Wall clock time and date at job start Tue Mar 31 2020 23:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81395 * 103.00317 * 2 1 4 4 H 1.08997 * 109.47398 * 54.99663 * 3 2 1 5 5 C 1.53003 * 109.46859 * 294.99895 * 3 2 1 6 6 C 1.52998 * 109.47125 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47197 * 59.99632 * 6 5 3 8 8 C 1.52999 * 109.47028 * 300.00215 * 7 6 5 9 9 H 1.09004 * 109.46532 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47266 * 299.99849 * 8 7 6 11 11 C 1.34782 * 119.99706 * 275.00120 * 10 8 7 12 12 O 1.21349 * 120.00152 * 0.02562 * 11 10 8 13 13 C 1.49447 * 119.99619 * 179.97438 * 11 10 8 14 14 O 1.21351 * 120.00281 * 354.95467 * 13 11 10 15 15 N 1.34776 * 119.99919 * 174.94825 * 13 11 10 16 16 C 1.46505 * 120.00282 * 185.06645 * 15 13 11 17 17 C 1.52996 * 109.47403 * 185.00844 * 16 15 13 18 18 C 1.50698 * 115.55176 * 269.60614 * 17 16 15 19 19 H 1.08004 * 119.99763 * 95.24190 * 18 17 16 20 20 C 1.37875 * 120.00264 * 275.24840 * 18 17 16 21 21 N 1.31519 * 119.99433 * 5.14621 * 20 18 17 22 22 Si 1.86795 * 120.00102 * 185.14681 * 20 18 17 23 23 H 1.48496 * 109.47323 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47328 * 119.99998 * 22 20 18 25 25 H 1.48504 * 109.47182 * 239.99843 * 22 20 18 26 26 C 1.53002 * 117.49825 * 123.89525 * 17 16 15 27 27 C 1.52998 * 60.00242 * 252.51271 * 26 17 16 28 28 C 1.52995 * 109.47275 * 174.99634 * 3 2 1 29 29 H 1.08998 * 109.47248 * 60.00243 * 1 2 3 30 30 H 1.09004 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47105 * 300.00195 * 1 2 3 32 32 H 1.08995 * 109.47151 * 60.00214 * 5 3 2 33 33 H 1.09000 * 109.46688 * 299.99596 * 5 3 2 34 34 H 1.09005 * 109.47060 * 300.00106 * 6 5 3 35 35 H 1.09002 * 109.47356 * 180.02562 * 6 5 3 36 36 H 1.08997 * 109.46882 * 59.99984 * 7 6 5 37 37 H 1.09001 * 109.46859 * 180.02562 * 7 6 5 38 38 H 0.96993 * 119.99959 * 94.99983 * 10 8 7 39 39 H 0.97005 * 120.00056 * 5.06922 * 15 13 11 40 40 H 1.09003 * 109.46575 * 305.01173 * 16 15 13 41 41 H 1.09002 * 109.46982 * 65.00831 * 16 15 13 42 42 H 0.96999 * 119.99105 * 185.00553 * 21 20 18 43 43 H 1.08997 * 117.50082 * 0.02562 * 26 17 16 44 44 H 1.08999 * 117.49362 * 145.02056 * 26 17 16 45 45 H 1.09002 * 117.49753 * 252.51434 * 27 26 17 46 46 H 1.09001 * 117.50108 * 107.48897 * 27 26 17 47 47 H 1.09008 * 109.47225 * 60.00012 * 28 3 2 48 48 H 1.09002 * 109.47354 * 300.00195 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 0.8417 5 6 1.7429 2.4015 -1.3074 6 6 2.0877 3.8921 -1.3077 7 6 3.6027 4.0652 -1.1822 8 6 4.0818 3.4311 0.1252 9 1 5.1611 3.5549 0.2147 10 7 3.4202 4.0856 1.2566 11 6 3.9314 5.2218 1.7708 12 8 4.9394 5.7028 1.2964 13 6 3.2561 5.8897 2.9246 14 8 2.1992 5.4618 3.3398 15 7 3.8211 6.9674 3.5043 16 6 3.2179 7.5550 4.7032 17 6 3.9750 8.8291 5.0829 18 6 5.1301 8.6404 6.0321 19 1 6.1333 8.5314 5.6469 20 6 4.9065 8.6067 7.3921 21 7 3.6766 8.6375 7.8571 22 14 6.3501 8.5175 8.5742 23 1 7.6196 8.4940 7.8042 24 1 6.3335 9.7045 9.4663 25 1 6.2448 7.2823 9.3918 26 6 3.1662 10.1224 5.2019 27 6 4.1088 9.9162 4.0145 28 6 3.7370 1.9411 0.1258 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.6637 2.2778 -1.3970 33 1 2.2356 1.9148 -2.1491 34 1 1.5954 4.3791 -0.4659 35 1 1.7458 4.3439 -2.2389 36 1 4.0949 3.5782 -2.0240 37 1 3.8482 5.1272 -1.1820 38 1 2.6143 3.7013 1.6355 39 1 4.6271 7.3540 3.1276 40 1 2.1745 7.7983 4.5028 41 1 3.2732 6.8409 5.5249 42 1 3.5209 8.6872 8.8133 43 1 2.0948 10.0655 5.0101 44 1 3.4696 10.8370 5.9671 45 1 5.0323 10.4951 3.9986 46 1 3.6576 9.7236 3.0412 47 1 4.2297 1.4544 -0.7160 48 1 4.0784 1.4893 1.0572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117446466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:27 Heat of formation + Delta-G solvation = -82.166936 kcal Electronic energy + Delta-G solvation = -27616.150968 eV Core-core repulsion = 23796.545460 eV Total energy + Delta-G solvation = -3819.605508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.88282 -40.31980 -38.97666 -38.50158 -35.45461 -34.58078 -33.95135 -31.93563 -31.21791 -29.59471 -28.74965 -27.42512 -25.23196 -23.78429 -23.43421 -23.00917 -21.55957 -21.26417 -20.30058 -19.72600 -18.05104 -17.89369 -17.45683 -17.03843 -16.60575 -16.56909 -16.32266 -16.27516 -15.85282 -15.42222 -15.23285 -14.90339 -14.79851 -14.39847 -14.30861 -14.24458 -13.91600 -13.68443 -13.41124 -13.33079 -13.22492 -13.00677 -12.88569 -12.83523 -12.72857 -12.59471 -12.37014 -12.05897 -11.82096 -11.58780 -11.53612 -11.25863 -10.91305 -10.76880 -10.74349 -10.49326 -10.25272 -10.11186 -10.03690 -8.68286 -8.13692 -6.26302 0.35942 0.71315 1.34589 1.40475 1.44285 1.53825 1.63024 2.15783 2.41932 2.66532 3.15676 3.38874 3.53585 3.55633 3.60627 3.80299 4.03415 4.09354 4.17341 4.26464 4.32316 4.34225 4.35813 4.51404 4.54461 4.56679 4.57351 4.69785 4.73361 4.87942 4.88159 4.94388 4.98548 4.98702 5.05939 5.16941 5.20988 5.24192 5.27971 5.31464 5.41839 5.57699 5.62380 5.75272 5.96586 6.34390 6.40999 6.74089 6.82094 6.98128 7.43717 8.94736 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.002323 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.073582 B =12051.583384 C =12462.874836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.297 6.297 3 C -0.049 4.049 4 H 0.079 0.921 5 C -0.105 4.105 6 C -0.115 4.115 7 C -0.128 4.128 8 C 0.148 3.852 9 H 0.093 0.907 10 N -0.684 5.684 11 C 0.518 3.482 12 O -0.536 6.536 13 C 0.494 3.506 14 O -0.557 6.557 15 N -0.675 5.675 16 C 0.177 3.823 17 C 0.000 4.000 18 C -0.509 4.509 19 H 0.057 0.943 20 C 0.027 3.973 21 N -0.904 5.904 22 Si 0.948 3.052 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.285 1.285 26 C -0.151 4.151 27 C -0.178 4.178 28 C -0.099 4.099 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.413 0.587 39 H 0.415 0.585 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.261 0.739 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -14.546 -20.771 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.068 6.068 3 C -0.177 4.177 4 H 0.098 0.902 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.167 4.167 8 C 0.043 3.957 9 H 0.111 0.889 10 N -0.338 5.338 11 C 0.298 3.702 12 O -0.413 6.413 13 C 0.274 3.726 14 O -0.436 6.436 15 N -0.325 5.325 16 C 0.054 3.946 17 C -0.001 4.001 18 C -0.547 4.547 19 H 0.075 0.925 20 C -0.174 4.174 21 N -0.541 5.541 22 Si 0.774 3.226 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.212 1.212 26 C -0.189 4.189 27 C -0.215 4.215 28 C -0.138 4.138 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.251 0.749 39 H 0.251 0.749 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.125 0.875 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.199 -15.519 -20.606 26.136 hybrid contribution -0.388 1.194 1.412 1.889 sum -4.587 -14.325 -19.194 24.386 Atomic orbital electron populations 1.23455 0.91930 1.07289 1.05691 1.86970 1.10058 1.11804 1.98010 1.23173 0.99781 0.92980 1.01810 0.90248 1.21834 1.01573 0.95164 0.95852 1.21521 0.95483 0.95949 1.02480 1.21937 0.96826 1.01106 0.96795 1.21230 0.98075 0.91392 0.84958 0.88887 1.45924 1.30179 1.23994 1.33681 1.19913 0.84358 0.82473 0.83452 1.90743 1.24751 1.64398 1.61377 1.20487 0.85499 0.81952 0.84624 1.90707 1.22801 1.65010 1.65101 1.45955 1.29873 1.28550 1.28129 1.20896 0.94671 0.95042 0.83968 1.19083 0.97383 0.86269 0.97329 1.20746 0.92600 1.50629 0.90742 0.92503 1.25656 0.97647 0.94337 0.99795 1.70116 1.20563 1.49711 1.13721 0.85665 0.80373 0.77437 0.79129 1.19163 1.20545 1.21162 1.22476 0.95403 1.01674 0.99391 1.22978 1.01059 1.04513 0.92948 1.21605 0.93256 0.93990 1.04965 0.89229 0.87223 0.90342 0.91092 0.89533 0.93134 0.90144 0.88304 0.92564 0.74933 0.74853 0.93411 0.93863 0.93007 0.90684 0.91608 0.89565 0.89146 0.87488 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.45 113.37 1.18 -0.04 16 2 S -0.30 -4.54 21.79 -56.49 -1.23 -5.78 16 3 C -0.05 -0.66 2.48 30.59 0.08 -0.59 16 4 H 0.08 1.22 6.51 -2.39 -0.02 1.20 16 5 C -0.11 -1.15 5.11 30.59 0.16 -1.00 16 6 C -0.11 -1.50 5.77 30.60 0.18 -1.32 16 7 C -0.13 -1.88 5.60 30.60 0.17 -1.70 16 8 C 0.15 2.53 2.78 44.97 0.13 2.65 16 9 H 0.09 1.78 7.58 -2.38 -0.02 1.76 16 10 N -0.68 -15.34 4.22 -443.94 -1.88 -17.22 16 11 C 0.52 15.51 7.85 87.27 0.69 16.19 16 12 O -0.54 -17.70 16.15 -3.24 -0.05 -17.75 16 13 C 0.49 17.76 7.88 87.27 0.69 18.45 16 14 O -0.56 -22.13 16.47 -3.25 -0.05 -22.18 16 15 N -0.67 -25.95 5.40 -464.40 -2.51 -28.46 16 16 C 0.18 7.99 5.71 86.38 0.49 8.48 16 17 C 0.00 0.01 1.46 -52.93 -0.08 -0.07 16 18 C -0.51 -26.67 8.77 25.60 0.22 -26.44 16 19 H 0.06 2.97 7.82 -2.91 -0.02 2.94 16 20 C 0.03 1.42 5.40 84.65 0.46 1.88 16 21 N -0.90 -50.45 12.91 21.45 0.28 -50.18 16 22 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 26 C -0.15 -6.75 9.38 30.59 0.29 -6.47 16 27 C -0.18 -7.04 9.50 30.60 0.29 -6.75 16 28 C -0.10 -1.35 4.89 30.57 0.15 -1.20 16 29 H 0.09 0.75 7.14 -2.39 -0.02 0.73 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.71 6.92 -2.39 -0.02 0.70 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.83 7.60 -2.38 -0.02 0.81 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.41 8.87 6.35 -92.71 -0.59 8.28 16 39 H 0.41 15.25 7.70 -92.70 -0.71 14.54 16 40 H 0.05 2.15 7.83 -2.39 -0.02 2.13 16 41 H 0.04 2.23 8.04 -2.39 -0.02 2.21 16 42 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 43 H 0.07 3.16 8.03 -2.39 -0.02 3.14 16 44 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -61.87 400.23 1.34 -60.53 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.33 Total: 34.31 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 5.09 Total: 2.07 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -4.10 Total: -95.85 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.11 Total: -39.93 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -1.23 Total: -5.78 kcal Total: -61.87 1.34 -60.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117446466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.640 kcal (2) G-P(sol) polarization free energy of solvation -61.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds