Wall clock time and date at job start Tue Mar 31 2020 23:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86790 * 120.00132 * 2 1 4 4 H 1.48501 * 109.47431 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47067 * 299.99597 * 3 2 1 6 6 H 1.48499 * 109.47464 * 59.99752 * 3 2 1 7 7 C 1.38812 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99776 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.47213 * 126.70610 * 0.02562 * 9 7 2 11 11 C 1.53771 * 106.38068 * 211.28465 * 10 9 7 12 12 H 1.08999 * 112.38753 * 219.30270 * 11 10 9 13 13 C 1.54325 * 109.79129 * 95.21897 * 11 10 9 14 14 C 1.55059 * 103.93721 * 221.69135 * 13 11 10 15 15 C 1.55051 * 102.11084 * 40.05127 * 14 13 11 16 16 C 1.54327 * 103.94126 * 319.94796 * 15 14 13 17 17 N 1.46492 * 111.69142 * 262.78871 * 16 15 14 18 18 C 1.34777 * 120.00325 * 298.97712 * 17 16 15 19 19 O 1.21663 * 119.99521 * 0.02562 * 18 17 16 20 20 C 1.46931 * 120.00286 * 180.02562 * 18 17 16 21 21 C 1.36478 * 126.72704 * 359.97438 * 20 18 17 22 22 N 1.35359 * 109.77271 * 180.02562 * 21 20 18 23 23 H 0.96998 * 124.82135 * 179.97438 * 22 21 20 24 24 C 1.37854 * 110.35147 * 359.97438 * 22 21 20 25 25 C 1.39231 * 133.47591 * 180.30517 * 24 22 21 26 26 C 1.38330 * 118.30117 * 180.16036 * 25 24 22 27 27 C 1.38599 * 119.63879 * 359.49957 * 26 25 24 28 28 N 1.31633 * 121.19681 * 0.26167 * 27 26 25 29 29 C 1.32689 * 121.42612 * 359.97438 * 28 27 26 30 30 C 1.48682 * 126.20250 * 180.66835 * 9 7 2 31 31 H 0.97001 * 119.99829 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.07250 * 92.05503 * 10 9 7 33 33 H 1.09003 * 110.06892 * 330.51794 * 10 9 7 34 34 H 1.08997 * 110.53919 * 103.07620 * 13 11 10 35 35 H 1.09000 * 110.65360 * 340.35614 * 13 11 10 36 36 H 1.09003 * 110.90136 * 281.85221 * 14 13 11 37 37 H 1.08992 * 110.93463 * 158.26887 * 14 13 11 38 38 H 1.09006 * 110.53732 * 201.33363 * 15 14 13 39 39 H 1.09003 * 110.53451 * 78.56031 * 15 14 13 40 40 H 0.97004 * 120.00199 * 118.98464 * 17 16 15 41 41 H 1.07995 * 125.10745 * 0.03612 * 21 20 18 42 42 H 1.08003 * 120.84901 * 359.93963 * 25 24 22 43 43 H 1.08002 * 120.18329 * 179.78607 * 26 25 24 44 44 H 1.08007 * 119.40238 * 180.27705 * 27 26 25 45 45 H 1.09002 * 110.90464 * 29.98790 * 30 9 7 46 46 H 1.09003 * 109.94274 * 267.98418 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1366 -2.5599 -0.0005 11 6 -0.4207 -3.8623 0.7660 12 1 -1.2232 -4.4442 0.3126 13 6 -0.7354 -3.5418 2.2424 14 6 0.0224 -4.6397 3.0327 15 6 1.3532 -4.7479 2.2445 16 6 0.9206 -4.6369 0.7673 17 7 0.7879 -5.9547 0.1414 18 6 1.8571 -6.7707 0.0556 19 8 2.9324 -6.4130 0.4983 20 6 1.7242 -8.0923 -0.5727 21 6 0.5911 -8.6299 -1.1108 22 7 0.8561 -9.8656 -1.5957 23 1 0.2058 -10.4433 -2.0249 24 6 2.1814 -10.1862 -1.3928 25 6 2.9543 -11.3034 -1.6977 26 6 4.2901 -11.2947 -1.3383 27 6 4.8213 -10.1842 -0.7015 28 7 4.0760 -9.1348 -0.4257 29 6 2.7889 -9.0970 -0.7459 30 6 1.9253 -3.7484 0.0151 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5030 -2.6405 -1.0239 33 1 -0.6125 -1.7182 0.5026 34 1 -1.8074 -3.6081 2.4280 35 1 -0.3627 -2.5528 2.5089 36 1 -0.5225 -5.5834 3.0072 37 1 0.2035 -4.3250 4.0603 38 1 1.8314 -5.7095 2.4316 39 1 2.0222 -3.9292 2.5095 40 1 -0.0695 -6.2401 -0.2114 41 1 -0.3720 -8.1425 -1.1448 42 1 2.5211 -12.1565 -2.1987 43 1 4.9167 -12.1467 -1.5570 44 1 5.8658 -10.1797 -0.4266 45 1 2.8838 -3.7454 0.5341 46 1 2.0531 -4.1094 -1.0055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099121191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:41 Heat of formation + Delta-G solvation = 68.849114 kcal Electronic energy + Delta-G solvation = -29717.592157 eV Core-core repulsion = 25801.383996 eV Total energy + Delta-G solvation = -3916.208161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.88865 -39.89329 -38.20298 -37.60486 -34.26280 -33.28554 -32.92448 -31.33324 -30.46353 -29.82385 -29.15597 -27.49001 -24.54755 -24.48725 -24.01607 -23.02463 -22.69566 -20.62950 -20.44494 -19.07210 -18.70664 -18.35318 -17.20342 -16.88212 -16.35587 -15.99919 -15.50492 -15.34493 -14.98297 -14.62213 -14.42461 -13.82533 -13.70570 -13.47897 -13.38607 -13.20173 -13.02603 -12.96728 -12.79082 -12.52631 -12.39656 -11.75824 -11.20408 -10.94942 -10.85083 -10.55925 -10.53066 -10.41271 -10.20822 -10.13637 -9.95893 -9.86492 -9.84229 -9.61349 -9.47780 -9.19090 -8.74134 -8.65162 -8.51151 -8.30840 -6.77158 -5.56714 -2.99920 0.65945 1.10259 1.86652 2.57346 3.44781 3.47571 3.51702 3.52813 3.54591 3.95424 4.02562 4.33778 4.55462 4.64397 4.68055 4.76431 4.96238 5.01329 5.24980 5.25508 5.28924 5.45308 5.52981 5.60303 5.72369 5.85148 5.93309 5.97521 6.02713 6.09293 6.10291 6.20552 6.23294 6.36735 6.45412 6.51943 6.61674 6.66898 6.75534 6.91931 6.93550 6.98576 7.04220 7.28511 7.49457 7.70546 7.88681 7.97177 8.02943 8.47153 8.74823 9.29876 9.88949 10.56862 11.44768 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017969 B = 0.002845 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.855336 B = 9840.642468 C =10445.727104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.016 4.016 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.596 5.596 10 C 0.143 3.857 11 C -0.112 4.112 12 H 0.067 0.933 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.113 4.113 16 C 0.163 3.837 17 N -0.713 5.713 18 C 0.581 3.419 19 O -0.513 6.513 20 C -0.203 4.203 21 C 0.116 3.884 22 N -0.575 5.575 23 H 0.421 0.579 24 C 0.032 3.968 25 C -0.081 4.081 26 C -0.160 4.160 27 C 0.095 3.905 28 N -0.428 5.428 29 C 0.139 3.861 30 C 0.138 3.862 31 H 0.250 0.750 32 H 0.002 0.998 33 H 0.129 0.871 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.389 0.611 41 H 0.187 0.813 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.159 0.841 45 H 0.054 0.946 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 -24.994 -2.156 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.210 4.210 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.017 3.983 11 C -0.132 4.132 12 H 0.085 0.915 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.151 4.151 16 C 0.076 3.924 17 N -0.364 5.364 18 C 0.367 3.633 19 O -0.388 6.388 20 C -0.215 4.215 21 C -0.018 4.018 22 N -0.177 5.177 23 H 0.259 0.741 24 C -0.076 4.076 25 C -0.110 4.110 26 C -0.181 4.181 27 C -0.071 4.071 28 N -0.135 5.135 29 C 0.005 3.995 30 C 0.011 3.989 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.146 0.854 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.223 0.777 41 H 0.204 0.796 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.176 0.824 45 H 0.072 0.928 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.697 -23.756 -1.456 23.861 hybrid contribution -0.761 -0.546 -1.056 1.411 sum -2.458 -24.302 -2.512 24.554 Atomic orbital electron populations 1.69598 1.04817 1.24377 1.58658 1.24737 0.95713 0.97551 1.02999 0.85983 0.78755 0.83623 0.77133 1.20524 1.21903 1.21833 1.19197 0.90613 0.82251 1.41681 0.90324 1.44826 1.01580 0.99574 1.86039 1.21968 0.85612 0.94562 0.96152 1.23014 0.93965 0.98845 0.97411 0.91476 1.22436 0.98697 0.99598 0.93910 1.22594 0.96712 0.98341 0.98576 1.22662 0.96952 1.02234 0.93257 1.21770 0.97082 0.80706 0.92798 1.45914 1.11480 1.17281 1.61702 1.17061 0.84400 0.82659 0.79181 1.90846 1.26383 1.74721 1.46815 1.20181 0.91904 0.96972 1.12440 1.22230 0.99389 0.84955 0.95183 1.41319 1.08695 1.15797 1.51888 0.74080 1.19113 0.85460 0.98309 1.04694 1.20478 0.93529 0.95924 1.01037 1.21897 0.94824 1.00466 1.00919 1.22793 0.99927 0.88385 0.95992 1.67159 1.04196 1.26177 1.15986 1.19517 0.90317 0.91980 0.97734 1.21842 0.95025 0.85633 0.96406 0.93863 0.97980 0.85365 0.92668 0.90204 0.92604 0.92238 0.91609 0.90440 0.77743 0.79638 0.84970 0.84262 0.82353 0.92754 0.96493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.08 55.49 0.56 -26.22 16 2 C -0.02 -0.44 5.49 -17.43 -0.10 -0.54 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.21 -5.97 10.33 -15.06 -0.16 -6.13 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.68 3.42 -169.93 -0.58 -16.26 16 10 C 0.14 3.43 5.62 -3.25 -0.02 3.41 16 11 C -0.11 -2.08 3.63 -88.53 -0.32 -2.40 16 12 H 0.07 1.06 7.71 -51.93 -0.40 0.66 16 13 C -0.11 -1.90 6.25 -24.95 -0.16 -2.06 16 14 C -0.12 -1.98 6.92 -24.56 -0.17 -2.15 16 15 C -0.11 -2.09 5.50 -24.95 -0.14 -2.23 16 16 C 0.16 3.07 0.93 -129.73 -0.12 2.95 16 17 N -0.71 -11.03 5.18 -46.89 -0.24 -11.27 16 18 C 0.58 10.03 7.08 -12.74 -0.09 9.94 16 19 O -0.51 -11.12 14.87 5.22 0.08 -11.04 16 20 C -0.20 -2.84 6.27 -103.28 -0.65 -3.49 16 21 C 0.12 1.00 11.33 -16.63 -0.19 0.81 16 22 N -0.57 -4.12 5.98 -10.46 -0.06 -4.18 16 23 H 0.42 1.32 8.96 -40.82 -0.37 0.95 16 24 C 0.03 0.33 7.27 -83.94 -0.61 -0.28 16 25 C -0.08 -0.65 10.19 -39.18 -0.40 -1.05 16 26 C -0.16 -1.31 10.09 -39.41 -0.40 -1.71 16 27 C 0.10 1.07 11.16 -17.50 -0.20 0.87 16 28 N -0.43 -6.74 10.41 -9.70 -0.10 -6.84 16 29 C 0.14 2.03 7.35 -82.92 -0.61 1.42 16 30 C 0.14 3.22 5.36 -2.43 -0.01 3.21 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 33 H 0.13 3.43 4.93 -51.93 -0.26 3.17 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.64 7.62 -51.93 -0.40 1.25 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.25 6.64 -51.93 -0.34 0.90 16 39 H 0.08 1.61 7.57 -51.93 -0.39 1.22 16 40 H 0.39 4.53 7.17 -40.82 -0.29 4.24 16 41 H 0.19 0.83 7.37 -52.49 -0.39 0.44 16 42 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.16 1.34 8.06 -52.48 -0.42 0.91 16 45 H 0.05 1.35 7.52 -51.93 -0.39 0.96 16 46 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -37.35 368.02 -10.30 -47.66 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.15 Total: 4.54 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -4.33 Total: 0.57 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.43 Total: -64.79 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.35 -10.30 -47.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099121191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.508 kcal (2) G-P(sol) polarization free energy of solvation -37.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds