Wall clock time and date at job start Tue Mar 31 2020 23:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47271 * 339.67961 * 3 2 1 5 5 C 1.46849 * 110.99942 * 294.21443 * 4 3 2 6 6 C 1.53039 * 109.51933 * 174.15807 * 5 4 3 7 7 C 1.53120 * 109.28013 * 59.17965 * 6 5 4 8 8 C 1.52995 * 109.57963 * 182.40741 * 7 6 5 9 9 C 1.53011 * 109.46818 * 295.94068 * 8 7 6 10 10 O 1.42898 * 109.46691 * 176.83251 * 9 8 7 11 11 C 1.42905 * 113.99615 * 180.02562 * 10 9 8 12 12 N 1.46506 * 109.52336 * 62.24766 * 7 6 5 13 13 C 1.34774 * 119.99855 * 177.06943 * 12 7 6 14 14 O 1.21279 * 120.00100 * 4.49863 * 13 12 7 15 15 C 1.50701 * 119.99964 * 184.49669 * 13 12 7 16 16 S 1.80994 * 109.47289 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00111 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00402 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00262 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99818 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48489 * 109.47378 * 59.99774 * 21 19 17 23 23 H 1.48504 * 109.47233 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47043 * 299.99517 * 21 19 17 25 25 C 1.53117 * 109.16005 * 302.34263 * 7 6 5 26 26 C 1.46849 * 111.00255 * 170.00070 * 4 3 2 27 27 H 4.40888 * 5.52139 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46988 * 99.68225 * 3 2 1 29 29 H 1.09003 * 109.46793 * 219.68640 * 3 2 1 30 30 H 1.09001 * 109.45891 * 294.17022 * 5 4 3 31 31 H 1.08999 * 109.46714 * 54.14407 * 5 4 3 32 32 H 1.09001 * 109.50721 * 299.23519 * 6 5 4 33 33 H 1.09000 * 109.50377 * 179.11674 * 6 5 4 34 34 H 1.09001 * 109.47082 * 55.93104 * 8 7 6 35 35 H 1.09000 * 109.47815 * 175.93907 * 8 7 6 36 36 H 1.09001 * 109.46854 * 296.82986 * 9 8 7 37 37 H 1.08996 * 109.47202 * 56.82674 * 9 8 7 38 38 H 1.09001 * 109.47219 * 299.99437 * 11 10 9 39 39 H 1.08996 * 109.47695 * 59.99586 * 11 10 9 40 40 H 1.09002 * 109.47263 * 179.97438 * 11 10 9 41 41 H 0.96999 * 119.99681 * 357.06372 * 12 7 6 42 42 H 1.08999 * 109.46966 * 300.00375 * 15 13 12 43 43 H 1.09002 * 109.46678 * 59.99998 * 15 13 12 44 44 H 0.97000 * 120.00185 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.50307 * 297.71225 * 25 7 6 46 46 H 1.09001 * 109.53603 * 177.61413 * 25 7 6 47 47 H 1.09004 * 109.46097 * 305.86219 * 26 4 3 48 48 H 1.08996 * 109.45826 * 65.82436 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.2979 0.4810 5 6 2.7816 -1.5049 1.8909 6 6 3.1780 -2.9209 2.3152 7 6 4.6849 -3.1052 2.1162 8 6 5.0790 -4.5376 2.4817 9 6 4.8161 -4.7748 3.9703 10 8 5.1144 -6.1338 4.2960 11 6 4.9010 -6.4623 5.6703 12 7 5.4107 -2.1640 2.9729 13 6 6.7578 -2.1861 3.0083 14 8 7.3717 -2.9282 2.2713 15 6 7.5012 -1.2885 3.9638 16 16 9.2823 -1.5487 3.7740 17 6 9.8875 -0.4089 4.9736 18 1 9.1952 0.1839 5.5529 19 6 11.2542 -0.2721 5.1734 20 7 12.0982 -0.9943 4.4671 21 14 11.8959 0.9357 6.4457 22 1 11.3725 0.5678 7.7857 23 1 13.3802 0.8929 6.4646 24 1 11.4453 2.3073 6.0977 25 6 5.0347 -2.8367 0.6499 26 6 4.5847 -1.4232 0.2738 27 1 -1.0498 -0.0003 0.0003 28 1 3.0092 0.1737 -1.0130 29 1 3.0089 0.7917 0.6563 30 1 3.3106 -0.7792 2.5087 31 1 1.7069 -1.3751 2.0180 32 1 2.6390 -3.6474 1.7071 33 1 2.9289 -3.0690 3.3660 34 1 4.4880 -5.2386 1.8923 35 1 6.1378 -4.6883 2.2713 36 1 5.4487 -4.1122 4.5610 37 1 3.7687 -4.5695 4.1915 38 1 5.5351 -5.8349 6.2967 39 1 3.8552 -6.2923 5.9264 40 1 5.1494 -7.5106 5.8361 41 1 4.9216 -1.5251 3.5146 42 1 7.2604 -0.2479 3.7466 43 1 7.2070 -1.5237 4.9866 44 1 13.0533 -0.8985 4.6065 45 1 4.5250 -3.5618 0.0155 46 1 6.1122 -2.9248 0.5102 47 1 4.8194 -1.2339 -0.7738 48 1 5.1050 -0.6978 0.8991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150970488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:29 Heat of formation + Delta-G solvation = -45.969887 kcal Electronic energy + Delta-G solvation = -28093.156308 eV Core-core repulsion = 24275.120422 eV Total energy + Delta-G solvation = -3818.035886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83074 -39.45444 -38.80688 -36.82204 -34.59083 -34.09484 -33.36619 -31.93545 -31.18047 -30.27566 -27.94557 -27.62874 -26.72309 -24.83157 -24.10951 -22.52451 -21.85758 -20.11742 -19.85682 -18.99534 -18.01300 -17.61854 -17.16145 -17.03615 -16.88455 -16.42961 -16.30902 -16.12510 -15.98889 -15.73209 -15.37623 -14.92659 -14.76345 -14.51752 -14.39959 -14.14327 -13.91961 -13.72934 -13.49598 -13.17810 -13.06055 -12.88444 -12.81350 -12.62408 -12.58191 -12.26298 -12.19676 -12.10270 -11.75629 -11.72546 -11.48069 -11.24560 -11.13638 -11.05135 -10.66098 -10.47039 -10.26463 -10.05878 -9.33576 -8.65244 -8.35025 -6.12187 1.26667 1.42143 1.46095 1.55785 1.68195 1.78985 1.96733 2.25016 2.30403 2.79813 2.98873 3.06340 3.32068 3.52544 3.61348 3.73325 3.94288 3.97286 4.15783 4.19379 4.23073 4.28999 4.36300 4.40073 4.43757 4.48772 4.50067 4.51265 4.54361 4.57437 4.61191 4.81018 4.84406 4.90147 4.95395 4.96538 5.01017 5.13529 5.18295 5.25266 5.28450 5.40520 5.62996 5.99256 6.05825 6.18663 6.23851 6.57231 6.75196 7.06237 7.32056 8.73715 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009806 B = 0.003168 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.707941 B = 8835.658422 C =10741.996546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.211 4.211 3 C 0.159 3.841 4 N -0.536 5.536 5 C 0.055 3.945 6 C -0.109 4.109 7 C 0.191 3.809 8 C -0.126 4.126 9 C 0.069 3.931 10 O -0.420 6.420 11 C 0.026 3.974 12 N -0.709 5.709 13 C 0.539 3.461 14 O -0.545 6.545 15 C -0.132 4.132 16 S -0.143 6.143 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.996 3.004 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.122 4.122 26 C 0.067 3.933 27 H 0.244 0.756 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.410 0.590 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.271 0.729 45 H 0.085 0.915 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.539 -0.909 -2.988 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.211 4.211 3 C 0.033 3.967 4 N -0.261 5.261 5 C -0.072 4.072 6 C -0.147 4.147 7 C 0.106 3.894 8 C -0.165 4.165 9 C -0.007 4.007 10 O -0.339 6.339 11 C -0.070 4.070 12 N -0.364 5.364 13 C 0.325 3.675 14 O -0.422 6.422 15 C -0.283 4.283 16 S 0.084 5.916 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.817 3.183 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.161 4.161 26 C -0.061 4.061 27 H 0.260 0.740 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.247 0.753 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -25.497 -2.698 -4.651 26.057 hybrid contribution 0.360 2.411 2.300 3.351 sum -25.137 -0.287 -2.351 25.248 Atomic orbital electron populations 1.25639 0.96704 0.98668 0.99863 1.23142 0.94742 1.01771 1.01491 1.19013 0.85234 0.90435 1.02043 1.61938 1.13629 1.30759 1.19797 1.22150 1.01382 0.96363 0.87349 1.21920 0.91562 0.97840 1.03370 1.20297 0.92245 0.87064 0.89833 1.21834 1.02997 0.96298 0.95337 1.22537 0.99867 0.82358 0.95975 1.87836 1.89297 1.28804 1.27989 1.22901 1.00781 1.01983 0.81309 1.45962 1.04717 1.38678 1.47004 1.19861 0.82827 0.82274 0.82561 1.90661 1.68369 1.41121 1.42077 1.23395 0.99770 1.02868 1.02280 1.85549 0.96764 1.56027 1.53283 1.23167 0.95193 1.26568 1.24631 0.90157 1.26101 0.95992 0.98233 0.98761 1.70173 1.03248 1.40432 1.40852 0.85043 0.77039 0.78169 0.78001 1.18728 1.20401 1.18659 1.21906 1.01656 0.97315 0.95180 1.21940 0.86399 0.96385 1.01354 0.73993 0.87947 0.92052 0.94244 0.89616 0.88564 0.88736 0.89354 0.92528 0.94980 0.90633 0.94547 0.92081 0.88664 0.75298 0.87804 0.87953 0.92016 0.89626 0.91945 0.90043 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 19.25 74.32 1.43 -1.14 16 2 C -0.21 -3.50 12.34 31.12 0.38 -3.12 16 3 C 0.16 2.52 5.46 84.50 0.46 2.99 16 4 N -0.54 -9.25 4.63 -907.45 -4.21 -13.46 16 5 C 0.06 0.80 5.14 86.33 0.44 1.25 16 6 C -0.11 -1.56 4.62 30.65 0.14 -1.41 16 7 C 0.19 4.04 0.35 3.68 0.00 4.04 16 8 C -0.13 -3.20 4.31 30.60 0.13 -3.07 16 9 C 0.07 1.64 5.49 71.99 0.40 2.04 16 10 O -0.42 -11.55 10.70 -148.98 -1.59 -13.14 16 11 C 0.03 0.53 11.01 113.37 1.25 1.77 16 12 N -0.71 -16.60 3.39 -422.56 -1.43 -18.04 16 13 C 0.54 18.73 6.94 87.66 0.61 19.34 16 14 O -0.55 -23.58 12.13 -3.03 -0.04 -23.62 16 15 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 16 S -0.14 -7.87 20.57 -56.49 -1.16 -9.03 16 17 C -0.55 -31.15 9.50 67.95 0.65 -30.51 16 18 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 19 C 0.01 0.80 5.49 84.86 0.47 1.26 16 20 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 21 Si 1.00 43.51 29.55 68.60 2.03 45.53 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 C -0.12 -2.86 4.75 30.65 0.15 -2.71 16 26 C 0.07 1.36 5.31 86.32 0.46 1.82 16 27 H 0.24 1.46 7.80 -4.43 -0.03 1.43 16 28 H 0.10 1.48 7.99 -2.39 -0.02 1.47 16 29 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 30 H 0.04 0.56 6.95 -2.39 -0.02 0.54 16 31 H 0.09 1.17 7.11 -2.39 -0.02 1.16 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.03 6.60 -2.39 -0.02 1.01 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.96 6.23 -2.39 -0.01 1.95 16 36 H 0.03 0.87 7.34 -2.39 -0.02 0.85 16 37 H 0.08 1.30 6.45 -2.39 -0.02 1.29 16 38 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.41 7.22 7.38 -92.71 -0.68 6.53 16 42 H 0.10 3.65 8.14 -2.40 -0.02 3.63 16 43 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 1.95 6.22 -2.39 -0.01 1.93 16 47 H 0.08 1.59 8.02 -2.38 -0.02 1.57 16 48 H 0.03 0.66 7.69 -2.39 -0.02 0.64 16 Total: -1.00 -76.81 396.80 1.55 -75.26 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.27 Total: 24.32 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 7.40 Total: -12.12 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -5.35 Total: -87.19 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.63 Total: -36.76 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -76.81 1.55 -75.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150970488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.288 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds