Wall clock time and date at job start Tue Mar 31 2020 23:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47271 * 339.67961 * 3 2 1 5 5 C 1.46849 * 110.99942 * 294.21443 * 4 3 2 6 6 C 1.53039 * 109.51933 * 174.15807 * 5 4 3 7 7 C 1.53120 * 109.28013 * 59.17965 * 6 5 4 8 8 C 1.52995 * 109.57963 * 182.40741 * 7 6 5 9 9 C 1.53011 * 109.46818 * 295.94068 * 8 7 6 10 10 O 1.42898 * 109.46691 * 176.83251 * 9 8 7 11 11 C 1.42905 * 113.99615 * 180.02562 * 10 9 8 12 12 N 1.46506 * 109.52336 * 62.24766 * 7 6 5 13 13 C 1.34774 * 119.99855 * 177.06943 * 12 7 6 14 14 O 1.21279 * 120.00100 * 4.49863 * 13 12 7 15 15 C 1.50701 * 119.99964 * 184.49669 * 13 12 7 16 16 S 1.80994 * 109.47289 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00111 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00402 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00262 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99818 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48489 * 109.47378 * 59.99774 * 21 19 17 23 23 H 1.48504 * 109.47233 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47043 * 299.99517 * 21 19 17 25 25 C 1.53117 * 109.16005 * 302.34263 * 7 6 5 26 26 C 1.46849 * 111.00255 * 170.00070 * 4 3 2 27 27 H 4.40888 * 5.52139 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46988 * 99.68225 * 3 2 1 29 29 H 1.09003 * 109.46793 * 219.68640 * 3 2 1 30 30 H 1.09001 * 109.45891 * 294.17022 * 5 4 3 31 31 H 1.08999 * 109.46714 * 54.14407 * 5 4 3 32 32 H 1.09001 * 109.50721 * 299.23519 * 6 5 4 33 33 H 1.09000 * 109.50377 * 179.11674 * 6 5 4 34 34 H 1.09001 * 109.47082 * 55.93104 * 8 7 6 35 35 H 1.09000 * 109.47815 * 175.93907 * 8 7 6 36 36 H 1.09001 * 109.46854 * 296.82986 * 9 8 7 37 37 H 1.08996 * 109.47202 * 56.82674 * 9 8 7 38 38 H 1.09001 * 109.47219 * 299.99437 * 11 10 9 39 39 H 1.08996 * 109.47695 * 59.99586 * 11 10 9 40 40 H 1.09002 * 109.47263 * 179.97438 * 11 10 9 41 41 H 0.96999 * 119.99681 * 357.06372 * 12 7 6 42 42 H 1.08999 * 109.46966 * 300.00375 * 15 13 12 43 43 H 1.09002 * 109.46678 * 59.99998 * 15 13 12 44 44 H 0.97000 * 120.00185 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.50307 * 297.71225 * 25 7 6 46 46 H 1.09001 * 109.53603 * 177.61413 * 25 7 6 47 47 H 1.09004 * 109.46097 * 305.86219 * 26 4 3 48 48 H 1.08996 * 109.45826 * 65.82436 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.2979 0.4810 5 6 2.7816 -1.5049 1.8909 6 6 3.1780 -2.9209 2.3152 7 6 4.6849 -3.1052 2.1162 8 6 5.0790 -4.5376 2.4817 9 6 4.8161 -4.7748 3.9703 10 8 5.1144 -6.1338 4.2960 11 6 4.9010 -6.4623 5.6703 12 7 5.4107 -2.1640 2.9729 13 6 6.7578 -2.1861 3.0083 14 8 7.3717 -2.9282 2.2713 15 6 7.5012 -1.2885 3.9638 16 16 9.2823 -1.5487 3.7740 17 6 9.8875 -0.4089 4.9736 18 1 9.1952 0.1839 5.5529 19 6 11.2542 -0.2721 5.1734 20 7 12.0982 -0.9943 4.4671 21 14 11.8959 0.9357 6.4457 22 1 11.3725 0.5678 7.7857 23 1 13.3802 0.8929 6.4646 24 1 11.4453 2.3073 6.0977 25 6 5.0347 -2.8367 0.6499 26 6 4.5847 -1.4232 0.2738 27 1 -1.0498 -0.0003 0.0003 28 1 3.0092 0.1737 -1.0130 29 1 3.0089 0.7917 0.6563 30 1 3.3106 -0.7792 2.5087 31 1 1.7069 -1.3751 2.0180 32 1 2.6390 -3.6474 1.7071 33 1 2.9289 -3.0690 3.3660 34 1 4.4880 -5.2386 1.8923 35 1 6.1378 -4.6883 2.2713 36 1 5.4487 -4.1122 4.5610 37 1 3.7687 -4.5695 4.1915 38 1 5.5351 -5.8349 6.2967 39 1 3.8552 -6.2923 5.9264 40 1 5.1494 -7.5106 5.8361 41 1 4.9216 -1.5251 3.5146 42 1 7.2604 -0.2479 3.7466 43 1 7.2070 -1.5237 4.9866 44 1 13.0533 -0.8985 4.6065 45 1 4.5250 -3.5618 0.0155 46 1 6.1122 -2.9248 0.5102 47 1 4.8194 -1.2339 -0.7738 48 1 5.1050 -0.6978 0.8991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150970488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:30 Heat of formation + Delta-G solvation = -22.552393 kcal Electronic energy + Delta-G solvation = -28092.140849 eV Core-core repulsion = 24275.120422 eV Total energy + Delta-G solvation = -3817.020427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.76884 -38.36115 -37.80385 -35.84362 -33.28860 -32.44735 -32.20987 -31.11988 -30.31362 -28.84492 -27.07552 -25.90361 -25.48961 -23.97460 -23.24923 -21.41402 -20.81247 -19.02429 -18.40506 -17.92254 -16.83923 -16.51015 -16.08101 -16.04507 -15.47809 -15.43559 -15.00382 -14.87272 -14.82308 -14.61965 -14.07057 -13.84119 -13.77733 -13.32550 -13.14895 -13.09396 -12.88552 -12.61428 -12.27154 -12.03759 -11.86522 -11.77147 -11.37391 -11.26880 -11.15597 -11.06183 -11.05715 -10.92079 -10.78330 -10.56423 -10.46464 -10.38024 -9.83835 -9.64407 -9.15436 -9.07969 -8.92492 -8.55643 -8.25481 -6.51158 -6.23252 -3.93666 2.43581 2.59171 3.00357 3.07610 3.21526 3.25850 3.28979 3.64896 3.73601 3.79275 4.12846 4.18866 4.45784 4.57751 4.80087 4.97289 4.99688 5.08012 5.10606 5.11820 5.13823 5.19876 5.25715 5.29918 5.31840 5.37899 5.40739 5.44523 5.60283 5.61454 5.64873 5.67330 5.75808 5.79304 5.84944 5.89798 5.96851 5.98855 6.10488 6.25566 6.36089 6.69120 6.74603 6.82733 7.16469 7.36066 7.57267 7.71763 8.32999 8.61961 9.21982 10.84011 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009806 B = 0.003168 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.707941 B = 8835.658422 C =10741.996546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.160 3.840 4 N -0.534 5.534 5 C 0.055 3.945 6 C -0.119 4.119 7 C 0.187 3.813 8 C -0.130 4.130 9 C 0.067 3.933 10 O -0.391 6.391 11 C 0.032 3.968 12 N -0.734 5.734 13 C 0.535 3.465 14 O -0.507 6.507 15 C -0.155 4.155 16 S -0.055 6.055 17 C -0.537 4.537 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.274 1.274 25 C -0.124 4.124 26 C 0.059 3.941 27 H 0.216 0.784 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.084 0.916 41 H 0.394 0.606 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.269 0.731 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.078 0.922 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.290 -2.098 -4.303 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.176 4.176 3 C 0.033 3.967 4 N -0.259 5.259 5 C -0.073 4.073 6 C -0.158 4.158 7 C 0.101 3.899 8 C -0.168 4.168 9 C -0.010 4.010 10 O -0.310 6.310 11 C -0.064 4.064 12 N -0.389 5.389 13 C 0.321 3.679 14 O -0.381 6.381 15 C -0.306 4.306 16 S 0.171 5.829 17 C -0.685 4.685 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.163 4.163 26 C -0.068 4.068 27 H 0.233 0.767 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.096 0.904 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.188 -3.900 -5.976 23.308 hybrid contribution -0.503 2.840 2.765 3.996 sum -22.691 -1.060 -3.211 22.942 Atomic orbital electron populations 1.24867 0.95868 1.00155 1.01265 1.22871 0.94182 1.00370 1.00131 1.19007 0.85065 0.90914 1.01710 1.61953 1.14860 1.29987 1.19099 1.22108 1.00835 0.96503 0.87833 1.21954 0.94405 0.97477 1.01915 1.20212 0.90615 0.88417 0.90654 1.21901 1.05494 0.94974 0.94451 1.22516 0.98512 0.83071 0.96882 1.87872 1.88788 1.28195 1.26102 1.22714 0.99374 1.01390 0.82953 1.46240 1.06510 1.38731 1.47451 1.20214 0.81404 0.82996 0.83260 1.90646 1.67176 1.39650 1.40649 1.23553 1.05165 1.01228 1.00634 1.85385 0.89832 1.55151 1.52510 1.22823 0.94498 1.26590 1.24632 0.91107 1.24980 0.95753 0.96274 0.96512 1.70002 1.02916 1.38454 1.38849 0.86244 0.77754 0.80697 0.80924 1.19970 1.20782 1.19967 1.21999 1.03773 0.96092 0.94439 1.22077 0.85561 0.97780 1.01358 0.76714 0.88352 0.92356 0.94589 0.90496 0.89356 0.90720 0.90582 0.88258 0.93200 0.93848 0.93923 0.94480 0.89767 0.77142 0.89588 0.89538 0.92112 0.90476 0.88443 0.90390 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 19.25 29.55 0.57 -1.09 16 2 C -0.18 -1.64 12.34 -37.12 -0.46 -2.10 16 3 C 0.16 1.39 5.46 -6.61 -0.04 1.36 16 4 N -0.53 -5.10 4.63 -238.18 -1.10 -6.21 16 5 C 0.06 0.48 5.14 -3.83 -0.02 0.46 16 6 C -0.12 -1.04 4.62 -26.65 -0.12 -1.16 16 7 C 0.19 2.08 0.35 -131.70 -0.05 2.03 16 8 C -0.13 -1.66 4.31 -26.73 -0.12 -1.78 16 9 C 0.07 0.84 5.49 37.16 0.20 1.04 16 10 O -0.39 -5.50 10.70 -35.23 -0.38 -5.88 16 11 C 0.03 0.35 11.01 101.05 1.11 1.46 16 12 N -0.73 -8.97 3.39 -47.49 -0.16 -9.14 16 13 C 0.53 9.17 6.94 -10.99 -0.08 9.09 16 14 O -0.51 -10.42 12.13 5.56 0.07 -10.35 16 15 C -0.16 -3.01 6.16 36.01 0.22 -2.78 16 16 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 17 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 18 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 21 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C -0.12 -1.46 4.75 -26.65 -0.13 -1.59 16 26 C 0.06 0.63 5.31 -3.83 -0.02 0.61 16 27 H 0.22 1.03 7.80 -54.10 -0.42 0.61 16 28 H 0.10 0.77 7.99 -51.93 -0.41 0.35 16 29 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.04 0.31 6.95 -51.93 -0.36 -0.05 16 31 H 0.08 0.66 7.11 -51.93 -0.37 0.29 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.57 6.60 -51.93 -0.34 0.23 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.63 6.23 -51.93 -0.32 1.31 16 36 H 0.05 0.69 7.34 -51.93 -0.38 0.31 16 37 H 0.04 0.45 6.45 -51.93 -0.33 0.11 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.39 3.95 7.38 -40.82 -0.30 3.65 16 42 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 43 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 1.43 6.22 -51.93 -0.32 1.11 16 47 H 0.08 0.77 8.02 -51.93 -0.42 0.35 16 48 H 0.04 0.48 7.69 -51.93 -0.40 0.08 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -33.74 396.80 -8.55 -42.29 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.74 Total: 3.24 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 1.28 Total: -7.27 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.53 Total: -40.57 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.31 Total: -16.23 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.74 -8.55 -42.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150970488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.736 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds