Wall clock time and date at job start Tue Mar 31 2020 23:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81395 * 103.00317 * 2 1 4 4 H 1.08997 * 109.47398 * 54.99663 * 3 2 1 5 5 C 1.53003 * 109.46859 * 294.99895 * 3 2 1 6 6 C 1.52998 * 109.47125 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47197 * 59.99632 * 6 5 3 8 8 C 1.52999 * 109.47028 * 300.00215 * 7 6 5 9 9 H 1.09004 * 109.46532 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47266 * 299.99849 * 8 7 6 11 11 C 1.34782 * 119.99706 * 275.00120 * 10 8 7 12 12 O 1.21349 * 120.00152 * 0.02562 * 11 10 8 13 13 C 1.49447 * 119.99619 * 179.97438 * 11 10 8 14 14 O 1.21351 * 120.00281 * 354.95467 * 13 11 10 15 15 N 1.34776 * 119.99919 * 174.94825 * 13 11 10 16 16 C 1.46505 * 120.00282 * 185.06645 * 15 13 11 17 17 C 1.52996 * 109.47403 * 185.00844 * 16 15 13 18 18 C 1.50698 * 115.55176 * 269.60614 * 17 16 15 19 19 H 1.08004 * 119.99763 * 95.24190 * 18 17 16 20 20 C 1.37875 * 120.00264 * 275.24840 * 18 17 16 21 21 N 1.31519 * 119.99433 * 5.14621 * 20 18 17 22 22 Si 1.86795 * 120.00102 * 185.14681 * 20 18 17 23 23 H 1.48496 * 109.47323 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47328 * 119.99998 * 22 20 18 25 25 H 1.48504 * 109.47182 * 239.99843 * 22 20 18 26 26 C 1.53002 * 117.49825 * 123.89525 * 17 16 15 27 27 C 1.52998 * 60.00242 * 252.51271 * 26 17 16 28 28 C 1.52995 * 109.47275 * 174.99634 * 3 2 1 29 29 H 1.08998 * 109.47248 * 60.00243 * 1 2 3 30 30 H 1.09004 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47105 * 300.00195 * 1 2 3 32 32 H 1.08995 * 109.47151 * 60.00214 * 5 3 2 33 33 H 1.09000 * 109.46688 * 299.99596 * 5 3 2 34 34 H 1.09005 * 109.47060 * 300.00106 * 6 5 3 35 35 H 1.09002 * 109.47356 * 180.02562 * 6 5 3 36 36 H 1.08997 * 109.46882 * 59.99984 * 7 6 5 37 37 H 1.09001 * 109.46859 * 180.02562 * 7 6 5 38 38 H 0.96993 * 119.99959 * 94.99983 * 10 8 7 39 39 H 0.97005 * 120.00056 * 5.06922 * 15 13 11 40 40 H 1.09003 * 109.46575 * 305.01173 * 16 15 13 41 41 H 1.09002 * 109.46982 * 65.00831 * 16 15 13 42 42 H 0.96999 * 119.99105 * 185.00553 * 21 20 18 43 43 H 1.08997 * 117.50082 * 0.02562 * 26 17 16 44 44 H 1.08999 * 117.49362 * 145.02056 * 26 17 16 45 45 H 1.09002 * 117.49753 * 252.51434 * 27 26 17 46 46 H 1.09001 * 117.50108 * 107.48897 * 27 26 17 47 47 H 1.09008 * 109.47225 * 60.00012 * 28 3 2 48 48 H 1.09002 * 109.47354 * 300.00195 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 0.8417 5 6 1.7429 2.4015 -1.3074 6 6 2.0877 3.8921 -1.3077 7 6 3.6027 4.0652 -1.1822 8 6 4.0818 3.4311 0.1252 9 1 5.1611 3.5549 0.2147 10 7 3.4202 4.0856 1.2566 11 6 3.9314 5.2218 1.7708 12 8 4.9394 5.7028 1.2964 13 6 3.2561 5.8897 2.9246 14 8 2.1992 5.4618 3.3398 15 7 3.8211 6.9674 3.5043 16 6 3.2179 7.5550 4.7032 17 6 3.9750 8.8291 5.0829 18 6 5.1301 8.6404 6.0321 19 1 6.1333 8.5314 5.6469 20 6 4.9065 8.6067 7.3921 21 7 3.6766 8.6375 7.8571 22 14 6.3501 8.5175 8.5742 23 1 7.6196 8.4940 7.8042 24 1 6.3335 9.7045 9.4663 25 1 6.2448 7.2823 9.3918 26 6 3.1662 10.1224 5.2019 27 6 4.1088 9.9162 4.0145 28 6 3.7370 1.9411 0.1258 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.6637 2.2778 -1.3970 33 1 2.2356 1.9148 -2.1491 34 1 1.5954 4.3791 -0.4659 35 1 1.7458 4.3439 -2.2389 36 1 4.0949 3.5782 -2.0240 37 1 3.8482 5.1272 -1.1820 38 1 2.6143 3.7013 1.6355 39 1 4.6271 7.3540 3.1276 40 1 2.1745 7.7983 4.5028 41 1 3.2732 6.8409 5.5249 42 1 3.5209 8.6872 8.8133 43 1 2.0948 10.0655 5.0101 44 1 3.4696 10.8370 5.9671 45 1 5.0323 10.4951 3.9986 46 1 3.6576 9.7236 3.0412 47 1 4.2297 1.4544 -0.7160 48 1 4.0784 1.4893 1.0572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117446466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:28 Heat of formation + Delta-G solvation = -65.548587 kcal Electronic energy + Delta-G solvation = -27615.430342 eV Core-core repulsion = 23796.545460 eV Total energy + Delta-G solvation = -3818.884882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69566 -39.13712 -37.79496 -36.78871 -34.21869 -33.22046 -31.98045 -31.29918 -30.43918 -29.05332 -27.10499 -25.51228 -23.93684 -23.13588 -22.62784 -21.32174 -20.27204 -19.50210 -19.44786 -18.28124 -16.95028 -16.44819 -16.18457 -15.83575 -15.56267 -15.46560 -14.95826 -14.74484 -14.62735 -14.30124 -14.10354 -13.86939 -13.68400 -13.55790 -13.43882 -13.11800 -12.67036 -12.64547 -12.55726 -12.25392 -11.96968 -11.86034 -11.59095 -11.37301 -11.17337 -11.06895 -10.94577 -10.93170 -10.60488 -10.54403 -10.31563 -10.11729 -9.72008 -9.33903 -9.27190 -9.02791 -8.53359 -8.40875 -8.27100 -8.04247 -6.12021 -4.20083 1.29691 1.71731 2.19298 2.60733 3.24776 3.34019 3.37533 3.53061 3.94882 4.17416 4.21288 4.34913 4.49139 4.68451 4.73461 4.76484 4.80669 4.83026 4.92520 4.97487 5.17273 5.17660 5.20947 5.27669 5.35722 5.41563 5.58039 5.59170 5.67498 5.80979 5.90098 5.93168 5.96053 6.24660 6.28128 6.33705 6.49736 6.61597 6.69976 6.93540 7.02918 7.16614 7.35813 7.42722 7.76996 7.79836 8.06641 8.30106 8.44314 8.83055 9.47607 10.96592 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.002323 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.073582 B =12051.583384 C =12462.874836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.263 6.263 3 C -0.055 4.055 4 H 0.088 0.912 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.150 3.850 9 H 0.099 0.901 10 N -0.702 5.702 11 C 0.510 3.490 12 O -0.519 6.519 13 C 0.494 3.506 14 O -0.538 6.538 15 N -0.674 5.674 16 C 0.159 3.841 17 C 0.025 3.975 18 C -0.499 4.499 19 H 0.062 0.938 20 C 0.072 3.928 21 N -0.875 5.875 22 Si 0.890 3.110 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 C -0.145 4.145 27 C -0.209 4.209 28 C -0.107 4.107 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.409 0.591 39 H 0.411 0.589 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.261 0.739 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.893 -13.728 -18.826 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.034 6.034 3 C -0.184 4.184 4 H 0.106 0.894 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.171 4.171 8 C 0.044 3.956 9 H 0.117 0.883 10 N -0.357 5.357 11 C 0.291 3.709 12 O -0.394 6.394 13 C 0.273 3.727 14 O -0.416 6.416 15 N -0.324 5.324 16 C 0.037 3.963 17 C 0.024 3.976 18 C -0.536 4.536 19 H 0.081 0.919 20 C -0.132 4.132 21 N -0.511 5.511 22 Si 0.718 3.282 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.183 4.183 27 C -0.246 4.246 28 C -0.146 4.146 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.246 0.754 39 H 0.246 0.754 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.358 -14.675 -18.629 24.112 hybrid contribution -0.291 1.009 0.853 1.353 sum -4.650 -13.666 -17.776 22.899 Atomic orbital electron populations 1.23406 0.94072 1.06449 1.05137 1.86860 1.07579 1.11006 1.97931 1.23216 1.00049 0.93591 1.01500 0.89355 1.21878 1.01036 0.96025 0.96245 1.21551 0.96292 0.95383 1.02555 1.21960 0.96057 1.02180 0.96880 1.21019 0.98608 0.90485 0.85481 0.88259 1.45902 1.30542 1.25473 1.33756 1.20511 0.84601 0.81634 0.84124 1.90743 1.24081 1.63618 1.60970 1.19979 0.85851 0.82595 0.84236 1.90722 1.21893 1.64706 1.64327 1.46109 1.29655 1.27899 1.28748 1.21395 0.94793 0.96211 0.83904 1.19072 0.97321 0.85399 0.95767 1.20472 0.92010 1.51192 0.89966 0.91939 1.24991 0.95611 0.94346 0.98275 1.70022 1.19024 1.48503 1.13591 0.86565 0.82907 0.77678 0.81067 1.19644 1.20909 1.20970 1.22539 0.94579 1.02604 0.98619 1.22990 1.01557 1.07190 0.92876 1.21654 0.92934 0.95438 1.04554 0.90404 0.88158 0.90292 0.91782 0.90472 0.91533 0.91293 0.90534 0.90740 0.75385 0.75354 0.93141 0.90348 0.92888 0.91617 0.89699 0.90051 0.91504 0.89112 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.45 101.05 1.06 0.29 16 2 S -0.26 -2.21 21.79 -107.50 -2.34 -4.55 16 3 C -0.05 -0.42 2.48 -26.73 -0.07 -0.48 16 4 H 0.09 0.73 6.51 -51.93 -0.34 0.39 16 5 C -0.11 -0.76 5.11 -26.73 -0.14 -0.89 16 6 C -0.12 -0.89 5.77 -26.73 -0.15 -1.05 16 7 C -0.13 -1.10 5.60 -26.73 -0.15 -1.25 16 8 C 0.15 1.39 2.78 -67.96 -0.19 1.20 16 9 H 0.10 1.02 7.58 -51.93 -0.39 0.62 16 10 N -0.70 -8.17 4.22 -54.26 -0.23 -8.40 16 11 C 0.51 7.78 7.85 -11.58 -0.09 7.69 16 12 O -0.52 -8.77 16.15 5.50 0.09 -8.68 16 13 C 0.49 8.91 7.88 -11.59 -0.09 8.82 16 14 O -0.54 -10.65 16.47 5.50 0.09 -10.56 16 15 N -0.67 -12.97 5.40 -60.73 -0.33 -13.29 16 16 C 0.16 3.53 5.71 -4.04 -0.02 3.50 16 17 C 0.03 0.59 1.46 -155.66 -0.23 0.36 16 18 C -0.50 -12.97 8.77 -34.44 -0.30 -13.27 16 19 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 20 C 0.07 1.90 5.40 -17.82 -0.10 1.80 16 21 N -0.88 -24.02 12.91 55.43 0.72 -23.30 16 22 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.15 -3.25 9.38 -26.73 -0.25 -3.50 16 27 C -0.21 -4.27 9.50 -26.73 -0.25 -4.53 16 28 C -0.11 -0.82 4.89 -26.76 -0.13 -0.95 16 29 H 0.08 0.42 7.14 -51.92 -0.37 0.04 16 30 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.41 6.92 -51.93 -0.36 0.05 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.59 7.60 -51.93 -0.39 0.20 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.41 4.55 6.35 -40.82 -0.26 4.29 16 39 H 0.41 7.64 7.70 -40.82 -0.31 7.32 16 40 H 0.05 1.12 7.83 -51.93 -0.41 0.71 16 41 H 0.08 1.96 8.04 -51.93 -0.42 1.54 16 42 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 43 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 44 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 45 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 400.23 15.07 6.03 6.03 Total: -1.00 -28.89 400.23 -9.97 -38.86 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -7.87 Total: 10.55 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.11 Total: -2.25 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.16 Total: -44.99 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.18 Total: -19.24 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -2.34 Total: -4.55 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.89 -9.97 -38.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117446466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.688 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds