Wall clock time and date at job start Tue Mar 31 2020 23:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48497 * 109.47307 * 180.27569 * 3 2 1 5 5 H 1.48500 * 109.47247 * 300.27786 * 3 2 1 6 6 H 1.48504 * 109.46787 * 60.27412 * 3 2 1 7 7 C 1.38814 * 120.00637 * 180.27788 * 2 1 3 8 8 H 1.07996 * 120.00779 * 175.67214 * 7 2 1 9 9 N 1.36944 * 119.99181 * 355.67071 * 7 2 1 10 10 C 1.47237 * 121.38835 * 215.21985 * 9 7 2 11 11 C 1.52738 * 107.70713 * 238.34106 * 10 9 7 12 12 C 1.53087 * 110.93609 * 302.04567 * 11 10 9 13 13 H 1.08996 * 112.14591 * 287.60125 * 12 11 10 14 14 C 1.55408 * 106.23516 * 164.37334 * 12 11 10 15 15 N 1.48914 * 106.07042 * 268.59824 * 14 12 11 16 16 C 1.34774 * 125.45482 * 178.83663 * 15 14 12 17 17 O 1.21649 * 120.00250 * 185.88947 * 16 15 14 18 18 C 1.47159 * 120.00159 * 5.88224 * 16 15 14 19 19 C 1.38594 * 120.72652 * 353.02837 * 18 16 15 20 20 C 1.38915 * 121.36835 * 180.02562 * 19 18 16 21 21 C 1.35830 * 122.59538 * 359.97438 * 20 19 18 22 22 C 1.40838 * 120.55564 * 0.02562 * 21 20 19 23 23 C 1.38427 * 134.89798 * 180.02562 * 22 21 20 24 24 N 1.33887 * 107.84598 * 179.97438 * 23 22 21 25 25 H 0.97004 * 125.02092 * 179.97438 * 24 23 22 26 26 N 1.39984 * 109.96200 * 359.97438 * 24 23 22 27 27 C 1.31478 * 109.01604 * 359.74494 * 26 24 23 28 28 C 1.47852 * 108.89615 * 358.80883 * 15 14 12 29 29 C 1.53859 * 103.99099 * 336.67304 * 28 15 14 30 30 H 1.09001 * 109.14957 * 283.00485 * 29 28 15 31 31 C 1.46703 * 121.39321 * 34.94445 * 9 7 2 32 32 H 0.96996 * 119.99941 * 359.72655 * 1 2 3 33 33 H 1.09000 * 109.81161 * 357.89559 * 10 9 7 34 34 H 1.09002 * 109.80747 * 118.72705 * 10 9 7 35 35 H 1.08996 * 109.18941 * 62.42389 * 11 10 9 36 36 H 1.08999 * 109.18350 * 181.67724 * 11 10 9 37 37 H 1.09001 * 109.96698 * 28.14042 * 14 12 11 38 38 H 1.09001 * 109.97076 * 149.39610 * 14 12 11 39 39 H 1.07998 * 119.31612 * 0.02562 * 19 18 16 40 40 H 1.08001 * 118.70552 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.72527 * 179.97438 * 21 20 19 42 42 H 1.07998 * 126.07822 * 359.95110 * 23 22 21 43 43 H 1.09006 * 110.52702 * 218.04559 * 28 15 14 44 44 H 1.09002 * 110.64709 * 95.35575 * 28 15 14 45 45 H 1.08997 * 109.12024 * 248.29747 * 31 9 7 46 46 H 1.08997 * 109.12093 * 7.39093 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0067 5 1 1.8863 2.3994 -1.2091 6 1 1.8964 2.3935 1.2159 7 6 2.0103 -1.2021 -0.0058 8 1 3.0880 -1.2031 -0.0764 9 7 1.3285 -2.3867 0.0780 10 6 1.8821 -3.5403 0.8066 11 6 1.9877 -4.7039 -0.1771 12 6 0.6213 -5.0328 -0.7841 13 1 -0.0409 -5.5177 -0.0668 14 6 0.9009 -5.9210 -2.0283 15 7 1.0220 -4.9877 -3.1822 16 6 1.2874 -5.3469 -4.4538 17 8 1.4707 -4.4937 -5.3013 18 6 1.3555 -6.7714 -4.8170 19 6 1.2925 -7.7545 -3.8422 20 6 1.3561 -9.1030 -4.1700 21 6 1.4818 -9.5397 -5.4501 22 6 1.5546 -8.6219 -6.5158 23 6 1.6802 -8.7285 -7.8902 24 7 1.6946 -7.4898 -8.3983 25 1 1.7739 -7.2757 -9.3411 26 7 1.5784 -6.5494 -7.3680 27 6 1.4855 -7.1818 -6.2191 28 6 0.8032 -3.6055 -2.7051 29 6 -0.0182 -3.7825 -1.4162 30 1 -1.0527 -4.0036 -1.6790 31 6 0.0135 -2.5576 -0.5494 32 1 -0.4850 0.8400 0.0040 33 1 2.8705 -3.2929 1.1938 34 1 1.2199 -3.8097 1.6294 35 1 2.6793 -4.4362 -0.9759 36 1 2.3679 -5.5815 0.3457 37 1 1.8276 -6.4775 -1.8877 38 1 0.0724 -6.6113 -2.1867 39 1 1.1919 -7.4664 -2.8063 40 1 1.3034 -9.8329 -3.3758 41 1 1.5272 -10.5996 -5.6522 42 1 1.7539 -9.6475 -8.4528 43 1 0.2402 -3.0316 -3.4413 44 1 1.7541 -3.1186 -2.4884 45 1 -0.7431 -2.6579 0.2288 46 1 -0.2111 -1.6784 -1.1532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088061470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:11 Heat of formation + Delta-G solvation = 118.666642 kcal Electronic energy + Delta-G solvation = -29725.133960 eV Core-core repulsion = 25811.086049 eV Total energy + Delta-G solvation = -3914.047911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.42443 -40.08956 -38.06758 -36.91584 -35.17426 -32.65250 -32.23008 -31.45731 -30.46446 -30.30939 -29.00690 -27.46698 -25.69001 -24.92397 -23.48516 -22.12123 -21.94532 -21.28813 -21.17403 -19.08908 -18.47398 -18.19517 -17.53887 -16.80366 -15.85806 -15.73709 -15.63526 -15.07426 -14.98571 -14.62941 -14.20929 -14.08498 -13.76971 -13.52051 -13.35704 -13.19899 -12.78574 -12.65825 -12.27581 -12.15944 -12.05716 -11.87799 -11.71337 -11.40158 -10.97026 -10.86600 -10.70431 -10.64087 -10.51311 -10.41257 -10.30033 -10.15041 -9.89190 -9.49609 -9.39275 -9.32925 -9.03658 -8.46148 -8.24425 -7.79723 -6.52580 -5.76988 -3.29210 0.18515 1.62109 2.08037 2.45824 3.10754 3.24429 3.40186 3.48017 3.49536 3.87746 4.03430 4.28200 4.50814 4.66200 4.71625 4.90258 4.98739 5.05525 5.14996 5.17892 5.28813 5.40890 5.42489 5.46707 5.58107 5.72349 5.78789 5.87677 5.95128 6.10119 6.15597 6.19491 6.30582 6.32935 6.40916 6.49874 6.50250 6.61001 6.65651 6.77236 6.82183 6.88813 6.91945 7.03610 7.36077 7.44277 7.79622 7.82116 7.87205 8.54104 8.55392 9.26478 9.84944 10.47246 11.29584 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.002847 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.192266 B = 9832.718530 C =10774.919432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.010 3.990 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.087 4.087 13 H 0.089 0.911 14 C 0.090 3.910 15 N -0.613 5.613 16 C 0.565 3.435 17 O -0.529 6.529 18 C -0.108 4.108 19 C -0.074 4.074 20 C -0.166 4.166 21 C -0.020 4.020 22 C -0.220 4.220 23 C 0.086 3.914 24 N -0.432 5.432 25 H 0.444 0.556 26 N -0.269 5.269 27 C 0.136 3.864 28 C 0.125 3.875 29 C -0.112 4.112 30 H 0.063 0.937 31 C 0.172 3.828 32 H 0.254 0.746 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.168 0.832 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.189 0.811 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.019 0.981 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -23.698 -10.174 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.106 4.106 13 H 0.107 0.893 14 C -0.032 4.032 15 N -0.348 5.348 16 C 0.355 3.645 17 O -0.406 6.406 18 C -0.114 4.114 19 C -0.096 4.096 20 C -0.186 4.186 21 C -0.041 4.041 22 C -0.230 4.230 23 C -0.072 4.072 24 N -0.132 5.132 25 H 0.288 0.712 26 N -0.094 5.094 27 C -0.022 4.022 28 C 0.004 3.996 29 C -0.133 4.133 30 H 0.081 0.919 31 C 0.046 3.954 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.184 0.816 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.206 0.794 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.037 0.963 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.873 -21.852 -11.320 24.626 hybrid contribution 0.411 -0.045 -0.274 0.496 sum 1.284 -21.897 -11.594 24.810 Atomic orbital electron populations 1.69872 1.05321 1.25371 1.54232 1.25312 0.95538 0.98245 0.99752 0.86236 0.79450 0.83999 0.77253 1.20238 1.21640 1.21550 1.19135 0.90733 0.82898 1.45116 0.91821 1.43953 1.19368 1.09624 1.58358 1.20902 0.97447 0.87800 0.92266 1.22065 0.95514 0.99110 1.00269 1.22194 0.98056 0.95616 0.94757 0.89258 1.23197 1.00306 0.92879 0.86793 1.48997 1.69938 1.09582 1.06248 1.17612 0.77814 0.87886 0.81192 1.90838 1.49555 1.51950 1.48296 1.19898 1.09596 0.93166 0.88741 1.22777 0.92781 0.92544 1.01461 1.20413 1.06101 0.95586 0.96483 1.20288 0.94548 0.98012 0.91207 1.19596 1.16597 0.93983 0.92806 1.22736 1.00150 0.90339 0.93929 1.46588 1.51799 1.04104 1.10686 0.71192 1.77902 1.26963 1.10109 0.94440 1.21552 0.97513 0.91046 0.92107 1.22214 1.01141 0.81265 0.94976 1.22102 0.97607 0.97932 0.95643 0.91907 1.20138 0.87015 0.94088 0.94155 0.93551 0.92711 0.96082 0.92099 0.93187 0.90514 0.91009 0.81575 0.85489 0.85759 0.79416 0.91204 0.90005 0.96307 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.70 10.65 55.49 0.59 -25.11 16 2 C 0.01 0.28 5.33 -17.43 -0.09 0.19 16 3 Si 0.90 21.79 29.56 -169.99 -5.02 16.77 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.71 9.64 -15.06 -0.15 -6.86 16 8 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 9 N -0.59 -14.21 2.83 -174.36 -0.49 -14.70 16 10 C 0.14 2.82 6.52 -3.77 -0.02 2.79 16 11 C -0.13 -2.10 4.78 -26.82 -0.13 -2.23 16 12 C -0.09 -1.31 3.58 -88.77 -0.32 -1.62 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 14 C 0.09 1.19 4.25 -1.43 -0.01 1.18 16 15 N -0.61 -10.61 3.38 -175.26 -0.59 -11.20 16 16 C 0.57 10.74 7.81 -12.64 -0.10 10.64 16 17 O -0.53 -12.21 16.68 5.23 0.09 -12.13 16 18 C -0.11 -1.69 6.05 -102.75 -0.62 -2.31 16 19 C -0.07 -0.86 8.64 -39.20 -0.34 -1.20 16 20 C -0.17 -1.52 9.83 -40.19 -0.39 -1.91 16 21 C -0.02 -0.18 10.02 -39.46 -0.40 -0.57 16 22 C -0.22 -2.41 6.34 -105.21 -0.67 -3.07 16 23 C 0.09 0.65 12.08 -16.59 -0.20 0.45 16 24 N -0.43 -4.09 7.18 30.86 0.22 -3.87 16 25 H 0.44 2.41 8.96 -182.68 -1.64 0.77 16 26 N -0.27 -4.26 12.26 34.35 0.42 -3.84 16 27 C 0.14 2.11 7.28 -80.98 -0.59 1.52 16 28 C 0.12 2.46 5.81 -2.85 -0.02 2.45 16 29 C -0.11 -2.06 2.82 -91.09 -0.26 -2.31 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 C 0.17 3.95 4.63 -5.38 -0.02 3.92 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.05 1.08 7.97 -51.93 -0.41 0.67 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 1.09 7.11 -51.93 -0.37 0.73 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.88 6.41 -51.93 -0.33 0.55 16 38 H 0.07 0.79 6.79 -51.93 -0.35 0.43 16 39 H 0.17 1.67 2.66 -59.46 -0.16 1.51 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.19 0.42 8.06 -52.49 -0.42 0.00 16 43 H 0.07 1.47 8.12 -51.93 -0.42 1.04 16 44 H 0.08 1.83 7.46 -51.93 -0.39 1.44 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 2.73 5.94 -51.93 -0.31 2.43 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -36.30 361.70 -10.97 -47.27 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.31 Total: 0.31 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -4.32 Total: 1.05 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.15 Total: -58.72 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.30 -10.97 -47.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088061470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.934 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds