559 0.78725 0.79934 1.90806 1.44886 1.51492 1.55416 1.20760 0.92789 1.01255 0.95230 1.21648 0.94444 0.95222 0.95127 1.18888 0.88121 1.04249 0.96590 1.21151 0.93770 1.05536 0.99458 1.21055 0.96209 1.01754 0.98007 1.22010 0.88290 1.07239 0.98315 1.43232 1.08337 1.35107 1.19307 1.24957 0.94913 0.91906 0.85811 1.68518 0.97849 1.20680 1.29854 1.22213 0.90033 0.96300 0.90762 1.21617 0.95715 0.98177 0.96954 0.91113 1.19318 0.95373 0.84479 0.95648 0.93721 0.96687 0.90208 0.93461 0.92611 0.91525 0.90307 0.82026 0.83137 0.83070 0.80607 0.77454 0.90143 0.91150 0.96761 0.95955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 10.92 55.49 0.61 -24.85 16 2 C 0.01 0.16 4.94 -17.43 -0.09 0.07 16 3 Si 0.90 21.57 29.62 -169.99 -5.04 16.54 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.27 -7.29 9.25 -15.06 -0.14 -7.43 16 8 H 0.06 1.72 7.94 -52.48 -0.42 1.30 16 9 N -0.59 -14.42 3.23 -179.58 -0.58 -15.00 16 10 C 0.16 3.75 5.14 -5.91 -0.03 3.72 16 11 C -0.12 -2.31 4.98 -27.50 -0.14 -2.45 16 12 C -0.08 -1.38 3.78 -88.36 -0.33 -1.71 16 13 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 14 C 0.11 1.61 6.25 -1.63 -0.01 1.60 16 15 N -0.60 -9.48 2.80 -170.72 -0.48 -9.96 16 16 C 0.59 9.75 7.82 -12.59 -0.10 9.65 16 17 O -0.55 -10.15 16.59 5.24 0.09 -10.07 16 18 C 0.02 0.25 6.74 -82.43 -0.56 -0.31 16 19 C -0.04 -0.53 9.72 -38.60 -0.38 -0.90 16 20 C 0.03 0.29 6.78 -83.95 -0.57 -0.28 16 21 C -0.17 -1.58 10.98 -39.04 -0.43 -2.00 16 22 C -0.15 -1.10 10.80 -39.97 -0.43 -1.53 16 23 C -0.03 -0.20 11.61 -16.67 -0.19 -0.39 16 24 N -0.39 -3.80 2.95 -62.17 -0.18 -3.98 16 25 C 0.31 2.99 12.16 -89.24 -1.09 1.90 16 26 N -0.46 -5.87 6.91 -10.43 -0.07 -5.94 16 27 C 0.13 1.99 4.05 -3.13 -0.01 1.98 16 28 C -0.11 -1.74 2.68 -91.23 -0.24 -1.99 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 C 0.18 3.63 5.67 -6.89 -0.04 3.59 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.08 2.16 5.74 -51.93 -0.30 1.86 16 34 H 0.05 0.93 6.77 -51.93 -0.35 0.58 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 38 H 0.16 1.88 7.66 -52.48 -0.40 1.48 16 39 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.08 1.38 7.14 -51.93 -0.37 1.01 16 44 H 0.07 0.99 7.52 -51.93 -0.39 0.60 16 45 H 0.01 0.29 7.78 -51.93 -0.40 -0.11 16 46 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -33.08 365.56 -11.32 -44.41 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.41 Total: -0.18 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -4.77 Total: 3.52 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.71 Total: -59.73 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.04 Total: 16.54 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.08 -11.32 -44.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088009593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.350 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds