Wall clock time and date at job start Tue Mar 31 2020 23:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86790 * 120.00132 * 2 1 4 4 H 1.48501 * 109.47431 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47067 * 299.99597 * 3 2 1 6 6 H 1.48499 * 109.47464 * 59.99752 * 3 2 1 7 7 C 1.38812 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99776 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.47213 * 126.70610 * 0.02562 * 9 7 2 11 11 C 1.53771 * 106.38068 * 211.28465 * 10 9 7 12 12 H 1.08999 * 112.38753 * 219.30270 * 11 10 9 13 13 C 1.54325 * 109.79129 * 95.21897 * 11 10 9 14 14 C 1.55059 * 103.93721 * 221.69135 * 13 11 10 15 15 C 1.55051 * 102.11084 * 40.05127 * 14 13 11 16 16 C 1.54327 * 103.94126 * 319.94796 * 15 14 13 17 17 N 1.46492 * 111.69142 * 262.78871 * 16 15 14 18 18 C 1.34777 * 120.00325 * 298.97712 * 17 16 15 19 19 O 1.21663 * 119.99521 * 0.02562 * 18 17 16 20 20 C 1.46931 * 120.00286 * 180.02562 * 18 17 16 21 21 C 1.36478 * 126.72704 * 359.97438 * 20 18 17 22 22 N 1.35359 * 109.77271 * 180.02562 * 21 20 18 23 23 H 0.96998 * 124.82135 * 179.97438 * 22 21 20 24 24 C 1.37854 * 110.35147 * 359.97438 * 22 21 20 25 25 C 1.39231 * 133.47591 * 180.30517 * 24 22 21 26 26 C 1.38330 * 118.30117 * 180.16036 * 25 24 22 27 27 C 1.38599 * 119.63879 * 359.49957 * 26 25 24 28 28 N 1.31633 * 121.19681 * 0.26167 * 27 26 25 29 29 C 1.32689 * 121.42612 * 359.97438 * 28 27 26 30 30 C 1.48682 * 126.20250 * 180.66835 * 9 7 2 31 31 H 0.97001 * 119.99829 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.07250 * 92.05503 * 10 9 7 33 33 H 1.09003 * 110.06892 * 330.51794 * 10 9 7 34 34 H 1.08997 * 110.53919 * 103.07620 * 13 11 10 35 35 H 1.09000 * 110.65360 * 340.35614 * 13 11 10 36 36 H 1.09003 * 110.90136 * 281.85221 * 14 13 11 37 37 H 1.08992 * 110.93463 * 158.26887 * 14 13 11 38 38 H 1.09006 * 110.53732 * 201.33363 * 15 14 13 39 39 H 1.09003 * 110.53451 * 78.56031 * 15 14 13 40 40 H 0.97004 * 120.00199 * 118.98464 * 17 16 15 41 41 H 1.07995 * 125.10745 * 0.03612 * 21 20 18 42 42 H 1.08003 * 120.84901 * 359.93963 * 25 24 22 43 43 H 1.08002 * 120.18329 * 179.78607 * 26 25 24 44 44 H 1.08007 * 119.40238 * 180.27705 * 27 26 25 45 45 H 1.09002 * 110.90464 * 29.98790 * 30 9 7 46 46 H 1.09003 * 109.94274 * 267.98418 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1366 -2.5599 -0.0005 11 6 -0.4207 -3.8623 0.7660 12 1 -1.2232 -4.4442 0.3126 13 6 -0.7354 -3.5418 2.2424 14 6 0.0224 -4.6397 3.0327 15 6 1.3532 -4.7479 2.2445 16 6 0.9206 -4.6369 0.7673 17 7 0.7879 -5.9547 0.1414 18 6 1.8571 -6.7707 0.0556 19 8 2.9324 -6.4130 0.4983 20 6 1.7242 -8.0923 -0.5727 21 6 0.5911 -8.6299 -1.1108 22 7 0.8561 -9.8656 -1.5957 23 1 0.2058 -10.4433 -2.0249 24 6 2.1814 -10.1862 -1.3928 25 6 2.9543 -11.3034 -1.6977 26 6 4.2901 -11.2947 -1.3383 27 6 4.8213 -10.1842 -0.7015 28 7 4.0760 -9.1348 -0.4257 29 6 2.7889 -9.0970 -0.7459 30 6 1.9253 -3.7484 0.0151 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5030 -2.6405 -1.0239 33 1 -0.6125 -1.7182 0.5026 34 1 -1.8074 -3.6081 2.4280 35 1 -0.3627 -2.5528 2.5089 36 1 -0.5225 -5.5834 3.0072 37 1 0.2035 -4.3250 4.0603 38 1 1.8314 -5.7095 2.4316 39 1 2.0222 -3.9292 2.5095 40 1 -0.0695 -6.2401 -0.2114 41 1 -0.3720 -8.1425 -1.1448 42 1 2.5211 -12.1565 -2.1987 43 1 4.9167 -12.1467 -1.5570 44 1 5.8658 -10.1797 -0.4266 45 1 2.8838 -3.7454 0.5341 46 1 2.0531 -4.1094 -1.0055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099121191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:40 Heat of formation + Delta-G solvation = 40.796186 kcal Electronic energy + Delta-G solvation = -29718.808623 eV Core-core repulsion = 25801.383996 eV Total energy + Delta-G solvation = -3917.424627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.65848 -41.37697 -39.27470 -38.76485 -36.16277 -34.64416 -33.73391 -33.33696 -31.44530 -30.90959 -30.48541 -29.15937 -26.32521 -26.27491 -24.75972 -24.23349 -23.43253 -22.32164 -21.94479 -20.37605 -20.07956 -19.30518 -18.88385 -17.85429 -17.38732 -17.00382 -16.95389 -16.66947 -16.27699 -15.82247 -15.69446 -15.41391 -15.20957 -15.05477 -14.76135 -14.56673 -14.32562 -14.04848 -13.70734 -13.57399 -13.56891 -13.23931 -13.06822 -12.82654 -12.73174 -12.15326 -12.06735 -12.01904 -11.80981 -11.70608 -11.63295 -11.55190 -11.39145 -11.24911 -10.79552 -10.71582 -10.15677 -9.97440 -9.49238 -9.15382 -8.89518 -7.75042 -5.22170 -0.04876 0.32192 1.03336 1.45436 1.46224 1.57019 1.94718 2.23677 2.45963 2.50186 3.03586 3.30505 3.32908 3.49432 3.67189 3.73338 3.84363 3.88976 3.93822 4.02230 4.14484 4.34962 4.41709 4.45025 4.49012 4.56251 4.64046 4.68163 4.74195 4.76638 4.82349 4.97576 5.01349 5.07769 5.14052 5.15948 5.24582 5.27292 5.31706 5.35534 5.43675 5.49593 5.65445 5.77781 5.87183 5.89110 6.40111 6.47087 6.81192 7.12503 7.22708 7.51917 7.74988 8.42779 9.23358 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017969 B = 0.002845 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.855336 B = 9840.642468 C =10445.727104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.059 4.059 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.238 4.238 8 H 0.067 0.933 9 N -0.615 5.615 10 C 0.144 3.856 11 C -0.099 4.099 12 H 0.113 0.887 13 C -0.104 4.104 14 C -0.108 4.108 15 C -0.110 4.110 16 C 0.177 3.823 17 N -0.697 5.697 18 C 0.580 3.420 19 O -0.575 6.575 20 C -0.269 4.269 21 C 0.168 3.832 22 N -0.548 5.548 23 H 0.446 0.554 24 C 0.026 3.974 25 C -0.068 4.068 26 C -0.156 4.156 27 C 0.079 3.921 28 N -0.499 5.499 29 C 0.094 3.906 30 C 0.142 3.858 31 H 0.250 0.750 32 H -0.016 1.016 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.412 0.588 41 H 0.236 0.764 42 H 0.178 0.822 43 H 0.179 0.821 44 H 0.170 0.830 45 H 0.022 0.978 46 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 -28.494 -3.020 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.251 4.251 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.367 4.367 8 H 0.085 0.915 9 N -0.340 5.340 10 C 0.019 3.981 11 C -0.118 4.118 12 H 0.131 0.869 13 C -0.142 4.142 14 C -0.145 4.145 15 C -0.149 4.149 16 C 0.090 3.910 17 N -0.350 5.350 18 C 0.369 3.631 19 O -0.454 6.454 20 C -0.281 4.281 21 C 0.031 3.969 22 N -0.151 5.151 23 H 0.289 0.711 24 C -0.082 4.082 25 C -0.096 4.096 26 C -0.176 4.176 27 C -0.086 4.086 28 N -0.207 5.207 29 C -0.039 4.039 30 C 0.015 3.985 31 H 0.060 0.940 32 H 0.002 0.998 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.250 0.750 41 H 0.252 0.748 42 H 0.195 0.805 43 H 0.196 0.804 44 H 0.187 0.813 45 H 0.041 0.959 46 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -4.772 -27.336 -2.357 27.849 hybrid contribution 0.255 0.456 -0.886 1.028 sum -4.516 -26.880 -3.243 27.449 Atomic orbital electron populations 1.69824 1.05718 1.24945 1.58525 1.25499 0.96736 1.00337 1.02574 0.85013 0.77715 0.79497 0.77116 1.20154 1.21439 1.21195 1.19396 0.90579 0.83895 1.42807 0.91546 1.45057 1.02890 0.99895 1.86149 1.21857 0.83978 0.96768 0.95520 1.22927 0.94779 0.96263 0.97879 0.86930 1.22358 1.00848 0.98011 0.92980 1.22544 0.94429 0.99323 0.98241 1.22547 0.98199 1.00326 0.93847 1.21353 0.95765 0.81671 0.92259 1.45600 1.12490 1.15506 1.61405 1.17618 0.83529 0.83803 0.78113 1.90807 1.28732 1.76252 1.49652 1.19982 0.94556 0.96290 1.17255 1.22801 0.99179 0.84387 0.90573 1.41315 1.08064 1.15451 1.50277 0.71066 1.19232 0.86599 0.97910 1.04501 1.21032 0.93099 0.96118 0.99380 1.22286 0.95642 1.00303 0.99405 1.23221 1.00440 0.88770 0.96182 1.67048 1.05911 1.28874 1.18906 1.19935 0.90550 0.93979 0.99478 1.21819 0.95302 0.85769 0.95623 0.93981 0.99847 0.87830 0.89108 0.94219 0.89128 0.91217 0.92282 0.94140 0.74987 0.74762 0.80495 0.80360 0.81329 0.95922 0.98277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.95 10.08 21.65 0.22 -55.73 16 2 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 3 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.24 -14.39 10.33 84.03 0.87 -13.52 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.61 -34.31 3.42 -691.54 -2.37 -36.68 16 10 C 0.14 7.11 5.62 86.50 0.49 7.60 16 11 C -0.10 -3.55 3.63 -9.44 -0.03 -3.59 16 12 H 0.11 3.07 7.71 -2.39 -0.02 3.06 16 13 C -0.10 -3.48 6.25 31.75 0.20 -3.28 16 14 C -0.11 -3.22 6.92 32.00 0.22 -3.00 16 15 C -0.11 -4.25 5.50 31.75 0.17 -4.08 16 16 C 0.18 6.81 0.93 4.96 0.00 6.81 16 17 N -0.70 -21.11 5.18 -420.50 -2.18 -23.28 16 18 C 0.58 20.71 7.08 86.52 0.61 21.32 16 19 O -0.58 -27.13 14.87 -4.23 -0.06 -27.19 16 20 C -0.27 -7.41 6.27 -19.00 -0.12 -7.53 16 21 C 0.17 2.25 11.33 83.74 0.95 3.20 16 22 N -0.55 -5.45 5.98 -187.01 -1.12 -6.57 16 23 H 0.45 0.18 8.96 -92.71 -0.83 -0.65 16 24 C 0.03 0.46 7.27 38.98 0.28 0.75 16 25 C -0.07 -0.85 10.19 22.53 0.23 -0.62 16 26 C -0.16 -2.18 10.09 22.38 0.23 -1.95 16 27 C 0.08 1.82 11.16 84.81 0.95 2.76 16 28 N -0.50 -16.74 10.41 -184.61 -1.92 -18.66 16 29 C 0.09 2.78 7.35 41.98 0.31 3.09 16 30 C 0.14 7.12 5.36 86.22 0.46 7.58 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 32 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.10 5.71 4.93 -2.39 -0.01 5.70 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.04 1.65 7.62 -2.39 -0.02 1.63 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 2.35 6.64 -2.38 -0.02 2.33 16 39 H 0.04 1.82 7.57 -2.39 -0.02 1.80 16 40 H 0.41 8.25 7.17 -92.71 -0.66 7.58 16 41 H 0.24 0.62 7.37 -2.91 -0.02 0.60 16 42 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 43 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 44 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 45 H 0.02 1.24 7.52 -2.39 -0.02 1.23 16 46 H 0.00 -0.03 8.05 -2.39 -0.02 -0.05 16 Total: -1.00 -93.82 368.02 0.42 -93.39 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -0.46 Total: 12.50 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.28 Total: 12.56 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -7.37 Total: -140.92 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.06 Total: -27.19 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -93.82 0.42 -93.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099121191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.187 kcal (2) G-P(sol) polarization free energy of solvation -93.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds