Wall clock time and date at job start Tue Mar 31 2020 23:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00039 * 2 1 4 4 C 1.47202 * 109.47063 * 179.97438 * 3 2 1 5 5 C 3.40061 * 161.18905 * 0.02562 * 2 1 3 6 6 C 4.78781 * 168.18570 * 0.02562 * 2 1 3 7 7 N 1.46899 * 109.46896 * 269.67412 * 6 5 4 8 8 C 1.46903 * 111.00020 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47352 * 185.24155 * 8 7 6 10 10 C 1.53000 * 115.54852 * 296.02276 * 9 8 7 11 11 C 1.53003 * 109.47006 * 279.48511 * 10 9 8 12 12 N 1.46501 * 109.47414 * 175.39633 * 11 10 9 13 13 C 1.34770 * 120.00310 * 179.97438 * 12 11 10 14 14 O 1.21278 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99989 * 179.72326 * 13 12 11 16 16 S 1.81002 * 109.47335 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00162 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00466 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99928 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99855 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47548 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46833 * 120.00784 * 21 19 17 24 24 H 1.48501 * 109.47121 * 239.99948 * 21 19 17 25 25 C 1.52994 * 117.51824 * 81.72089 * 9 8 7 26 26 C 1.52998 * 117.50016 * 150.35377 * 9 8 7 27 27 H 1.09001 * 109.47275 * 300.00195 * 1 2 3 28 28 H 1.09001 * 109.46957 * 60.00169 * 1 2 3 29 29 H 1.09001 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46699 * 59.99998 * 3 2 1 31 31 H 1.09000 * 109.47020 * 299.99847 * 3 2 1 32 32 H 1.09006 * 109.47085 * 149.67825 * 6 5 4 33 33 H 1.09000 * 109.47357 * 29.67231 * 6 5 4 34 34 H 1.00904 * 111.00200 * 303.95368 * 7 6 5 35 35 H 1.09000 * 109.47037 * 65.23653 * 8 7 6 36 36 H 1.09000 * 109.46994 * 305.24263 * 8 7 6 37 37 H 1.09002 * 109.47314 * 159.48574 * 10 9 8 38 38 H 1.08999 * 109.47218 * 39.48245 * 10 9 8 39 39 H 1.08991 * 109.47437 * 55.39297 * 11 10 9 40 40 H 1.09007 * 109.47010 * 295.39205 * 11 10 9 41 41 H 0.97006 * 119.99558 * 359.97438 * 12 11 10 42 42 H 1.09004 * 109.47307 * 300.00036 * 15 13 12 43 43 H 1.08997 * 109.47449 * 59.99753 * 15 13 12 44 44 H 0.97001 * 120.00065 * 179.97438 * 20 19 17 45 45 H 1.09000 * 117.50302 * 214.96858 * 25 9 8 46 46 H 1.09000 * 117.50006 * 359.97438 * 25 9 8 47 47 H 1.08999 * 117.49940 * 359.97166 * 26 9 8 48 48 H 1.09000 * 117.50431 * 145.00054 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4776 1.1892 0.0006 5 6 4.6480 1.0965 0.0005 6 6 6.1154 0.9803 0.0004 7 7 6.6041 0.9494 1.3854 8 6 8.0681 0.8343 1.4246 9 6 8.5285 0.6739 2.8748 10 6 8.2454 1.8649 3.7926 11 6 9.3135 2.9392 3.5781 12 7 8.9821 4.1233 4.3746 13 6 9.7875 5.2034 4.3435 14 8 10.7864 5.1954 3.6558 15 6 9.4433 6.4237 5.1580 16 16 10.7077 7.6940 4.9055 17 6 10.0720 8.9688 5.9425 18 1 9.1545 8.8122 6.4903 19 6 10.7511 10.1740 6.0564 20 7 11.8696 10.3647 5.3893 21 14 10.0768 11.5257 7.1553 22 1 8.8158 11.0649 7.7899 23 1 11.0715 11.8490 8.2094 24 1 9.8074 12.7377 6.3406 25 6 8.4536 -0.7251 3.4896 26 6 9.8114 -0.1214 3.1250 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8901 31 1 1.6886 1.8464 -0.8900 32 1 6.5476 1.8359 -0.5184 33 1 6.4071 0.0615 -0.5083 34 1 6.2917 1.7610 1.8973 35 1 8.5147 1.7328 0.9988 36 1 8.3798 -0.0354 0.8462 37 1 8.2646 1.5357 4.8315 38 1 7.2635 2.2773 3.5602 39 1 9.3500 3.2097 2.5229 40 1 10.2846 2.5530 3.8881 41 1 8.1829 4.1298 4.9244 42 1 8.4735 6.8091 4.8429 43 1 9.4022 6.1561 6.2138 44 1 12.3440 11.2071 5.4685 45 1 8.2028 -0.7971 4.5479 46 1 8.0759 -1.5315 2.8610 47 1 10.3272 -0.5307 2.2564 48 1 10.4537 0.2038 3.9433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163490663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:10 Heat of formation + Delta-G solvation = -12.757867 kcal Electronic energy + Delta-G solvation = -25114.476527 eV Core-core repulsion = 21297.880822 eV Total energy + Delta-G solvation = -3816.595705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.54964 -38.72702 -38.42709 -36.27271 -34.64347 -33.39126 -32.43310 -30.85936 -29.52183 -28.51638 -27.27380 -25.85018 -25.49496 -24.07651 -23.62144 -22.34486 -20.47577 -19.24197 -17.91329 -17.73386 -16.98000 -16.55358 -16.43696 -16.34831 -15.98478 -15.66748 -15.43507 -15.17332 -14.90834 -14.80914 -14.38127 -13.92281 -13.71452 -13.55104 -13.38980 -13.19264 -13.06413 -12.66186 -12.56626 -12.25038 -12.16984 -12.05072 -11.74175 -11.57450 -11.22739 -11.07379 -11.02236 -10.82647 -10.76627 -10.55223 -10.39731 -10.11413 -9.94807 -9.80212 -9.38224 -9.08218 -8.90384 -8.80401 -8.23256 -6.50237 -6.22221 -3.92600 2.04465 2.18273 3.03062 3.11193 3.21068 3.27397 3.31380 3.36765 3.47151 3.73248 3.91543 4.13462 4.19999 4.38863 4.43352 4.66330 4.66936 4.71930 4.79096 4.85722 4.94400 4.97865 5.01225 5.06805 5.12714 5.13435 5.17469 5.20123 5.27507 5.33027 5.37948 5.43171 5.47520 5.64701 5.69761 5.81595 5.88536 5.92337 5.96445 6.00828 6.14038 6.48456 6.56677 6.63558 6.89387 7.20701 7.59505 7.72045 8.35040 8.62680 9.23268 10.85293 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.001730 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.645950 B =16176.415319 C =18366.957438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.178 3.822 4 C -0.182 4.182 5 C -0.145 4.145 6 C 0.169 3.831 7 N -0.682 5.682 8 C 0.095 3.905 9 C -0.119 4.119 10 C -0.093 4.093 11 C 0.124 3.876 12 N -0.741 5.741 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.157 4.157 26 C -0.171 4.171 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.346 0.654 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.233 -23.853 -9.021 31.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.103 3.897 4 C -0.183 4.183 5 C -0.146 4.146 6 C 0.042 3.958 7 N -0.314 5.314 8 C -0.034 4.034 9 C -0.121 4.121 10 C -0.131 4.131 11 C 0.000 4.000 12 N -0.395 5.395 13 C 0.317 3.683 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.194 4.194 26 C -0.208 4.208 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.165 0.835 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.382 -24.586 -10.155 31.241 hybrid contribution -1.964 2.014 1.493 3.185 sum -18.346 -22.572 -8.663 30.350 Atomic orbital electron populations 1.22801 0.80142 1.03278 1.00342 1.87975 1.20188 1.26958 1.95528 1.19066 0.83687 0.85415 1.01540 1.21644 0.92818 1.03772 1.00101 1.22126 0.93391 0.97319 1.01726 1.18861 0.83974 1.02152 0.90857 1.60424 1.10773 1.48045 1.12188 1.21468 0.86549 1.01184 0.94183 1.21202 1.02583 0.92939 0.95327 1.21299 0.98801 0.93722 0.99239 1.21243 0.98223 0.84618 0.95955 1.46028 1.28482 1.15366 1.49639 1.20304 0.82783 0.83481 0.81768 1.90700 1.26026 1.81870 1.40628 1.23532 1.06632 0.98276 1.01975 1.85397 1.28685 1.07320 1.62045 1.22916 1.12522 1.01156 1.31766 0.90877 1.24994 0.94700 0.97905 0.95989 1.70028 1.15223 1.25255 1.39770 0.86116 0.78872 0.80719 0.79780 1.19625 1.20556 1.20569 1.22972 0.99783 0.95357 1.01261 1.23061 0.90677 1.03422 1.03676 0.93606 0.93703 0.89204 0.90613 0.90811 0.92355 0.88310 0.83481 0.93937 0.90426 0.90872 0.90925 0.91891 0.91558 0.76906 0.89272 0.89252 0.92237 0.88897 0.88609 0.88653 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.41 10.66 -35.23 -0.38 -3.78 16 3 C 0.18 1.31 6.41 34.37 0.22 1.53 16 4 C -0.18 -1.81 13.73 -37.12 -0.51 -2.32 16 5 C -0.14 -1.41 13.60 -37.12 -0.50 -1.92 16 6 C 0.17 1.29 6.16 -6.61 -0.04 1.25 16 7 N -0.68 -5.41 6.44 -116.88 -0.75 -6.16 16 8 C 0.09 0.70 5.55 -3.82 -0.02 0.68 16 9 C -0.12 -0.91 1.73 -154.51 -0.27 -1.18 16 10 C -0.09 -0.75 5.24 -26.73 -0.14 -0.89 16 11 C 0.12 1.41 5.51 -4.04 -0.02 1.39 16 12 N -0.74 -9.76 5.56 -60.30 -0.33 -10.10 16 13 C 0.53 9.94 7.85 -10.99 -0.09 9.85 16 14 O -0.52 -11.87 15.86 5.56 0.09 -11.78 16 15 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.16 -1.14 9.90 -26.73 -0.26 -1.41 16 26 C -0.17 -1.27 9.58 -26.73 -0.26 -1.53 16 27 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.35 2.76 7.34 -39.29 -0.29 2.48 16 35 H 0.04 0.33 7.69 -51.93 -0.40 -0.07 16 36 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 38 H 0.07 0.55 6.73 -51.93 -0.35 0.20 16 39 H 0.06 0.78 7.69 -51.93 -0.40 0.39 16 40 H 0.07 0.83 7.82 -51.92 -0.41 0.43 16 41 H 0.40 4.04 8.47 -40.82 -0.35 3.70 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.10 0.77 7.99 -51.93 -0.41 0.35 16 LS Contribution 424.12 15.07 6.39 6.39 Total: -1.00 -36.17 424.12 -9.90 -46.07 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.05 Total: 1.48 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.36 Total: -9.17 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.35 Total: -41.73 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.29 Total: -15.56 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -36.17 -9.90 -46.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163490663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.313 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds