Wall clock time and date at job start Tue Mar 31 2020 23:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99696 * 2 1 4 4 H 1.48497 * 109.46779 * 239.99624 * 3 2 1 5 5 H 1.48508 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47295 * 119.99571 * 3 2 1 7 7 C 1.38806 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00042 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00153 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47297 * 174.36806 * 10 9 7 12 12 C 1.52995 * 115.54802 * 294.94844 * 11 10 9 13 13 C 1.52993 * 109.47484 * 279.32618 * 12 11 10 14 14 N 1.46505 * 109.47506 * 175.45851 * 13 12 11 15 15 C 1.34778 * 119.99879 * 179.97438 * 14 13 12 16 16 O 1.21543 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.47860 * 119.99624 * 179.97438 * 15 14 13 18 18 C 1.40619 * 119.75866 * 0.02562 * 17 15 14 19 19 C 1.35731 * 120.84071 * 180.02562 * 18 17 15 20 20 C 1.40704 * 120.07732 * 0.23025 * 19 18 17 21 21 N 1.33803 * 120.85098 * 180.26686 * 20 19 18 22 22 C 1.31332 * 119.76049 * 179.80318 * 21 20 19 23 23 C 1.39749 * 120.71021 * 359.71433 * 22 21 20 24 24 N 1.31276 * 120.67748 * 0.02562 * 23 22 21 25 25 C 1.33817 * 119.73815 * 359.97438 * 24 23 22 26 26 C 1.38418 * 119.75634 * 180.02562 * 17 15 14 27 27 C 1.52999 * 117.51685 * 80.65216 * 11 10 9 28 28 C 1.53002 * 60.00082 * 107.48048 * 27 11 10 29 29 H 0.97002 * 120.00341 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00144 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47431 * 54.36703 * 10 9 7 32 32 H 1.08997 * 109.46892 * 294.36941 * 10 9 7 33 33 H 1.08997 * 109.46878 * 159.32257 * 12 11 10 34 34 H 1.08999 * 109.47152 * 39.32580 * 12 11 10 35 35 H 1.09001 * 109.47671 * 55.45519 * 13 12 11 36 36 H 1.09005 * 109.47068 * 295.45930 * 13 12 11 37 37 H 0.96995 * 119.99559 * 0.02562 * 14 13 12 38 38 H 1.08011 * 119.58101 * 359.97438 * 18 17 15 39 39 H 1.07993 * 119.96121 * 179.97438 * 19 18 17 40 40 H 1.07995 * 119.64285 * 179.69346 * 22 21 20 41 41 H 1.08003 * 119.66529 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.24810 * 359.97438 * 26 17 15 43 43 H 1.08998 * 117.49605 * 214.97465 * 27 11 10 44 44 H 1.09000 * 117.49984 * 359.97438 * 27 11 10 45 45 H 1.09000 * 117.49452 * 252.51034 * 28 27 11 46 46 H 1.08997 * 117.49891 * 107.48903 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0701 -4.8162 0.1421 12 6 0.3085 -4.8761 1.4677 13 6 1.1965 -5.5142 2.5377 14 7 0.5092 -5.4732 3.8309 15 6 1.1051 -5.9827 4.9272 16 8 2.2129 -6.4758 4.8431 17 6 0.4117 -5.9409 6.2324 18 6 -0.8696 -5.3687 6.3240 19 6 -1.5259 -5.3182 7.5110 20 6 -0.9242 -5.8375 8.6721 21 7 -1.5593 -5.8006 9.8492 22 6 -0.9792 -6.2951 10.9187 23 6 0.2940 -6.8660 10.8406 24 7 0.9353 -6.9187 9.6964 25 6 0.3653 -6.4216 8.5924 26 6 1.0285 -6.4651 7.3552 27 6 0.3325 -5.2743 -1.1177 28 6 1.4401 -6.1447 -0.5206 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.7584 -3.6720 0.8358 32 1 2.6071 -3.7593 -0.9355 33 1 -0.5944 -5.4734 1.3413 34 1 0.0362 -3.8667 1.7762 35 1 2.1346 -4.9635 2.6073 36 1 1.4026 -6.5502 2.2685 37 1 -0.3749 -5.0800 3.8979 38 1 -1.3371 -4.9635 5.4386 39 1 -2.5093 -4.8752 7.5652 40 1 -1.4915 -6.2598 11.8688 41 1 0.7554 -7.2672 11.7308 42 1 2.0125 -6.9040 7.2804 43 1 -0.6953 -5.6181 -1.0021 44 1 0.5509 -4.7492 -2.0476 45 1 2.3873 -6.1924 -1.0579 46 1 1.1410 -7.0613 -0.0123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168032412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:56 Heat of formation + Delta-G solvation = 43.845149 kcal Electronic energy + Delta-G solvation = -27656.588996 eV Core-core repulsion = 23739.296582 eV Total energy + Delta-G solvation = -3917.292414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.50994 -41.02679 -39.57302 -38.13438 -36.24537 -35.88139 -35.74373 -32.77099 -32.49525 -31.73042 -30.84111 -27.85711 -26.87576 -25.64468 -24.69366 -24.54093 -23.41641 -22.91717 -22.31486 -20.38640 -19.63729 -19.38344 -18.93067 -18.20855 -17.49177 -17.05548 -16.85372 -16.61426 -16.23090 -16.05157 -15.71142 -15.62518 -15.33882 -15.18296 -14.97321 -14.87863 -14.77630 -14.21702 -13.82398 -13.62235 -13.20150 -13.04526 -12.96578 -12.85906 -12.81340 -12.76777 -12.76087 -12.56282 -12.27066 -12.18148 -11.92476 -11.84692 -11.26834 -11.06681 -10.88733 -10.56324 -10.30366 -10.20350 -10.04991 -9.75533 -8.96473 -7.94251 -5.21434 -1.06681 -0.66896 0.67452 1.23949 1.46386 1.48532 1.54612 1.93596 2.13141 2.54460 2.90156 2.90793 2.95558 3.08015 3.15525 3.38410 3.47600 3.73233 3.82245 3.84893 3.86665 3.95806 3.97852 4.07184 4.10980 4.25954 4.40575 4.42228 4.49632 4.60477 4.68054 4.68777 4.85774 4.87431 4.94837 4.98264 4.99207 5.09822 5.12535 5.17533 5.28164 5.35013 5.35944 5.39963 5.47522 5.49350 6.17001 6.28330 6.39200 6.62834 7.03705 7.35677 8.11897 8.38179 9.28626 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002238 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.615235 B =12505.832928 C =13950.441231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.187 3.813 11 C -0.139 4.139 12 C -0.078 4.078 13 C 0.132 3.868 14 N -0.707 5.707 15 C 0.555 3.445 16 O -0.575 6.575 17 C -0.119 4.119 18 C -0.071 4.071 19 C -0.083 4.083 20 C 0.076 3.924 21 N -0.450 5.450 22 C 0.098 3.902 23 C 0.085 3.915 24 N -0.452 5.452 25 C 0.048 3.952 26 C -0.028 4.028 27 C -0.163 4.163 28 C -0.151 4.151 29 H 0.252 0.748 30 H 0.378 0.622 31 H 0.017 0.983 32 H 0.012 0.988 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.415 0.585 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.224 0.776 41 H 0.220 0.780 42 H 0.139 0.861 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 -17.857 19.694 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.060 3.940 11 C -0.140 4.140 12 C -0.116 4.116 13 C 0.009 3.991 14 N -0.359 5.359 15 C 0.343 3.657 16 O -0.455 6.455 17 C -0.124 4.124 18 C -0.091 4.091 19 C -0.102 4.102 20 C -0.046 4.046 21 N -0.164 5.164 22 C -0.079 4.079 23 C -0.092 4.092 24 N -0.166 5.166 25 C -0.074 4.074 26 C -0.049 4.049 27 C -0.200 4.200 28 C -0.189 4.189 29 H 0.060 0.940 30 H 0.210 0.790 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.253 0.747 38 H 0.185 0.815 39 H 0.186 0.814 40 H 0.240 0.760 41 H 0.237 0.763 42 H 0.157 0.843 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.627 -18.032 19.302 27.007 hybrid contribution 0.122 1.404 -0.176 1.420 sum -5.505 -16.628 19.126 25.934 Atomic orbital electron populations 1.69786 1.06275 1.26048 1.59361 1.25459 0.96406 1.00677 1.03768 0.85298 0.77319 0.79654 0.78005 1.20633 1.21856 1.20777 1.19546 0.91282 0.85598 1.41372 0.91368 1.42412 1.05660 1.00521 1.89116 1.20243 0.92722 0.84199 0.96809 1.21401 1.02264 0.96073 0.94293 1.21117 0.97644 1.01332 0.91469 1.21269 0.95455 1.01210 0.81208 1.45838 1.21878 1.60258 1.07878 1.18395 0.85036 0.77804 0.84482 1.90770 1.21149 1.47134 1.86472 1.19914 0.96496 1.03080 0.92862 1.21280 0.92106 0.95966 0.99711 1.20970 1.01497 0.98415 0.89291 1.19922 0.92192 0.97982 0.94548 1.68832 1.34306 1.14635 0.98661 1.25015 0.93519 0.90345 0.98985 1.24949 0.93169 0.94224 0.96822 1.68698 1.34837 1.13740 0.99333 1.19470 0.93837 1.00184 0.93937 1.21190 0.99550 0.94813 0.89342 1.23011 0.98000 1.03029 0.95998 1.23064 0.99716 0.93418 1.02674 0.93968 0.78995 0.96473 0.97064 0.88831 0.91981 0.93577 0.90488 0.74709 0.81494 0.81418 0.75998 0.76328 0.84317 0.87209 0.90265 0.88717 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.11 13.06 21.65 0.28 -57.83 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.73 -36.97 5.30 -343.45 -1.82 -38.79 16 10 C 0.19 7.56 6.10 86.38 0.53 8.09 16 11 C -0.14 -4.21 1.52 -52.18 -0.08 -4.29 16 12 C -0.08 -2.07 5.24 30.59 0.16 -1.91 16 13 C 0.13 3.51 5.51 86.38 0.48 3.99 16 14 N -0.71 -16.59 5.50 -465.96 -2.57 -19.16 16 15 C 0.56 15.32 7.77 86.79 0.67 16.00 16 16 O -0.57 -20.41 16.30 -3.85 -0.06 -20.48 16 17 C -0.12 -2.74 5.87 -20.11 -0.12 -2.85 16 18 C -0.07 -1.19 9.44 22.27 0.21 -0.98 16 19 C -0.08 -1.40 9.95 22.29 0.22 -1.18 16 20 C 0.08 1.56 6.59 40.32 0.27 1.82 16 21 N -0.45 -7.78 10.46 -187.89 -1.96 -9.75 16 22 C 0.10 0.96 11.21 85.13 0.95 1.91 16 23 C 0.09 0.93 11.21 85.14 0.95 1.88 16 24 N -0.45 -9.20 10.46 -188.12 -1.97 -11.17 16 25 C 0.05 1.09 6.58 40.26 0.27 1.36 16 26 C -0.03 -0.71 9.56 22.85 0.22 -0.49 16 27 C -0.16 -4.39 9.90 30.59 0.30 -4.08 16 28 C -0.15 -3.59 9.57 30.60 0.29 -3.29 16 29 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.38 19.86 7.46 -92.70 -0.69 19.17 16 31 H 0.02 0.73 7.69 -2.39 -0.02 0.71 16 32 H 0.01 0.48 8.09 -2.39 -0.02 0.46 16 33 H 0.09 1.93 7.94 -2.39 -0.02 1.92 16 34 H 0.06 2.00 7.64 -2.39 -0.02 1.98 16 35 H 0.05 1.51 7.69 -2.39 -0.02 1.49 16 36 H 0.08 1.93 7.80 -2.38 -0.02 1.91 16 37 H 0.41 7.21 6.46 -92.71 -0.60 6.62 16 38 H 0.17 1.80 6.35 -2.90 -0.02 1.78 16 39 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.22 -0.07 8.06 -2.91 -0.02 -0.09 16 41 H 0.22 0.28 8.06 -2.91 -0.02 0.25 16 42 H 0.14 3.75 7.61 -2.91 -0.02 3.73 16 43 H 0.11 2.49 8.08 -2.39 -0.02 2.47 16 44 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.12 2.20 7.98 -2.39 -0.02 2.18 16 Total: -1.00 -78.83 390.84 0.30 -78.53 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.26 Total: 30.81 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 6.63 Total: -0.64 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -8.03 Total: -136.70 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -78.83 0.30 -78.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168032412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.376 kcal (2) G-P(sol) polarization free energy of solvation -78.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds