Wall clock time and date at job start Tue Mar 31 2020 23:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99696 * 2 1 4 4 H 1.48497 * 109.46779 * 239.99624 * 3 2 1 5 5 H 1.48508 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47295 * 119.99571 * 3 2 1 7 7 C 1.38806 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00042 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00153 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47297 * 174.36806 * 10 9 7 12 12 C 1.52995 * 115.54802 * 294.94844 * 11 10 9 13 13 C 1.52993 * 109.47484 * 279.32618 * 12 11 10 14 14 N 1.46505 * 109.47506 * 175.45851 * 13 12 11 15 15 C 1.34778 * 119.99879 * 179.97438 * 14 13 12 16 16 O 1.21543 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.47860 * 119.99624 * 179.97438 * 15 14 13 18 18 C 1.40619 * 119.75866 * 0.02562 * 17 15 14 19 19 C 1.35731 * 120.84071 * 180.02562 * 18 17 15 20 20 C 1.40704 * 120.07732 * 0.23025 * 19 18 17 21 21 N 1.33803 * 120.85098 * 180.26686 * 20 19 18 22 22 C 1.31332 * 119.76049 * 179.80318 * 21 20 19 23 23 C 1.39749 * 120.71021 * 359.71433 * 22 21 20 24 24 N 1.31276 * 120.67748 * 0.02562 * 23 22 21 25 25 C 1.33817 * 119.73815 * 359.97438 * 24 23 22 26 26 C 1.38418 * 119.75634 * 180.02562 * 17 15 14 27 27 C 1.52999 * 117.51685 * 80.65216 * 11 10 9 28 28 C 1.53002 * 60.00082 * 107.48048 * 27 11 10 29 29 H 0.97002 * 120.00341 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00144 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47431 * 54.36703 * 10 9 7 32 32 H 1.08997 * 109.46892 * 294.36941 * 10 9 7 33 33 H 1.08997 * 109.46878 * 159.32257 * 12 11 10 34 34 H 1.08999 * 109.47152 * 39.32580 * 12 11 10 35 35 H 1.09001 * 109.47671 * 55.45519 * 13 12 11 36 36 H 1.09005 * 109.47068 * 295.45930 * 13 12 11 37 37 H 0.96995 * 119.99559 * 0.02562 * 14 13 12 38 38 H 1.08011 * 119.58101 * 359.97438 * 18 17 15 39 39 H 1.07993 * 119.96121 * 179.97438 * 19 18 17 40 40 H 1.07995 * 119.64285 * 179.69346 * 22 21 20 41 41 H 1.08003 * 119.66529 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.24810 * 359.97438 * 26 17 15 43 43 H 1.08998 * 117.49605 * 214.97465 * 27 11 10 44 44 H 1.09000 * 117.49984 * 359.97438 * 27 11 10 45 45 H 1.09000 * 117.49452 * 252.51034 * 28 27 11 46 46 H 1.08997 * 117.49891 * 107.48903 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0701 -4.8162 0.1421 12 6 0.3085 -4.8761 1.4677 13 6 1.1965 -5.5142 2.5377 14 7 0.5092 -5.4732 3.8309 15 6 1.1051 -5.9827 4.9272 16 8 2.2129 -6.4758 4.8431 17 6 0.4117 -5.9409 6.2324 18 6 -0.8696 -5.3687 6.3240 19 6 -1.5259 -5.3182 7.5110 20 6 -0.9242 -5.8375 8.6721 21 7 -1.5593 -5.8006 9.8492 22 6 -0.9792 -6.2951 10.9187 23 6 0.2940 -6.8660 10.8406 24 7 0.9353 -6.9187 9.6964 25 6 0.3653 -6.4216 8.5924 26 6 1.0285 -6.4651 7.3552 27 6 0.3325 -5.2743 -1.1177 28 6 1.4401 -6.1447 -0.5206 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.7584 -3.6720 0.8358 32 1 2.6071 -3.7593 -0.9355 33 1 -0.5944 -5.4734 1.3413 34 1 0.0362 -3.8667 1.7762 35 1 2.1346 -4.9635 2.6073 36 1 1.4026 -6.5502 2.2685 37 1 -0.3749 -5.0800 3.8979 38 1 -1.3371 -4.9635 5.4386 39 1 -2.5093 -4.8752 7.5652 40 1 -1.4915 -6.2598 11.8688 41 1 0.7554 -7.2672 11.7308 42 1 2.0125 -6.9040 7.2804 43 1 -0.6953 -5.6181 -1.0021 44 1 0.5509 -4.7492 -2.0476 45 1 2.3873 -6.1924 -1.0579 46 1 1.1410 -7.0613 -0.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168032412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:57 Heat of formation + Delta-G solvation = 68.158029 kcal Electronic energy + Delta-G solvation = -27655.534711 eV Core-core repulsion = 23739.296582 eV Total energy + Delta-G solvation = -3916.238128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83268 -40.01612 -38.35494 -37.33923 -35.27337 -34.95894 -33.92473 -31.70195 -31.00347 -30.77789 -29.83005 -26.33738 -25.80276 -24.95998 -23.59534 -22.77831 -22.54555 -21.82857 -21.33805 -19.35860 -18.77286 -18.26917 -17.49712 -17.05995 -16.71468 -16.01101 -15.74734 -15.42552 -15.10167 -15.01694 -14.60243 -14.51244 -14.36009 -14.19577 -14.02633 -13.44947 -13.12804 -12.89351 -12.70747 -12.30614 -12.23480 -12.18177 -12.11758 -12.09917 -11.89241 -11.48187 -11.14965 -10.97567 -10.82921 -10.64406 -10.21757 -10.09410 -9.91942 -9.66550 -9.57134 -9.47324 -9.34294 -9.14648 -8.97244 -8.85048 -6.90834 -5.76645 -3.04461 -0.35412 -0.01419 1.41341 1.97588 2.91053 3.01201 3.44312 3.48660 3.49531 3.55265 3.62613 3.69685 3.79772 4.03663 4.29387 4.38499 4.46206 4.59225 4.61226 4.70584 4.92937 4.99055 5.05923 5.12919 5.25203 5.29873 5.41150 5.50934 5.56895 5.60378 5.64832 5.67622 5.73041 5.79991 5.90117 6.11267 6.12236 6.16303 6.21581 6.36172 6.41768 6.45122 6.53037 6.75125 6.78598 6.83493 7.24595 7.35613 7.70061 8.03886 8.42665 9.54260 10.12342 10.48161 11.46119 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002238 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.615235 B =12505.832928 C =13950.441231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.119 4.119 12 C -0.092 4.092 13 C 0.124 3.876 14 N -0.718 5.718 15 C 0.556 3.444 16 O -0.531 6.531 17 C -0.111 4.111 18 C -0.073 4.073 19 C -0.085 4.085 20 C 0.092 3.908 21 N -0.427 5.427 22 C 0.084 3.916 23 C 0.073 3.927 24 N -0.416 5.416 25 C 0.069 3.931 26 C -0.014 4.014 27 C -0.164 4.164 28 C -0.177 4.177 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.027 0.973 32 H 0.017 0.983 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.177 0.823 41 H 0.178 0.822 42 H 0.156 0.844 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.240 -16.986 18.075 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.130 4.130 13 C 0.001 3.999 14 N -0.369 5.369 15 C 0.342 3.658 16 O -0.409 6.409 17 C -0.116 4.116 18 C -0.093 4.093 19 C -0.104 4.104 20 C -0.032 4.032 21 N -0.141 5.141 22 C -0.092 4.092 23 C -0.103 4.103 24 N -0.130 5.130 25 C -0.055 4.055 26 C -0.035 4.035 27 C -0.201 4.201 28 C -0.215 4.215 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.173 0.827 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.297 -17.155 17.726 25.039 hybrid contribution -0.324 1.213 0.145 1.264 sum -4.621 -15.942 17.871 24.390 Atomic orbital electron populations 1.69647 1.05046 1.25676 1.57927 1.24709 0.95518 0.97590 1.03141 0.86285 0.78540 0.83613 0.77867 1.21309 1.21714 1.21302 1.19189 0.91000 0.84182 1.42513 0.91327 1.42282 1.05877 0.99628 1.89352 1.20187 0.91912 0.84185 0.97752 1.21556 1.01767 0.96054 0.92659 1.21262 0.96851 1.02340 0.92503 1.21443 0.96558 1.01283 0.80591 1.45956 1.21463 1.60837 1.08654 1.18050 0.85528 0.78648 0.83590 1.90801 1.19229 1.45070 1.85776 1.20060 0.95462 1.01791 0.94281 1.21107 0.93209 0.96391 0.98594 1.20700 1.00865 0.99089 0.89779 1.19694 0.92309 0.97708 0.93448 1.68750 1.33774 1.13293 0.98280 1.24175 0.93761 0.93044 0.98225 1.24126 0.93221 0.96156 0.96764 1.68686 1.33579 1.12347 0.98385 1.19445 0.93179 0.99038 0.93811 1.21241 0.99855 0.94003 0.88361 1.22965 0.96448 1.03066 0.97654 1.22980 1.00079 0.94024 1.04424 0.93539 0.78162 0.95535 0.96537 0.91858 0.89344 0.90588 0.91407 0.76380 0.84009 0.83466 0.80566 0.80537 0.82661 0.89312 0.88582 0.88915 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.93 5.30 -59.91 -0.32 -18.25 16 10 C 0.19 3.72 6.10 -4.04 -0.02 3.70 16 11 C -0.12 -1.85 1.52 -154.51 -0.23 -2.08 16 12 C -0.09 -1.26 5.24 -26.74 -0.14 -1.40 16 13 C 0.12 1.66 5.51 -4.04 -0.02 1.64 16 14 N -0.72 -8.48 5.50 -61.24 -0.34 -8.82 16 15 C 0.56 7.42 7.77 -12.32 -0.10 7.32 16 16 O -0.53 -8.95 16.30 5.33 0.09 -8.86 16 17 C -0.11 -1.24 5.87 -105.00 -0.62 -1.85 16 18 C -0.07 -0.64 9.44 -39.58 -0.37 -1.01 16 19 C -0.09 -0.76 9.95 -39.55 -0.39 -1.16 16 20 C 0.09 0.98 6.59 -84.72 -0.56 0.42 16 21 N -0.43 -4.11 10.46 -10.74 -0.11 -4.22 16 22 C 0.08 0.54 11.21 -17.20 -0.19 0.35 16 23 C 0.07 0.49 11.21 -17.22 -0.19 0.30 16 24 N -0.42 -4.32 10.46 -10.81 -0.11 -4.44 16 25 C 0.07 0.78 6.58 -84.82 -0.56 0.22 16 26 C -0.01 -0.17 9.56 -38.69 -0.37 -0.54 16 27 C -0.16 -2.34 9.90 -26.73 -0.26 -2.61 16 28 C -0.18 -2.30 9.57 -26.73 -0.26 -2.55 16 29 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.38 9.90 7.46 -40.82 -0.30 9.59 16 31 H 0.03 0.54 7.69 -51.93 -0.40 0.15 16 32 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.09 1.42 7.64 -51.93 -0.40 1.02 16 35 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 36 H 0.07 0.88 7.80 -51.93 -0.41 0.48 16 37 H 0.40 3.68 6.46 -40.82 -0.26 3.42 16 38 H 0.14 0.88 6.35 -52.48 -0.33 0.55 16 39 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.18 0.41 8.06 -52.49 -0.42 -0.02 16 41 H 0.18 0.47 8.06 -52.48 -0.42 0.04 16 42 H 0.16 1.86 7.61 -52.49 -0.40 1.46 16 43 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 44 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.09 1.02 7.98 -51.93 -0.41 0.60 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -34.95 390.84 -9.97 -44.92 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.23 Total: 9.95 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -4.54 Total: -6.49 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.16 Total: -62.78 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.95 -9.97 -44.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168032412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.078 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds