Wall clock time and date at job start Tue Mar 31 2020 23:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00325 * 2 1 4 4 H 1.48499 * 109.47329 * 274.98264 * 3 2 1 5 5 H 1.48501 * 109.47088 * 34.98485 * 3 2 1 6 6 H 1.48501 * 109.47267 * 154.98071 * 3 2 1 7 7 C 1.38816 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99602 * 188.94550 * 7 2 1 9 9 N 1.36932 * 120.00275 * 8.94145 * 7 2 1 10 10 C 1.47213 * 126.70717 * 193.67285 * 9 7 2 11 11 C 1.53779 * 106.38311 * 211.29038 * 10 9 7 12 12 H 1.09002 * 112.38451 * 219.30484 * 11 10 9 13 13 C 1.54319 * 109.79110 * 95.21284 * 11 10 9 14 14 C 1.55061 * 103.93609 * 221.68810 * 13 11 10 15 15 C 1.55052 * 102.10627 * 40.06125 * 14 13 11 16 16 C 1.54323 * 103.94145 * 319.94422 * 15 14 13 17 17 N 1.46503 * 111.69115 * 262.79345 * 16 15 14 18 18 C 1.34774 * 119.99934 * 298.98248 * 17 16 15 19 19 O 1.21801 * 120.00106 * 359.97438 * 18 17 16 20 20 C 1.41691 * 120.00362 * 180.02562 * 18 17 16 21 21 C 1.39191 * 125.87890 * 179.97438 * 20 18 17 22 22 C 1.38089 * 107.67859 * 180.02562 * 21 20 18 23 23 C 1.39505 * 107.56676 * 359.97438 * 22 21 20 24 24 C 1.40617 * 132.40811 * 180.02562 * 23 22 21 25 25 C 1.36300 * 119.15842 * 179.97438 * 24 23 22 26 26 C 1.39967 * 120.03801 * 0.25615 * 25 24 23 27 27 N 1.30651 * 120.99093 * 359.47854 * 26 25 24 28 28 N 1.37156 * 108.20685 * 0.02562 * 23 22 21 29 29 C 1.48679 * 126.20322 * 14.32165 * 9 7 2 30 30 H 0.97003 * 119.99690 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.07606 * 92.05298 * 10 9 7 32 32 H 1.09007 * 110.07293 * 330.51831 * 10 9 7 33 33 H 1.09007 * 110.53186 * 103.08122 * 13 11 10 34 34 H 1.08995 * 110.66038 * 340.36247 * 13 11 10 35 35 H 1.09000 * 110.90592 * 281.85718 * 14 13 11 36 36 H 1.08998 * 110.93051 * 158.27440 * 14 13 11 37 37 H 1.09006 * 110.53321 * 201.33039 * 15 14 13 38 38 H 1.09006 * 110.53734 * 78.55897 * 15 14 13 39 39 H 0.97000 * 120.00324 * 118.98377 * 17 16 15 40 40 H 1.08004 * 126.15950 * 0.02562 * 21 20 18 41 41 H 1.07994 * 126.21261 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.42440 * 359.97438 * 24 23 22 43 43 H 1.07996 * 119.98049 * 179.97438 * 25 24 23 44 44 H 1.07994 * 119.50274 * 179.75022 * 26 25 24 45 45 H 1.09006 * 110.90957 * 29.97755 * 29 9 7 46 46 H 1.09005 * 109.94325 * 267.98231 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0804 -1.2080 0.1449 9 7 1.3380 -2.3808 -0.1854 10 6 1.8555 -3.7369 0.0603 11 6 1.1617 -4.6570 -0.9579 12 1 0.8913 -5.6218 -0.5287 13 6 2.0615 -4.8358 -2.1988 14 6 1.0743 -4.7502 -3.3914 15 6 0.1210 -3.6124 -2.9435 16 6 -0.0844 -3.8712 -1.4361 17 7 -1.3240 -4.6080 -1.1772 18 6 -2.5106 -4.0756 -1.5306 19 8 -2.5526 -2.9818 -2.0647 20 6 -3.7095 -4.7879 -1.2797 21 6 -4.9955 -4.3559 -1.5916 22 6 -5.8777 -5.3371 -1.1844 23 6 -5.1279 -6.3709 -0.6230 24 6 -5.4905 -7.6041 -0.0529 25 6 -4.5149 -8.4279 0.4238 26 6 -3.1720 -8.0408 0.3477 27 7 -2.8305 -6.8981 -0.1858 28 7 -3.8027 -6.0229 -0.6870 29 6 -0.0537 -2.5286 -0.6871 30 1 -0.4850 0.8401 0.0004 31 1 1.6130 -4.0517 1.0752 32 1 2.9349 -3.7585 -0.0907 33 1 2.5526 -5.8087 -2.1780 34 1 2.8006 -4.0367 -2.2561 35 1 0.5309 -5.6870 -3.5145 36 1 1.5959 -4.4816 -4.3101 37 1 -0.8282 -3.6772 -3.4755 38 1 0.5850 -2.6392 -3.1046 39 1 -1.2906 -5.4789 -0.7515 40 1 -5.2562 -3.4216 -2.0665 41 1 -6.9528 -5.3091 -1.2827 42 1 -6.5290 -7.8949 0.0065 43 1 -4.7785 -9.3779 0.8647 44 1 -2.4063 -8.6985 0.7317 45 1 -0.3110 -1.7155 -1.3660 46 1 -0.7506 -2.5515 0.1507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099066442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:39 Heat of formation + Delta-G solvation = 107.141022 kcal Electronic energy + Delta-G solvation = -30422.314198 eV Core-core repulsion = 26507.766499 eV Total energy + Delta-G solvation = -3914.547699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.10370 -39.88540 -38.16615 -37.06704 -34.22443 -33.80987 -32.92701 -31.42589 -30.58344 -29.61013 -28.70999 -27.55651 -25.00155 -24.60493 -24.21218 -23.29131 -21.61846 -20.71375 -20.49332 -19.82984 -18.56317 -18.05207 -17.34649 -16.75010 -16.17818 -15.95279 -15.76825 -15.51282 -14.60127 -14.43033 -14.05742 -13.88043 -13.82523 -13.58665 -13.38224 -13.26899 -13.09425 -12.78519 -12.41893 -12.39709 -12.11465 -11.82538 -11.16110 -11.02743 -10.86116 -10.85798 -10.81138 -10.63229 -10.48752 -10.46646 -10.23033 -10.04180 -9.88269 -9.82172 -9.62870 -9.36941 -9.02217 -8.48024 -8.35344 -7.86887 -6.69352 -5.61979 -2.97853 0.20007 0.85014 1.73496 2.26248 3.02398 3.47151 3.51674 3.54528 3.69950 3.81694 3.98178 4.23010 4.35378 4.58702 4.62367 4.94554 5.05285 5.13831 5.17036 5.23123 5.36999 5.42120 5.53678 5.59453 5.69042 5.78579 5.86851 5.94332 5.97537 6.02688 6.04292 6.12670 6.17842 6.23621 6.38205 6.43148 6.46309 6.62685 6.64507 6.74066 6.81179 6.90260 6.94416 7.21762 7.38056 7.59252 7.75842 7.95426 8.13700 8.37247 8.76777 9.26679 9.90320 10.62336 11.50352 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.003575 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.314677 B = 7830.051760 C = 8581.686539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.596 5.596 10 C 0.141 3.859 11 C -0.106 4.106 12 H 0.072 0.928 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.112 4.112 16 C 0.146 3.854 17 N -0.705 5.705 18 C 0.578 3.422 19 O -0.517 6.517 20 C -0.008 4.008 21 C -0.084 4.084 22 C -0.170 4.170 23 C -0.007 4.007 24 C -0.006 4.006 25 C -0.208 4.208 26 C 0.138 3.862 27 N -0.278 5.278 28 N -0.236 5.236 29 C 0.181 3.819 30 H 0.253 0.747 31 H 0.013 0.987 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.399 0.601 40 H 0.167 0.833 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.196 0.804 45 H 0.088 0.912 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 -21.129 -1.768 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.093 0.907 9 N -0.321 5.321 10 C 0.014 3.986 11 C -0.126 4.126 12 H 0.090 0.910 13 C -0.148 4.148 14 C -0.162 4.162 15 C -0.150 4.150 16 C 0.060 3.940 17 N -0.358 5.358 18 C 0.365 3.635 19 O -0.392 6.392 20 C -0.125 4.125 21 C -0.108 4.108 22 C -0.196 4.196 23 C -0.118 4.118 24 C -0.032 4.032 25 C -0.231 4.231 26 C -0.053 4.053 27 N -0.088 5.088 28 N 0.000 5.000 29 C 0.055 3.945 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.237 0.763 40 H 0.185 0.815 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.212 0.788 45 H 0.106 0.894 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -9.334 -19.641 -2.236 21.861 hybrid contribution -0.412 -0.198 0.610 0.762 sum -9.746 -19.839 -1.626 22.164 Atomic orbital electron populations 1.69977 1.04869 1.25205 1.55215 1.24890 0.95550 0.97800 1.01864 0.86166 0.78646 0.83819 0.77503 1.21586 1.21798 1.20638 1.18974 0.90706 0.82576 1.43936 0.90707 1.44753 1.12120 0.99792 1.75442 1.21299 0.96422 0.86501 0.94385 1.22794 0.94918 0.97815 0.97083 0.90999 1.22437 0.97577 1.00930 0.93839 1.22593 0.97428 0.98512 0.97697 1.22671 0.99060 0.98902 0.94378 1.22066 0.81507 0.94565 0.95896 1.46135 1.05580 1.22443 1.61648 1.15698 0.82216 0.85543 0.80059 1.90938 1.86565 1.18936 1.42797 1.19891 0.97455 0.85019 1.10142 1.21393 0.88949 1.00088 1.00398 1.21056 0.99488 0.93298 1.05739 1.19392 0.84642 0.98498 1.09290 1.20927 1.01300 0.89729 0.91282 1.21391 0.92634 1.02844 1.06259 1.23989 0.97745 0.91683 0.91920 1.75444 1.15048 1.03696 1.14579 1.45774 1.04061 1.12836 1.37310 1.21631 0.85834 0.91393 0.95646 0.93628 0.96976 0.93631 0.92536 0.90705 0.92578 0.92075 0.91667 0.90040 0.76346 0.81520 0.82658 0.82859 0.83333 0.78776 0.89395 0.96225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 10.82 55.49 0.60 -27.78 16 2 C 0.00 -0.10 5.39 -17.43 -0.09 -0.19 16 3 Si 0.91 22.92 29.56 -169.99 -5.03 17.90 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.23 -6.76 10.28 -15.06 -0.15 -6.91 16 8 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 9 N -0.60 -16.00 3.42 -169.93 -0.58 -16.58 16 10 C 0.14 3.07 6.63 -3.25 -0.02 3.05 16 11 C -0.11 -1.96 3.63 -88.53 -0.32 -2.28 16 12 H 0.07 1.17 7.71 -51.93 -0.40 0.77 16 13 C -0.11 -1.80 6.25 -24.95 -0.16 -1.95 16 14 C -0.12 -2.02 6.92 -24.56 -0.17 -2.19 16 15 C -0.11 -2.24 5.50 -24.95 -0.14 -2.38 16 16 C 0.15 3.07 0.93 -129.73 -0.12 2.95 16 17 N -0.71 -13.59 5.18 -48.50 -0.25 -13.84 16 18 C 0.58 11.69 6.88 -14.94 -0.10 11.59 16 19 O -0.52 -12.17 14.70 5.10 0.07 -12.10 16 20 C -0.01 -0.13 6.84 -83.74 -0.57 -0.71 16 21 C -0.08 -1.19 10.49 -39.28 -0.41 -1.61 16 22 C -0.17 -1.90 10.92 -39.16 -0.43 -2.33 16 23 C -0.01 -0.09 6.80 -84.11 -0.57 -0.66 16 24 C -0.01 -0.04 10.12 -39.38 -0.40 -0.44 16 25 C -0.21 -1.31 10.04 -39.63 -0.40 -1.70 16 26 C 0.14 1.10 11.29 -17.41 -0.20 0.90 16 27 N -0.28 -3.50 9.68 30.61 0.30 -3.20 16 28 N -0.24 -3.39 4.01 -8.28 -0.03 -3.43 16 29 C 0.18 4.80 3.67 -2.44 -0.01 4.80 16 30 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.94 7.63 -51.93 -0.40 0.54 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.33 7.62 -51.93 -0.40 0.93 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.34 6.64 -51.93 -0.34 1.00 16 38 H 0.08 1.84 7.57 -51.93 -0.39 1.44 16 39 H 0.40 6.89 5.89 -40.82 -0.24 6.65 16 40 H 0.17 2.22 8.06 -52.48 -0.42 1.79 16 41 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 44 H 0.20 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.09 2.67 6.22 -51.93 -0.32 2.35 16 46 H 0.02 0.59 8.05 -51.93 -0.42 0.17 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -36.94 367.62 -9.91 -46.84 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.26 Total: 6.72 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -4.26 Total: -0.07 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: 0.03 Total: -64.83 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.10 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.03 Total: 17.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.94 -9.91 -46.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099066442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.983 kcal (2) G-P(sol) polarization free energy of solvation -36.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds