Wall clock time and date at job start Tue Mar 31 2020 23:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00205 * 2 1 4 4 H 1.48504 * 109.46818 * 239.99685 * 3 2 1 5 5 H 1.48502 * 109.47076 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47217 * 119.99765 * 3 2 1 7 7 C 1.38816 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99902 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00138 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99981 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.32674 * 34.65014 * 10 9 7 12 12 C 1.54074 * 108.96902 * 153.75164 * 10 9 7 13 13 C 1.53970 * 108.11293 * 175.20685 * 12 10 9 14 14 H 1.08994 * 112.99645 * 168.82398 * 13 12 10 15 15 C 1.55431 * 107.19956 * 294.21801 * 13 12 10 16 16 C 1.55407 * 100.25225 * 73.50568 * 15 13 12 17 17 H 1.08998 * 112.48217 * 162.86175 * 16 15 13 18 18 C 1.52983 * 109.32728 * 275.00469 * 10 9 7 19 19 N 1.47789 * 104.13509 * 40.82653 * 16 15 13 20 20 C 1.34779 * 125.85907 * 153.48726 * 19 16 15 21 21 O 1.21793 * 119.99933 * 4.29563 * 20 19 16 22 22 C 1.41697 * 120.00319 * 184.30141 * 20 19 16 23 23 C 1.39185 * 125.87116 * 354.13552 * 22 20 19 24 24 C 1.38088 * 107.67488 * 180.02562 * 23 22 20 25 25 C 1.39508 * 107.57148 * 359.97438 * 24 23 22 26 26 C 1.40621 * 132.41408 * 179.97438 * 25 24 23 27 27 C 1.36297 * 119.15741 * 179.97438 * 26 25 24 28 28 C 1.39971 * 120.03819 * 0.02562 * 27 26 25 29 29 N 1.30646 * 120.99382 * 0.25223 * 28 27 26 30 30 N 1.37153 * 108.19999 * 359.97438 * 25 24 23 31 31 C 1.47079 * 108.28834 * 333.22027 * 19 16 15 32 32 H 0.97004 * 119.99690 * 0.02562 * 1 2 3 33 33 H 0.96998 * 120.00041 * 0.02562 * 9 7 2 34 34 H 1.09007 * 109.32183 * 55.97769 * 12 10 9 35 35 H 1.09001 * 110.54164 * 295.14940 * 12 10 9 36 36 H 1.09001 * 111.23199 * 191.44221 * 15 13 12 37 37 H 1.08997 * 111.23469 * 315.83450 * 15 13 12 38 38 H 1.09003 * 109.53332 * 64.93206 * 18 10 9 39 39 H 1.08996 * 109.53673 * 304.70637 * 18 10 9 40 40 H 1.07991 * 126.16743 * 0.05129 * 23 22 20 41 41 H 1.07998 * 126.21762 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.42283 * 0.02562 * 26 25 24 43 43 H 1.07998 * 119.97871 * 179.97438 * 27 26 25 44 44 H 1.07998 * 119.50226 * 179.97438 * 28 27 26 45 45 H 1.08991 * 109.98096 * 120.69781 * 31 19 16 46 46 H 1.09001 * 109.97952 * 241.98103 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 1 2.9711 -3.5456 0.5875 12 6 1.1765 -4.7433 0.6481 13 6 1.9136 -6.0900 0.5302 14 1 1.4569 -6.8791 1.1275 15 6 1.9966 -6.4376 -0.9825 16 6 3.0813 -5.4232 -1.4402 17 1 3.5144 -5.6836 -2.4060 18 6 2.4201 -4.0336 -1.4350 19 7 4.0788 -5.4449 -0.3500 20 6 5.3891 -5.1538 -0.4727 21 8 5.8287 -4.7631 -1.5392 22 6 6.2551 -5.3023 0.6389 23 6 5.8687 -5.6267 1.9362 24 6 7.0087 -5.6724 2.7141 25 6 8.0938 -5.3756 1.8891 26 6 9.4747 -5.2793 2.1362 27 6 10.3130 -4.9658 1.1082 28 6 9.7971 -4.7436 -0.1738 29 7 8.5142 -4.8268 -0.4064 30 7 7.6197 -5.1520 0.6216 31 6 3.3953 -5.8324 0.8934 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3881 0.0016 34 1 0.2262 -4.7993 0.1171 35 1 0.9970 -4.5159 1.6989 36 1 2.3243 -7.4661 -1.1337 37 1 1.0465 -6.2512 -1.4831 38 1 3.1147 -3.2980 -1.8406 39 1 1.5166 -4.0578 -2.0442 40 1 4.8593 -5.8101 2.2735 41 1 7.0524 -5.8978 3.7694 42 1 9.8663 -5.4524 3.1277 43 1 11.3759 -4.8880 1.2832 44 1 10.4691 -4.4954 -0.9819 45 1 3.8430 -6.7404 1.2971 46 1 3.4649 -5.0261 1.6235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095010830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:27 Heat of formation + Delta-G solvation = 114.124665 kcal Electronic energy + Delta-G solvation = -30138.643828 eV Core-core repulsion = 26224.398962 eV Total energy + Delta-G solvation = -3914.244866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.15885 -40.67468 -38.19715 -37.19012 -34.74091 -33.44612 -32.75150 -31.24426 -31.12525 -30.10652 -28.77367 -27.79355 -25.87558 -24.98370 -23.62715 -23.35054 -21.71899 -21.30394 -20.94745 -19.87723 -18.77016 -17.78748 -17.38175 -17.08307 -16.46661 -16.14670 -15.81960 -15.48995 -15.05210 -14.62794 -14.35664 -14.10258 -13.71759 -13.57996 -13.44153 -12.99496 -12.95065 -12.76149 -12.59473 -12.32273 -12.24020 -12.14788 -12.09593 -11.67392 -11.59874 -10.97908 -10.96481 -10.83705 -10.69673 -10.64989 -10.38265 -10.14601 -10.03816 -9.67904 -9.60016 -9.47905 -9.06415 -8.83462 -8.38375 -7.87906 -6.89632 -5.71395 -2.99240 0.28161 0.84253 1.75152 2.19834 3.04737 3.18509 3.48578 3.52266 3.54732 3.57430 4.09524 4.25975 4.38238 4.56904 4.59838 4.65314 4.67990 4.94737 5.00528 5.02081 5.18638 5.33198 5.38891 5.42605 5.50147 5.52170 5.56966 5.63380 5.71397 5.79199 5.80163 5.84140 5.95700 5.98530 6.02531 6.07165 6.19147 6.30461 6.35767 6.42362 6.54380 6.57840 6.65526 6.76546 7.06581 7.15220 7.48087 7.73906 7.77544 8.42425 8.47994 9.59160 10.16686 10.51566 11.51275 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.003834 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.603251 B = 7300.724811 C = 8813.076850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.013 4.013 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.234 4.234 8 H 0.066 0.934 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.048 0.952 12 C -0.121 4.121 13 C -0.100 4.100 14 H 0.098 0.902 15 C -0.126 4.126 16 C 0.140 3.860 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.598 5.598 20 C 0.596 3.404 21 O -0.531 6.531 22 C -0.010 4.010 23 C -0.126 4.126 24 C -0.169 4.169 25 C -0.003 4.003 26 C -0.017 4.017 27 C -0.199 4.199 28 C 0.120 3.880 29 N -0.240 5.240 30 N -0.219 5.219 31 C 0.094 3.906 32 H 0.255 0.745 33 H 0.383 0.617 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.177 0.823 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.395 -18.593 6.228 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.365 4.365 8 H 0.084 0.916 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.066 0.934 12 C -0.160 4.160 13 C -0.119 4.119 14 H 0.116 0.884 15 C -0.165 4.165 16 C 0.036 3.964 17 H 0.110 0.890 18 C -0.183 4.183 19 N -0.333 5.333 20 C 0.386 3.614 21 O -0.409 6.409 22 C -0.128 4.128 23 C -0.150 4.150 24 C -0.195 4.195 25 C -0.114 4.114 26 C -0.043 4.043 27 C -0.222 4.222 28 C -0.073 4.073 29 N -0.048 5.048 30 N 0.020 4.980 31 C -0.028 4.028 32 H 0.064 0.936 33 H 0.216 0.784 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.194 0.806 41 H 0.173 0.827 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.211 0.789 45 H 0.088 0.912 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.275 -17.997 4.574 24.045 hybrid contribution 0.871 1.060 0.667 1.525 sum 16.146 -16.937 5.240 23.980 Atomic orbital electron populations 1.69649 1.05009 1.25622 1.58063 1.24686 0.95462 0.97501 1.03171 0.86325 0.78580 0.83783 0.77912 1.21313 1.21649 1.21358 1.19186 0.90869 0.84218 1.42257 0.91555 1.42420 1.05667 0.99806 1.88524 1.20462 0.94252 0.85926 0.92481 0.93373 1.22326 0.99040 0.93179 1.01431 1.22660 0.94132 0.98600 0.96494 0.88382 1.23075 0.99251 0.98276 0.95849 1.22386 0.86821 0.96739 0.90414 0.89041 1.22791 1.00046 0.94285 1.01227 1.48194 1.06394 1.67872 1.10799 1.15216 0.80606 0.78693 0.86888 1.90896 1.75228 1.45925 1.28845 1.18961 0.79759 1.17097 0.96964 1.22197 1.00596 1.01720 0.90494 1.21065 0.90035 1.08845 0.99549 1.19468 0.94997 1.10851 0.86134 1.20897 0.89514 0.93235 1.00690 1.21444 1.02002 1.05806 0.92974 1.24149 0.91432 0.93305 0.98408 1.76205 1.02148 1.15367 1.11063 1.45431 1.05605 1.41729 1.05271 1.22642 0.92805 0.99752 0.87628 0.93567 0.78354 0.91623 0.91390 0.91296 0.89480 0.91776 0.91526 0.80643 0.82662 0.82777 0.83350 0.78900 0.91244 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 23.41 29.55 -169.99 -5.02 18.38 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.23 -6.76 9.92 -15.06 -0.15 -6.90 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -18.41 5.10 -52.89 -0.27 -18.68 16 10 C 0.18 3.57 2.39 -67.38 -0.16 3.41 16 11 H 0.05 1.04 5.87 -51.93 -0.31 0.73 16 12 C -0.12 -1.85 5.07 -25.66 -0.13 -1.98 16 13 C -0.10 -1.15 4.27 -87.92 -0.38 -1.53 16 14 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.13 -1.50 6.21 -24.16 -0.15 -1.65 16 16 C 0.14 2.19 3.97 -65.48 -0.26 1.93 16 17 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 18 C -0.14 -2.73 5.30 -26.28 -0.14 -2.87 16 19 N -0.60 -9.50 2.37 -165.01 -0.39 -9.89 16 20 C 0.60 11.12 7.65 -14.94 -0.11 11.00 16 21 O -0.53 -11.92 16.78 5.11 0.09 -11.83 16 22 C -0.01 -0.16 6.82 -83.75 -0.57 -0.73 16 23 C -0.13 -1.59 9.18 -39.29 -0.36 -1.95 16 24 C -0.17 -1.86 10.92 -39.16 -0.43 -2.29 16 25 C 0.00 -0.04 6.80 -84.11 -0.57 -0.61 16 26 C -0.02 -0.14 10.12 -39.38 -0.40 -0.54 16 27 C -0.20 -1.50 10.04 -39.63 -0.40 -1.90 16 28 C 0.12 1.19 11.29 -17.41 -0.20 1.00 16 29 N -0.24 -3.71 11.33 30.61 0.35 -3.37 16 30 N -0.22 -3.47 4.01 -8.28 -0.03 -3.51 16 31 C 0.09 1.16 3.66 -2.82 -0.01 1.15 16 32 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 34 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.00 7.80 -51.93 -0.40 0.59 16 38 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.07 1.26 8.01 -51.93 -0.42 0.84 16 40 H 0.18 1.79 4.21 -52.49 -0.22 1.57 16 41 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 44 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.07 0.68 6.71 -51.93 -0.35 0.33 16 46 H 0.08 1.05 5.61 -51.93 -0.29 0.76 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -38.30 365.64 -9.63 -47.93 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.07 Total: 8.35 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -4.51 Total: -4.93 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: 0.38 Total: -63.42 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.30 -9.63 -47.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095010830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.053 kcal (2) G-P(sol) polarization free energy of solvation -38.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds