Wall clock time and date at job start Tue Mar 31 2020 23:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00039 * 2 1 4 4 C 1.47202 * 109.47063 * 179.97438 * 3 2 1 5 5 C 3.40061 * 161.18905 * 0.02562 * 2 1 3 6 6 C 4.78781 * 168.18570 * 0.02562 * 2 1 3 7 7 N 1.46899 * 109.46896 * 269.67412 * 6 5 4 8 8 C 1.46903 * 111.00020 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47352 * 185.24155 * 8 7 6 10 10 C 1.53000 * 115.54852 * 296.02276 * 9 8 7 11 11 C 1.53003 * 109.47006 * 279.48511 * 10 9 8 12 12 N 1.46501 * 109.47414 * 175.39633 * 11 10 9 13 13 C 1.34770 * 120.00310 * 179.97438 * 12 11 10 14 14 O 1.21278 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99989 * 179.72326 * 13 12 11 16 16 S 1.81002 * 109.47335 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00162 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00466 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99928 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99855 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47548 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46833 * 120.00784 * 21 19 17 24 24 H 1.48501 * 109.47121 * 239.99948 * 21 19 17 25 25 C 1.52994 * 117.51824 * 81.72089 * 9 8 7 26 26 C 1.52998 * 117.50016 * 150.35377 * 9 8 7 27 27 H 1.09001 * 109.47275 * 300.00195 * 1 2 3 28 28 H 1.09001 * 109.46957 * 60.00169 * 1 2 3 29 29 H 1.09001 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46699 * 59.99998 * 3 2 1 31 31 H 1.09000 * 109.47020 * 299.99847 * 3 2 1 32 32 H 1.09006 * 109.47085 * 149.67825 * 6 5 4 33 33 H 1.09000 * 109.47357 * 29.67231 * 6 5 4 34 34 H 1.00904 * 111.00200 * 303.95368 * 7 6 5 35 35 H 1.09000 * 109.47037 * 65.23653 * 8 7 6 36 36 H 1.09000 * 109.46994 * 305.24263 * 8 7 6 37 37 H 1.09002 * 109.47314 * 159.48574 * 10 9 8 38 38 H 1.08999 * 109.47218 * 39.48245 * 10 9 8 39 39 H 1.08991 * 109.47437 * 55.39297 * 11 10 9 40 40 H 1.09007 * 109.47010 * 295.39205 * 11 10 9 41 41 H 0.97006 * 119.99558 * 359.97438 * 12 11 10 42 42 H 1.09004 * 109.47307 * 300.00036 * 15 13 12 43 43 H 1.08997 * 109.47449 * 59.99753 * 15 13 12 44 44 H 0.97001 * 120.00065 * 179.97438 * 20 19 17 45 45 H 1.09000 * 117.50302 * 214.96858 * 25 9 8 46 46 H 1.09000 * 117.50006 * 359.97438 * 25 9 8 47 47 H 1.08999 * 117.49940 * 359.97166 * 26 9 8 48 48 H 1.09000 * 117.50431 * 145.00054 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4776 1.1892 0.0006 5 6 4.6480 1.0965 0.0005 6 6 6.1154 0.9803 0.0004 7 7 6.6041 0.9494 1.3854 8 6 8.0681 0.8343 1.4246 9 6 8.5285 0.6739 2.8748 10 6 8.2454 1.8649 3.7926 11 6 9.3135 2.9392 3.5781 12 7 8.9821 4.1233 4.3746 13 6 9.7875 5.2034 4.3435 14 8 10.7864 5.1954 3.6558 15 6 9.4433 6.4237 5.1580 16 16 10.7077 7.6940 4.9055 17 6 10.0720 8.9688 5.9425 18 1 9.1545 8.8122 6.4903 19 6 10.7511 10.1740 6.0564 20 7 11.8696 10.3647 5.3893 21 14 10.0768 11.5257 7.1553 22 1 8.8158 11.0649 7.7899 23 1 11.0715 11.8490 8.2094 24 1 9.8074 12.7377 6.3406 25 6 8.4536 -0.7251 3.4896 26 6 9.8114 -0.1214 3.1250 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8901 31 1 1.6886 1.8464 -0.8900 32 1 6.5476 1.8359 -0.5184 33 1 6.4071 0.0615 -0.5083 34 1 6.2917 1.7610 1.8973 35 1 8.5147 1.7328 0.9988 36 1 8.3798 -0.0354 0.8462 37 1 8.2646 1.5357 4.8315 38 1 7.2635 2.2773 3.5602 39 1 9.3500 3.2097 2.5229 40 1 10.2846 2.5530 3.8881 41 1 8.1829 4.1298 4.9244 42 1 8.4735 6.8091 4.8429 43 1 9.4022 6.1561 6.2138 44 1 12.3440 11.2071 5.4685 45 1 8.2028 -0.7971 4.5479 46 1 8.0759 -1.5315 2.8610 47 1 10.3272 -0.5307 2.2564 48 1 10.4537 0.2038 3.9433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163490663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:09 Heat of formation + Delta-G solvation = -38.426142 kcal Electronic energy + Delta-G solvation = -25115.589587 eV Core-core repulsion = 21297.880822 eV Total energy + Delta-G solvation = -3817.708765 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.71288 -39.66471 -38.94785 -36.91684 -35.84751 -34.58861 -34.02356 -32.08739 -30.19480 -29.67776 -27.81739 -27.64748 -26.35120 -24.66511 -24.52215 -22.99387 -21.82809 -20.13264 -19.63446 -18.45667 -17.75420 -17.49038 -17.23328 -17.16434 -16.90802 -16.88305 -16.64877 -16.41709 -15.86027 -15.77525 -15.56615 -15.21781 -14.74370 -14.59757 -14.34788 -14.11405 -13.81556 -13.68252 -13.52619 -13.25860 -13.16421 -13.07586 -12.91982 -12.61714 -12.54488 -12.47155 -12.25493 -11.95903 -11.71328 -11.42231 -11.21601 -11.16220 -11.05096 -10.93020 -10.67211 -10.50455 -10.27550 -10.11526 -9.43319 -8.67191 -8.35202 -6.13288 1.27066 1.39103 1.41227 1.47175 1.49798 1.58328 1.61282 2.25417 2.29639 2.76997 2.91471 2.99127 3.31870 3.34930 3.55873 3.76596 3.80451 3.95829 3.99569 4.12776 4.22846 4.27760 4.33577 4.35817 4.38425 4.44278 4.46974 4.50751 4.53736 4.59313 4.61725 4.67567 4.73470 4.79091 4.87544 4.89599 5.07032 5.10787 5.16437 5.30285 5.35511 5.41839 5.45854 5.89604 6.12087 6.19712 6.29284 6.51342 6.52317 7.06287 7.24965 8.74325 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.001730 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.645950 B =16176.415319 C =18366.957438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.173 3.827 4 C -0.203 4.203 5 C -0.163 4.163 6 C 0.169 3.831 7 N -0.686 5.686 8 C 0.098 3.902 9 C -0.124 4.124 10 C -0.081 4.081 11 C 0.126 3.874 12 N -0.713 5.713 13 C 0.532 3.468 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.153 6.153 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.149 4.149 26 C -0.174 4.174 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.345 0.655 35 H 0.036 0.964 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.416 0.584 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.271 0.729 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.643 -24.488 -7.982 33.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C 0.098 3.902 4 C -0.204 4.204 5 C -0.164 4.164 6 C 0.042 3.958 7 N -0.317 5.317 8 C -0.031 4.031 9 C -0.126 4.126 10 C -0.119 4.119 11 C 0.002 3.998 12 N -0.367 5.367 13 C 0.317 3.683 14 O -0.446 6.446 15 C -0.281 4.281 16 S 0.074 5.926 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.186 4.186 26 C -0.211 4.211 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.164 0.836 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.253 0.747 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.848 -25.268 -9.102 32.811 hybrid contribution -1.280 2.068 1.129 2.681 sum -20.128 -23.200 -7.973 31.732 Atomic orbital electron populations 1.22997 0.78323 1.04197 1.01565 1.87919 1.22288 1.27859 1.95795 1.19295 0.82424 0.85321 1.03117 1.22444 0.94022 1.03906 1.00058 1.22694 0.94258 0.97401 1.02022 1.18947 0.82997 1.02950 0.90911 1.60434 1.10938 1.48006 1.12364 1.21445 0.86245 1.01239 0.94130 1.21199 1.02970 0.92983 0.95398 1.21214 0.97901 0.92729 1.00021 1.21344 0.99095 0.84401 0.94948 1.45780 1.27833 1.14208 1.48916 1.20080 0.82757 0.84234 0.81185 1.90690 1.28318 1.82779 1.42769 1.23377 1.04509 0.96578 1.03626 1.85582 1.33256 1.10772 1.62961 1.23248 1.12868 1.01544 1.31773 0.89880 1.26129 0.94831 1.00706 0.97458 1.70189 1.16857 1.26170 1.41566 0.84899 0.78606 0.76896 0.77502 1.18008 1.19929 1.19932 1.22983 0.99300 0.94850 1.01506 1.23093 0.90752 1.03479 1.03818 0.92476 0.92357 0.88530 0.89100 0.88981 0.91549 0.87399 0.83622 0.94547 0.89702 0.89853 0.89870 0.92861 0.92592 0.74670 0.87206 0.87198 0.91990 0.88447 0.88417 0.88098 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -7.03 10.66 -148.98 -1.59 -8.62 16 3 C 0.17 2.38 6.41 70.18 0.45 2.83 16 4 C -0.20 -3.93 13.73 31.13 0.43 -3.50 16 5 C -0.16 -3.09 13.60 31.13 0.42 -2.67 16 6 C 0.17 2.42 6.16 84.50 0.52 2.94 16 7 N -0.69 -9.92 6.44 -523.71 -3.37 -13.30 16 8 C 0.10 1.31 5.55 86.30 0.48 1.79 16 9 C -0.12 -1.69 1.73 -52.18 -0.09 -1.78 16 10 C -0.08 -1.14 5.24 30.60 0.16 -0.98 16 11 C 0.13 2.70 5.51 86.38 0.48 3.18 16 12 N -0.71 -17.49 5.56 -463.07 -2.57 -20.06 16 13 C 0.53 19.56 7.85 87.66 0.69 20.25 16 14 O -0.57 -26.45 15.86 -3.02 -0.05 -26.50 16 15 C -0.13 -5.11 6.16 71.23 0.44 -4.67 16 16 S -0.15 -8.51 20.57 -56.49 -1.16 -9.68 16 17 C -0.55 -31.23 9.50 67.96 0.65 -30.59 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.77 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 21 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C -0.15 -1.89 9.90 30.59 0.30 -1.58 16 26 C -0.17 -2.35 9.58 30.59 0.29 -2.06 16 27 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.35 5.00 7.34 -89.69 -0.66 4.34 16 35 H 0.04 0.54 7.69 -2.39 -0.02 0.52 16 36 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 37 H 0.08 1.05 7.94 -2.39 -0.02 1.04 16 38 H 0.08 1.04 6.73 -2.39 -0.02 1.02 16 39 H 0.05 1.29 7.69 -2.39 -0.02 1.27 16 40 H 0.06 1.36 7.82 -2.38 -0.02 1.35 16 41 H 0.42 7.20 8.47 -92.70 -0.79 6.42 16 42 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 43 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 44 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 46 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.09 1.36 7.99 -2.39 -0.02 1.35 16 Total: -1.00 -80.34 424.12 0.02 -80.32 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.48 Total: 22.20 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 6.93 Total: -14.16 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -5.66 Total: -89.12 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.64 Total: -35.12 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.68 kcal Total: -80.34 0.02 -80.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163490663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.895 kcal (2) G-P(sol) polarization free energy of solvation -80.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds