Wall clock time and date at job start Tue Mar 31 2020 23:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.43206 * 119.99930 * 123.97103 * 3 2 1 5 5 N 3.51030 * 140.68942 * 123.96824 * 2 1 3 6 6 C 1.41065 * 120.00209 * 303.97144 * 3 2 1 7 7 C 1.38840 * 120.00177 * 354.69575 * 6 3 2 8 8 H 1.07997 * 119.99761 * 334.30872 * 7 6 3 9 9 C 1.40925 * 120.00284 * 154.30396 * 7 6 3 10 10 N 1.30290 * 120.00022 * 3.42211 * 9 7 6 11 11 Si 1.86798 * 119.99792 * 183.42217 * 9 7 6 12 12 H 1.48490 * 109.47579 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46934 * 120.00695 * 11 9 7 14 14 H 1.48499 * 109.47134 * 240.00055 * 11 9 7 15 15 N 1.38738 * 120.00060 * 174.68938 * 6 3 2 16 16 C 1.34775 * 119.99702 * 119.95633 * 15 6 3 17 17 O 1.21578 * 120.00022 * 4.35551 * 16 15 6 18 18 N 1.34769 * 120.00230 * 184.35585 * 16 15 6 19 19 C 1.46501 * 120.00100 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.47243 * 300.00035 * 19 18 16 21 21 C 1.52998 * 109.46849 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47525 * 299.99790 * 21 20 19 23 23 C 1.53003 * 109.46885 * 60.00232 * 22 21 20 24 24 C 1.53001 * 109.46993 * 60.00011 * 23 22 21 25 25 C 1.52996 * 109.47296 * 299.99738 * 24 23 22 26 26 C 1.53001 * 109.47183 * 60.00287 * 21 20 19 27 27 C 1.52998 * 109.47525 * 300.00429 * 25 24 23 28 28 C 1.53000 * 109.46918 * 60.00274 * 19 18 16 29 29 H 0.96994 * 120.00263 * 184.99655 * 10 9 7 30 30 H 0.96995 * 120.00508 * 300.23278 * 15 6 3 31 31 H 0.96999 * 120.00084 * 0.02562 * 18 16 15 32 32 H 1.09003 * 109.46899 * 300.00114 * 20 19 18 33 33 H 1.08992 * 109.46809 * 59.99989 * 20 19 18 34 34 H 1.09006 * 109.47021 * 179.97438 * 21 20 19 35 35 H 1.08992 * 109.47267 * 300.00672 * 22 21 20 36 36 H 1.08998 * 109.46959 * 179.97438 * 22 21 20 37 37 H 1.08996 * 109.47517 * 179.97438 * 23 22 21 38 38 H 1.09002 * 109.47121 * 180.02562 * 24 23 22 39 39 H 1.09002 * 109.46996 * 59.99923 * 24 23 22 40 40 H 1.09002 * 109.47220 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.46996 * 179.97438 * 26 21 20 42 42 H 1.08998 * 109.47328 * 59.99897 * 26 21 20 43 43 H 1.09002 * 109.46899 * 299.99603 * 27 25 24 44 44 H 1.09003 * 109.47490 * 180.02562 * 27 25 24 45 45 H 1.08993 * 109.46910 * 299.99302 * 28 19 18 46 46 H 1.08996 * 109.47525 * 60.00141 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.6940 -1.0285 5 7 3.8520 1.2425 -1.8443 6 6 3.2736 -0.6817 1.0131 7 6 2.5842 -1.2603 2.0703 8 1 1.6199 -0.8720 2.3631 9 6 3.1427 -2.3542 2.7613 10 7 4.3345 -2.7803 2.4520 11 14 2.1742 -3.1932 4.1205 12 1 0.8577 -2.5242 4.2758 13 1 1.9652 -4.6211 3.7703 14 1 2.9299 -3.1019 5.3955 15 7 4.6566 -0.7747 0.9531 16 6 5.4102 -0.2616 1.9457 17 8 4.8775 0.2119 2.9307 18 7 6.7541 -0.2733 1.8464 19 6 7.5732 0.2850 2.9251 20 6 7.2294 1.7640 3.1135 21 6 8.0844 2.3468 4.2405 22 6 7.8025 1.5883 5.5390 23 6 8.1464 0.1094 5.3506 24 6 9.6271 -0.0281 4.9908 25 6 9.9090 0.7303 3.6923 26 6 9.5651 2.2093 3.8806 27 6 9.0540 0.1475 2.5653 28 6 7.2920 -0.4734 4.2238 29 1 4.6900 -3.5768 2.8763 30 1 5.0813 -1.2054 0.1949 31 1 7.1791 -0.6506 1.0604 32 1 7.4298 2.3043 2.1882 33 1 6.1747 1.8619 3.3703 34 1 7.8398 3.4005 4.3744 35 1 6.7477 1.6862 5.7953 36 1 8.4120 2.0033 6.3417 37 1 7.9461 -0.4310 6.2758 38 1 9.8720 -1.0817 4.8561 39 1 10.2362 0.3872 5.7937 40 1 10.9640 0.6327 3.4361 41 1 10.1742 2.6249 4.6834 42 1 9.7659 2.7497 2.9556 43 1 9.2989 -0.9061 2.4310 44 1 9.2551 0.6876 1.6400 45 1 6.2373 -0.3754 4.4806 46 1 7.5370 -1.5270 4.0897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186699288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:20 Heat of formation + Delta-G solvation = 5.654689 kcal Electronic energy + Delta-G solvation = -30820.242843 eV Core-core repulsion = 26901.294366 eV Total energy + Delta-G solvation = -3918.948477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.51968 -39.20436 -36.48983 -35.04651 -34.63897 -34.08934 -33.22432 -32.55378 -32.52035 -30.89851 -29.11106 -27.00109 -25.90798 -25.77698 -22.68390 -21.55385 -21.35131 -20.97582 -19.95463 -18.71310 -17.67773 -17.43893 -17.19783 -16.27023 -15.88838 -14.87909 -14.42350 -14.37105 -14.31152 -14.26254 -13.86093 -13.57310 -13.25109 -13.12170 -13.00274 -12.82077 -12.69762 -12.50201 -12.36923 -12.28120 -12.20666 -11.80078 -11.61708 -11.49882 -11.39139 -11.00215 -10.92347 -10.88264 -10.85926 -10.80484 -10.79530 -10.60799 -10.45532 -10.22304 -9.97642 -9.73840 -9.68192 -8.97574 -8.81798 -8.40233 -7.81899 -7.26440 -5.32221 2.20633 2.78653 2.85015 2.92386 3.37802 3.51006 3.93398 4.12042 4.16794 4.30303 4.38278 4.53473 4.56378 4.67511 5.01802 5.08598 5.17662 5.23460 5.25893 5.26780 5.32373 5.38247 5.38889 5.45996 5.57248 5.68683 5.70266 5.80489 5.84294 5.91554 6.01182 6.02673 6.10690 6.11943 6.21466 6.30748 6.32149 6.35581 6.41705 6.54418 6.56685 6.72051 6.75795 7.13838 7.19254 7.26137 7.50742 7.81521 7.93567 8.26392 8.82038 9.01828 9.20648 9.31547 9.55517 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.004384 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.412419 B = 6385.648692 C = 7731.920986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C 0.327 3.673 3 C -0.315 4.315 4 C 0.312 3.688 5 N -0.540 5.540 6 C 0.394 3.606 7 C -0.349 4.349 8 H 0.108 0.892 9 C 0.079 3.921 10 N -0.728 5.728 11 Si 0.930 3.070 12 H -0.249 1.249 13 H -0.265 1.265 14 H -0.264 1.264 15 N -0.668 5.668 16 C 0.736 3.264 17 O -0.574 6.574 18 N -0.746 5.746 19 C 0.210 3.790 20 C -0.125 4.125 21 C -0.082 4.082 22 C -0.107 4.107 23 C -0.083 4.083 24 C -0.109 4.109 25 C -0.079 4.079 26 C -0.110 4.110 27 C -0.114 4.114 28 C -0.120 4.120 29 H 0.296 0.704 30 H 0.391 0.609 31 H 0.389 0.611 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.912 -1.368 9.077 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.219 5.219 2 C 0.019 3.981 3 C -0.334 4.334 4 C 0.006 3.994 5 N -0.223 5.223 6 C 0.290 3.710 7 C -0.376 4.376 8 H 0.126 0.874 9 C -0.151 4.151 10 N -0.347 5.347 11 Si 0.752 3.248 12 H -0.172 1.172 13 H -0.190 1.190 14 H -0.188 1.188 15 N -0.315 5.315 16 C 0.437 3.563 17 O -0.450 6.450 18 N -0.400 5.400 19 C 0.123 3.877 20 C -0.163 4.163 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.102 4.102 24 C -0.146 4.146 25 C -0.098 4.098 26 C -0.147 4.147 27 C -0.152 4.152 28 C -0.158 4.158 29 H 0.108 0.892 30 H 0.226 0.774 31 H 0.221 0.779 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.110 0.890 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.810 -0.200 8.806 17.231 hybrid contribution 0.467 -1.191 0.056 1.281 sum 15.277 -1.391 8.861 17.715 Atomic orbital electron populations 1.81045 1.12242 1.16111 1.12508 1.24671 0.91305 0.90739 0.91352 1.12924 0.83087 1.31010 1.06350 1.25207 0.92333 0.90646 0.91247 1.81031 1.10071 1.17098 1.14112 1.16489 0.79511 0.85095 0.89922 1.20233 1.03092 1.06723 1.07573 0.87421 1.26504 0.94482 0.97176 0.96969 1.69457 1.13639 1.18052 1.33541 0.85841 0.80924 0.78977 0.79091 1.17171 1.18968 1.18847 1.41960 1.05087 1.60724 1.23696 1.15345 0.80489 0.77973 0.82450 1.90809 1.71748 1.52116 1.30328 1.45154 1.04765 1.67134 1.22961 1.19807 0.88428 0.92871 0.86545 1.21980 1.02235 0.94364 0.97732 1.21027 0.94575 0.99163 0.95314 1.21527 1.01503 0.94779 0.96629 1.21039 0.94550 0.96225 0.98385 1.21580 0.96388 0.99842 0.96828 1.20980 0.98622 0.95239 0.94935 1.21586 0.96314 0.95695 1.01107 1.21755 0.93859 1.01175 0.98433 1.21907 1.02232 0.98207 0.93451 0.89213 0.77435 0.77874 0.92572 0.88953 0.91390 0.91558 0.92524 0.91512 0.92154 0.92220 0.91246 0.92184 0.92107 0.91569 0.91605 0.88974 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -13.14 18.54 41.84 0.78 -12.37 16 2 C 0.33 7.74 14.02 -22.47 -0.32 7.43 16 3 C -0.31 -7.11 5.88 -104.98 -0.62 -7.73 16 4 C 0.31 7.15 14.82 -22.48 -0.33 6.81 16 5 N -0.54 -12.69 18.53 41.82 0.78 -11.91 16 6 C 0.39 8.54 5.54 -83.44 -0.46 8.08 16 7 C -0.35 -7.63 7.53 -38.34 -0.29 -7.91 16 8 H 0.11 2.43 7.23 -52.49 -0.38 2.05 16 9 C 0.08 1.57 5.10 -17.19 -0.09 1.48 16 10 N -0.73 -13.90 10.69 55.60 0.59 -13.30 16 11 Si 0.93 15.88 29.57 -169.99 -5.03 10.85 16 12 H -0.25 -4.42 7.11 56.52 0.40 -4.02 16 13 H -0.27 -4.37 7.11 56.52 0.40 -3.97 16 14 H -0.26 -4.53 7.11 56.52 0.40 -4.12 16 15 N -0.67 -12.87 3.21 -13.98 -0.04 -12.92 16 16 C 0.74 13.98 6.35 -86.93 -0.55 13.43 16 17 O -0.57 -12.60 11.60 5.30 0.06 -12.54 16 18 N -0.75 -11.29 5.11 -52.42 -0.27 -11.56 16 19 C 0.21 2.85 0.80 -131.82 -0.11 2.75 16 20 C -0.12 -1.80 4.40 -26.73 -0.12 -1.92 16 21 C -0.08 -0.96 3.19 -90.62 -0.29 -1.25 16 22 C -0.11 -1.24 5.19 -26.73 -0.14 -1.38 16 23 C -0.08 -0.97 3.19 -90.64 -0.29 -1.26 16 24 C -0.11 -1.06 5.19 -26.73 -0.14 -1.20 16 25 C -0.08 -0.76 3.19 -90.62 -0.29 -1.05 16 26 C -0.11 -1.08 5.19 -26.73 -0.14 -1.22 16 27 C -0.11 -1.23 4.59 -26.73 -0.12 -1.35 16 28 C -0.12 -1.71 4.40 -26.75 -0.12 -1.83 16 29 H 0.30 5.15 8.29 -40.82 -0.34 4.81 16 30 H 0.39 6.81 8.84 -40.82 -0.36 6.45 16 31 H 0.39 5.05 8.49 -40.82 -0.35 4.70 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.65 6.16 -51.93 -0.32 1.33 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.66 6.16 -51.93 -0.32 1.34 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -26.12 368.19 -8.35 -34.47 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.36 Total: 11.83 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: -4.40 Total: 11.89 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 1.83 Total: -62.05 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.06 Total: -12.54 kcal Atomic # 14 Polarization: 15.88 SS G_CDS: -5.03 Total: 10.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -26.12 -8.35 -34.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186699288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.121 kcal (2) G-P(sol) polarization free energy of solvation -26.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds