Wall clock time and date at job start Tue Mar 31 2020 23:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99809 * 2 1 4 4 H 1.48499 * 109.47142 * 269.99820 * 3 2 1 5 5 H 1.48497 * 109.47235 * 30.00178 * 3 2 1 6 6 H 1.48505 * 109.46993 * 149.99676 * 3 2 1 7 7 C 1.38805 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00592 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.50672 * 130.80754 * 359.95571 * 9 7 2 11 11 H 1.08995 * 116.62888 * 0.08627 * 10 9 7 12 12 C 1.55768 * 100.88966 * 233.95722 * 10 9 7 13 13 C 1.54845 * 103.59490 * 327.09005 * 12 10 9 14 14 C 1.50234 * 130.83869 * 179.97438 * 9 7 2 15 15 H 1.09001 * 116.46027 * 359.97438 * 14 9 7 16 16 C 1.55851 * 101.05132 * 233.95101 * 14 9 7 17 17 H 1.08999 * 110.62428 * 85.55246 * 16 14 9 18 18 N 1.46494 * 110.76580 * 208.50806 * 16 14 9 19 19 C 1.34770 * 120.00286 * 270.05518 * 18 16 14 20 20 O 1.21286 * 119.99747 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00418 * 179.97438 * 19 18 16 22 22 C 1.50705 * 109.47094 * 179.97438 * 21 19 18 23 23 C 1.39684 * 119.08602 * 90.00553 * 22 21 19 24 24 C 1.35659 * 121.71893 * 179.97438 * 23 22 21 25 25 C 1.41121 * 119.53877 * 359.97162 * 24 23 22 26 26 C 1.38247 * 134.81853 * 179.97438 * 25 24 23 27 27 N 1.33984 * 107.90880 * 180.02562 * 26 25 24 28 28 H 0.97007 * 125.02296 * 179.97438 * 27 26 25 29 29 N 1.39959 * 109.95647 * 0.02562 * 27 26 25 30 30 C 1.32061 * 108.96070 * 359.97438 * 29 27 26 31 31 C 1.35630 * 119.09291 * 269.72595 * 22 21 19 32 32 C 1.54853 * 103.44282 * 327.06279 * 16 14 9 33 33 H 0.96999 * 119.99580 * 0.02562 * 1 2 3 34 34 H 1.08994 * 110.50477 * 208.57222 * 12 10 9 35 35 H 1.08999 * 110.73991 * 85.71607 * 12 10 9 36 36 H 1.09004 * 110.62831 * 241.56772 * 13 12 10 37 37 H 1.09001 * 110.76735 * 118.61224 * 13 12 10 38 38 H 0.97002 * 120.00148 * 90.04901 * 18 16 14 39 39 H 1.08992 * 109.47299 * 299.99958 * 21 19 18 40 40 H 1.08998 * 109.46766 * 60.00121 * 21 19 18 41 41 H 1.07997 * 119.14433 * 359.96912 * 23 22 21 42 42 H 1.08003 * 120.23142 * 179.97438 * 24 23 22 43 43 H 1.07998 * 126.04497 * 0.02562 * 26 25 24 44 44 H 1.08003 * 120.20283 * 0.02562 * 31 22 21 45 45 H 1.09004 * 110.62586 * 118.49062 * 32 16 14 46 46 H 1.08999 * 110.62613 * 241.34831 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1544 -2.6706 0.0009 11 1 -0.8169 -1.8052 -0.0002 12 6 -0.2743 -3.6100 1.2376 13 6 1.0667 -4.3842 1.2380 14 6 1.8188 -3.8071 0.0005 15 1 2.9000 -3.9456 0.0001 16 6 1.0666 -4.3848 -1.2362 17 1 1.6241 -4.1868 -2.1516 18 7 0.8327 -5.8222 -1.0770 19 6 1.7477 -6.7070 -1.5200 20 8 2.7646 -6.3132 -2.0509 21 6 1.5073 -8.1856 -1.3558 22 6 2.6717 -8.9506 -1.9304 23 6 3.7522 -9.2652 -1.1029 24 6 4.8274 -9.9520 -1.5640 25 6 4.8634 -10.3640 -2.9133 26 6 5.7677 -11.0566 -3.6968 27 7 5.2547 -11.1525 -4.9308 28 1 5.6861 -11.5919 -5.6804 29 7 4.0051 -10.5241 -4.9789 30 6 3.7255 -10.0331 -3.7853 31 6 2.6389 -9.3197 -3.2351 32 6 -0.2745 -3.6105 -1.2358 33 1 -0.4849 0.8401 -0.0004 34 1 -1.1132 -4.2952 1.1167 35 1 -0.3829 -3.0299 2.1540 36 1 0.8929 -5.4535 1.1172 37 1 1.6259 -4.1884 2.1529 38 1 0.0192 -6.1371 -0.6527 39 1 1.4042 -8.4215 -0.2968 40 1 0.5943 -8.4658 -1.8811 41 1 3.7312 -8.9534 -0.0692 42 1 5.6500 -10.1820 -0.9031 43 1 6.7192 -11.4505 -3.3717 44 1 1.7882 -9.0662 -3.8503 45 1 -0.3821 -3.0285 -2.1512 46 1 -1.1136 -4.2960 -1.1173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096459837.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:30 Heat of formation + Delta-G solvation = 108.242942 kcal Electronic energy + Delta-G solvation = -28917.416790 eV Core-core repulsion = 25002.916874 eV Total energy + Delta-G solvation = -3914.499916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.40916 -39.99675 -38.60697 -37.19664 -33.82059 -32.61366 -32.28545 -32.04917 -29.40832 -29.05796 -28.95315 -28.36108 -27.01144 -24.23985 -23.61752 -21.89075 -21.21575 -20.86973 -20.27664 -19.46875 -18.50602 -18.25788 -17.15860 -16.87063 -16.64989 -15.83882 -15.34200 -15.07866 -14.98004 -14.84279 -14.55667 -14.10767 -13.99495 -13.75914 -13.48488 -13.05993 -12.36812 -12.33584 -12.10011 -11.81485 -11.79244 -11.68413 -11.61711 -11.42241 -11.00892 -10.88121 -10.86258 -10.80664 -10.47371 -10.45051 -10.18901 -10.06554 -9.83040 -9.59106 -9.31148 -9.20941 -8.90820 -8.74200 -8.43603 -7.75211 -6.87862 -5.70118 -3.07415 0.47231 1.67739 2.30098 2.48630 2.96175 3.41585 3.45004 3.47601 3.49346 3.87838 4.08862 4.38764 4.48669 4.68745 4.90798 5.03996 5.09178 5.14916 5.23598 5.37761 5.40356 5.42005 5.51247 5.56100 5.63989 5.84620 5.88466 6.00270 6.04572 6.10721 6.15470 6.31208 6.34691 6.37135 6.38682 6.57221 6.57963 6.63242 6.74227 6.75876 6.84091 6.85448 6.99943 7.04109 7.31073 7.40967 7.55758 7.78581 7.92047 8.17531 8.60393 9.13019 9.75851 10.56444 11.39971 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020029 B = 0.002326 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.623072 B =12032.916103 C =12563.999946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.157 3.843 11 H 0.152 0.848 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.129 3.871 15 H 0.084 0.916 16 C 0.128 3.872 17 H 0.082 0.918 18 N -0.714 5.714 19 C 0.509 3.491 20 O -0.533 6.533 21 C -0.108 4.108 22 C -0.014 4.014 23 C -0.133 4.133 24 C -0.048 4.048 25 C -0.205 4.205 26 C 0.077 3.923 27 N -0.430 5.430 28 H 0.442 0.558 29 N -0.310 5.310 30 C 0.111 3.889 31 C -0.095 4.095 32 C -0.141 4.141 33 H 0.253 0.747 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.395 0.605 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.187 0.813 44 H 0.126 0.874 45 H 0.064 0.936 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -24.559 -2.755 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.337 4.337 8 H 0.096 0.904 9 N -0.311 5.311 10 C 0.050 3.950 11 H 0.169 0.831 12 C -0.176 4.176 13 C -0.170 4.170 14 C 0.020 3.980 15 H 0.102 0.898 16 C 0.022 3.978 17 H 0.101 0.899 18 N -0.365 5.365 19 C 0.294 3.706 20 O -0.409 6.409 21 C -0.148 4.148 22 C -0.019 4.019 23 C -0.152 4.152 24 C -0.068 4.068 25 C -0.215 4.215 26 C -0.080 4.080 27 N -0.130 5.130 28 H 0.286 0.714 29 N -0.138 5.138 30 C -0.043 4.043 31 C -0.116 4.116 32 C -0.181 4.181 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.229 0.771 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.203 0.797 44 H 0.144 0.856 45 H 0.083 0.917 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.833 -24.039 -4.388 24.909 hybrid contribution 0.719 0.488 0.591 1.051 sum 5.552 -23.550 -3.798 24.492 Atomic orbital electron populations 1.69477 1.04968 1.24925 1.57879 1.24690 0.95652 0.97466 1.03002 0.86040 0.78503 0.83230 0.77552 1.21683 1.21715 1.20783 1.19065 0.90359 0.81919 1.42333 0.90354 1.46558 1.01524 0.98796 1.84224 1.23743 0.87597 0.94974 0.88678 0.83117 1.23025 0.95141 0.98197 1.01237 1.22915 0.97586 0.97547 0.98929 1.23174 0.96156 0.86047 0.92643 0.89770 1.22615 0.97947 0.76987 1.00276 0.89945 1.46236 1.22308 1.07153 1.60826 1.20372 0.83847 0.87697 0.78662 1.90741 1.26964 1.80431 1.42761 1.20793 0.98090 0.92315 1.03576 1.18783 0.94814 0.95170 0.93163 1.20402 0.93979 1.00813 1.00010 1.20150 0.97735 0.96774 0.92185 1.19657 0.96462 1.08922 0.96448 1.22663 0.99351 1.00239 0.85728 1.46295 1.15177 1.41430 1.10077 0.71426 1.77678 0.96868 1.19607 1.19689 1.20861 0.95551 0.97307 0.90584 1.19621 0.97005 1.00635 0.94334 1.23287 0.94123 0.98442 1.02264 0.93630 0.93667 0.92710 0.93048 0.93130 0.77107 0.87779 0.87998 0.85947 0.85831 0.79653 0.85598 0.91736 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.48 55.49 0.58 -25.74 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.92 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.21 -5.80 10.59 -15.06 -0.16 -5.96 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 9 N -0.59 -14.75 2.99 -145.53 -0.44 -15.18 16 10 C 0.16 3.50 4.70 -62.62 -0.29 3.21 16 11 H 0.15 3.87 5.60 -51.93 -0.29 3.58 16 12 C -0.14 -2.59 6.43 -24.28 -0.16 -2.74 16 13 C -0.13 -2.35 6.32 -24.22 -0.15 -2.50 16 14 C 0.13 2.70 5.36 -62.78 -0.34 2.36 16 15 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 16 C 0.13 2.39 3.13 -65.43 -0.21 2.18 16 17 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 18 N -0.71 -10.17 3.72 -51.40 -0.19 -10.36 16 19 C 0.51 7.48 7.82 -10.99 -0.09 7.39 16 20 O -0.53 -10.39 15.70 5.55 0.09 -10.30 16 21 C -0.11 -1.10 5.78 -29.03 -0.17 -1.26 16 22 C -0.01 -0.17 4.33 -105.01 -0.45 -0.63 16 23 C -0.13 -1.49 9.51 -39.96 -0.38 -1.87 16 24 C -0.05 -0.50 10.09 -39.41 -0.40 -0.90 16 25 C -0.21 -2.31 6.33 -105.19 -0.67 -2.97 16 26 C 0.08 0.59 12.07 -16.61 -0.20 0.39 16 27 N -0.43 -3.57 7.18 30.84 0.22 -3.35 16 28 H 0.44 1.86 8.96 -182.70 -1.64 0.22 16 29 N -0.31 -4.02 12.70 33.25 0.42 -3.59 16 30 C 0.11 1.50 7.49 -83.06 -0.62 0.87 16 31 C -0.09 -1.24 9.65 -39.41 -0.38 -1.62 16 32 C -0.14 -2.68 6.18 -24.26 -0.15 -2.83 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.04 0.71 7.82 -51.93 -0.41 0.31 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.77 6.41 -51.93 -0.33 0.44 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.39 4.44 7.93 -40.82 -0.32 4.11 16 39 H 0.10 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.85 7.39 -51.93 -0.38 0.47 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -35.86 373.68 -11.15 -47.01 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.53 Total: 6.03 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -4.91 Total: -7.34 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.60 Total: -58.22 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.86 -11.15 -47.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096459837.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.251 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds