Wall clock time and date at job start Tue Mar 31 2020 23:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00114 * 2 1 4 4 H 1.48495 * 109.47218 * 275.07318 * 3 2 1 5 5 H 1.48505 * 109.46757 * 35.07561 * 3 2 1 6 6 H 1.48502 * 109.46968 * 155.07469 * 3 2 1 7 7 C 1.38816 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99604 * 330.18591 * 7 2 1 9 9 N 1.36934 * 120.00012 * 150.18234 * 7 2 1 10 10 C 1.44321 * 116.35997 * 329.58291 * 9 7 2 11 11 C 1.51599 * 113.11827 * 187.24007 * 10 9 7 12 12 C 1.52902 * 111.54908 * 320.92487 * 11 10 9 13 13 H 1.08999 * 112.87657 * 294.20423 * 12 11 10 14 14 C 1.56211 * 107.45622 * 168.72001 * 12 11 10 15 15 N 1.47753 * 103.99662 * 286.24999 * 14 12 11 16 16 C 1.34779 * 125.82199 * 154.04010 * 15 14 12 17 17 O 1.21670 * 119.99820 * 359.71584 * 16 15 14 18 18 C 1.46930 * 120.00260 * 179.71748 * 16 15 14 19 19 C 1.36364 * 126.82644 * 0.26207 * 18 16 15 20 20 N 1.35577 * 109.74514 * 180.20526 * 19 18 16 21 21 H 0.96995 * 124.71583 * 179.82035 * 20 19 18 22 22 C 1.37693 * 110.56432 * 359.55494 * 20 19 18 23 23 N 1.32669 * 132.95057 * 180.28466 * 22 20 19 24 24 C 1.31606 * 121.69245 * 180.02562 * 23 22 20 25 25 C 1.38583 * 121.53907 * 359.96577 * 24 23 22 26 26 C 1.38331 * 119.32977 * 0.02562 * 25 24 23 27 27 C 1.39345 * 118.05315 * 0.02562 * 26 25 24 28 28 C 1.47615 * 108.36214 * 333.77421 * 15 14 12 29 29 C 1.53576 * 106.34136 * 0.87707 * 28 15 14 30 30 H 1.08994 * 108.70866 * 269.68939 * 29 28 15 31 31 C 1.43385 * 116.51366 * 150.44707 * 9 7 2 32 32 H 0.97000 * 119.99884 * 359.97438 * 1 2 3 33 33 H 1.09005 * 108.75028 * 66.29994 * 10 9 7 34 34 H 1.08999 * 108.65751 * 308.11250 * 10 9 7 35 35 H 1.08999 * 109.06550 * 200.39423 * 11 10 9 36 36 H 1.09000 * 109.01053 * 81.41926 * 11 10 9 37 37 H 1.09002 * 110.63401 * 167.59228 * 14 12 11 38 38 H 1.09001 * 110.48944 * 44.83208 * 14 12 11 39 39 H 1.07998 * 125.12259 * 0.04829 * 19 18 16 40 40 H 1.08005 * 119.22728 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.33347 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.97497 * 179.97438 * 26 25 24 43 43 H 1.09004 * 110.08292 * 120.09426 * 28 15 14 44 44 H 1.09002 * 110.08445 * 241.60512 * 28 15 14 45 45 H 1.08999 * 109.15918 * 60.56104 * 31 9 7 46 46 H 1.08998 * 106.73322 * 304.24444 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3905 2.1083 -1.3945 5 1 1.5054 2.6193 0.8046 6 1 3.5973 1.4115 0.5901 7 6 2.0103 -1.2022 -0.0005 8 1 1.5774 -2.0758 0.4641 9 7 3.2437 -1.2804 -0.5902 10 6 3.4750 -0.4012 -1.7111 11 6 4.7907 -0.6679 -2.4152 12 6 5.9039 -0.9966 -1.4198 13 1 6.1577 -0.1553 -0.7749 14 6 7.1214 -1.5328 -2.2386 15 7 6.7071 -2.8910 -2.6470 16 6 7.1531 -3.5599 -3.7287 17 8 7.9666 -3.0427 -4.4711 18 6 6.6570 -4.9137 -4.0115 19 6 5.7474 -5.6200 -3.2813 20 7 5.5443 -6.8329 -3.8521 21 1 4.9412 -7.5108 -3.5092 22 6 6.3088 -6.9662 -4.9895 23 7 6.4495 -7.9445 -5.8746 24 6 7.2620 -7.8340 -6.9039 25 6 8.0121 -6.6881 -7.1156 26 6 7.9062 -5.6348 -6.2252 27 6 7.0401 -5.7763 -5.1428 28 6 5.7263 -3.3931 -1.6647 29 6 5.5327 -2.2704 -0.6348 30 1 6.2537 -2.4071 0.1711 31 6 4.1567 -2.2392 -0.0398 32 1 -0.4850 0.8401 0.0004 33 1 3.4706 0.6291 -1.3550 34 1 2.6626 -0.5274 -2.4268 35 1 5.0741 0.2157 -2.9871 36 1 4.6641 -1.5082 -3.0979 37 1 8.0141 -1.5774 -1.6147 38 1 7.2973 -0.9079 -3.1142 39 1 5.2638 -5.2674 -2.3823 40 1 7.3461 -8.6556 -7.6000 41 1 8.6733 -6.6185 -7.9668 42 1 8.4787 -4.7297 -6.3643 43 1 4.7805 -3.6141 -2.1595 44 1 6.1107 -4.2882 -1.1758 45 1 3.7253 -3.2362 -0.1290 46 1 4.2507 -2.0096 1.0216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088206014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:47 Heat of formation + Delta-G solvation = 87.824566 kcal Electronic energy + Delta-G solvation = -29786.969975 eV Core-core repulsion = 25871.584652 eV Total energy + Delta-G solvation = -3915.385323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.96799 -40.39739 -38.41624 -37.97443 -35.89512 -33.20013 -32.72552 -31.83951 -31.12978 -30.41037 -29.70340 -27.91195 -26.09087 -24.07484 -23.97848 -22.91429 -22.72386 -22.05497 -21.33118 -19.47375 -18.38116 -18.36350 -17.19954 -16.98666 -16.24934 -16.21833 -16.07291 -15.49649 -15.34649 -15.21396 -14.76970 -14.27300 -14.15629 -14.03483 -13.66500 -13.32863 -13.22639 -13.01229 -12.84271 -12.62837 -12.55482 -12.52318 -12.16370 -12.01711 -11.63663 -11.58911 -10.97173 -10.75970 -10.60647 -10.47637 -10.27599 -10.05413 -9.99716 -9.92241 -9.59090 -9.42780 -8.82735 -8.66906 -8.43205 -8.35932 -6.86142 -6.08704 -3.40062 0.64990 1.06345 1.79049 2.39502 2.91792 3.29737 3.32389 3.46485 3.50974 3.71239 4.18780 4.30340 4.37452 4.47828 4.51560 4.63824 4.72449 4.83597 4.92485 4.94529 4.97849 5.16579 5.19364 5.23398 5.31926 5.34261 5.44338 5.59303 5.60303 5.73924 5.74415 5.91275 5.98229 6.00730 6.04305 6.09263 6.15130 6.16537 6.32483 6.37071 6.51616 6.59036 6.60450 6.78648 6.85549 6.88204 7.50450 7.71033 8.02032 8.21149 8.31008 9.04936 9.72502 9.96268 11.06852 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.002889 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.386092 B = 9689.742584 C =10333.326497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.040 3.960 3 Si 0.878 3.122 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.286 4.286 8 H 0.080 0.920 9 N -0.598 5.598 10 C 0.156 3.844 11 C -0.121 4.121 12 C -0.088 4.088 13 H 0.101 0.899 14 C 0.111 3.889 15 N -0.613 5.613 16 C 0.606 3.394 17 O -0.547 6.547 18 C -0.216 4.216 19 C 0.112 3.888 20 N -0.565 5.565 21 H 0.425 0.575 22 C 0.276 3.724 23 N -0.496 5.496 24 C 0.134 3.866 25 C -0.198 4.198 26 C -0.019 4.019 27 C -0.108 4.108 28 C 0.098 3.902 29 C -0.101 4.101 30 H 0.080 0.920 31 C 0.175 3.825 32 H 0.264 0.736 33 H 0.012 0.988 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.199 0.801 40 H 0.162 0.838 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.022 0.978 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.741 -12.781 -8.198 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.162 4.162 3 Si 0.709 3.291 4 H -0.215 1.215 5 H -0.233 1.233 6 H -0.200 1.200 7 C -0.414 4.414 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.031 3.969 11 C -0.159 4.159 12 C -0.107 4.107 13 H 0.119 0.881 14 C -0.011 4.011 15 N -0.346 5.346 16 C 0.397 3.603 17 O -0.426 6.426 18 C -0.227 4.227 19 C -0.020 4.020 20 N -0.170 5.170 21 H 0.264 0.736 22 C 0.044 3.956 23 N -0.209 5.209 24 C -0.031 4.031 25 C -0.219 4.219 26 C -0.046 4.046 27 C -0.114 4.114 28 C -0.025 4.025 29 C -0.121 4.121 30 H 0.098 0.902 31 C 0.049 3.951 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.216 0.784 40 H 0.179 0.821 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.040 0.960 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 15.518 -13.323 -8.463 22.135 hybrid contribution 0.430 1.412 0.196 1.489 sum 15.948 -11.912 -8.267 21.554 Atomic orbital electron populations 1.69980 1.06171 1.26940 1.49889 1.25258 0.94909 0.97730 0.98283 0.86956 0.80389 0.84742 0.76981 1.21455 1.23269 1.20022 1.18761 0.91515 0.95737 1.35406 0.90212 1.42699 1.13873 1.43471 1.32355 1.20195 0.94340 0.93044 0.89343 1.21507 0.95168 1.01584 0.97675 1.22321 0.94173 0.97496 0.96719 0.88133 1.22657 0.96849 0.82493 0.99075 1.48468 1.43646 1.17477 1.25056 1.16745 0.80652 0.83623 0.79320 1.90756 1.34617 1.69261 1.48006 1.19893 1.06630 0.96298 0.99865 1.23117 0.96693 0.83823 0.98393 1.41419 1.38349 1.16027 1.21187 0.73606 1.18381 0.94873 0.92064 0.90243 1.66482 1.21161 1.29717 1.03564 1.22458 0.90755 0.97154 0.92757 1.21963 1.03379 0.94888 1.01712 1.21143 0.94060 0.98763 0.90594 1.19409 1.00578 0.94349 0.97108 1.22513 0.92363 0.97534 0.90092 1.21571 0.99644 0.93983 0.96871 0.90172 1.19278 0.86720 0.93364 0.95707 0.92651 0.97095 0.93937 0.91869 0.91854 0.91369 0.90141 0.78440 0.82094 0.84296 0.83820 0.90304 0.90986 0.96013 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.97 55.49 0.78 -25.64 16 2 C 0.04 1.11 5.16 -17.43 -0.09 1.02 16 3 Si 0.88 21.83 24.87 -169.99 -4.23 17.60 16 4 H -0.29 -6.98 6.84 56.52 0.39 -6.60 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.29 -7.63 9.61 -15.06 -0.14 -7.78 16 8 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 9 N -0.60 -13.25 2.92 -180.06 -0.53 -13.77 16 10 C 0.16 3.27 4.90 -5.91 -0.03 3.24 16 11 C -0.12 -1.98 5.03 -27.49 -0.14 -2.12 16 12 C -0.09 -1.23 3.72 -88.34 -0.33 -1.56 16 13 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 14 C 0.11 1.41 6.28 -1.63 -0.01 1.40 16 15 N -0.61 -7.99 2.85 -170.84 -0.49 -8.48 16 16 C 0.61 8.94 7.84 -12.74 -0.10 8.84 16 17 O -0.55 -9.61 16.51 5.22 0.09 -9.52 16 18 C -0.22 -2.82 6.25 -103.36 -0.65 -3.46 16 19 C 0.11 1.12 10.41 -16.57 -0.17 0.95 16 20 N -0.57 -5.42 5.97 -11.97 -0.07 -5.49 16 21 H 0.43 2.81 8.96 -40.82 -0.37 2.44 16 22 C 0.28 3.38 8.41 -155.53 -1.31 2.07 16 23 N -0.50 -5.87 10.39 -12.29 -0.13 -6.00 16 24 C 0.13 1.26 11.14 -17.52 -0.20 1.06 16 25 C -0.20 -1.82 10.10 -39.42 -0.40 -2.22 16 26 C -0.02 -0.23 9.97 -39.14 -0.39 -0.62 16 27 C -0.11 -1.43 6.28 -104.93 -0.66 -2.09 16 28 C 0.10 1.11 3.67 -3.13 -0.01 1.10 16 29 C -0.10 -1.34 2.68 -91.23 -0.24 -1.59 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 C 0.18 3.05 5.65 -7.20 -0.04 3.01 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.01 0.27 3.00 -51.93 -0.16 0.11 16 34 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.03 6.86 -51.93 -0.36 0.68 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 39 H 0.20 1.51 4.31 -52.49 -0.23 1.29 16 40 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.14 1.72 7.55 -52.49 -0.40 1.33 16 43 H 0.08 0.93 6.61 -51.93 -0.34 0.59 16 44 H 0.07 0.63 7.04 -51.93 -0.37 0.26 16 45 H 0.02 0.37 7.78 -51.93 -0.40 -0.04 16 46 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -34.49 356.99 -10.08 -44.57 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.98 Total: 0.07 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -4.91 Total: 1.27 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.44 Total: -59.38 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.23 Total: 17.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.49 -10.08 -44.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088206014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.398 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds