Wall clock time and date at job start Tue Mar 31 2020 23:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.43206 * 119.99930 * 123.97103 * 3 2 1 5 5 N 3.51030 * 140.68942 * 123.96824 * 2 1 3 6 6 C 1.41065 * 120.00209 * 303.97144 * 3 2 1 7 7 C 1.38840 * 120.00177 * 354.69575 * 6 3 2 8 8 H 1.07997 * 119.99761 * 334.30872 * 7 6 3 9 9 C 1.40925 * 120.00284 * 154.30396 * 7 6 3 10 10 N 1.30290 * 120.00022 * 3.42211 * 9 7 6 11 11 Si 1.86798 * 119.99792 * 183.42217 * 9 7 6 12 12 H 1.48490 * 109.47579 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46934 * 120.00695 * 11 9 7 14 14 H 1.48499 * 109.47134 * 240.00055 * 11 9 7 15 15 N 1.38738 * 120.00060 * 174.68938 * 6 3 2 16 16 C 1.34775 * 119.99702 * 119.95633 * 15 6 3 17 17 O 1.21578 * 120.00022 * 4.35551 * 16 15 6 18 18 N 1.34769 * 120.00230 * 184.35585 * 16 15 6 19 19 C 1.46501 * 120.00100 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.47243 * 300.00035 * 19 18 16 21 21 C 1.52998 * 109.46849 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47525 * 299.99790 * 21 20 19 23 23 C 1.53003 * 109.46885 * 60.00232 * 22 21 20 24 24 C 1.53001 * 109.46993 * 60.00011 * 23 22 21 25 25 C 1.52996 * 109.47296 * 299.99738 * 24 23 22 26 26 C 1.53001 * 109.47183 * 60.00287 * 21 20 19 27 27 C 1.52998 * 109.47525 * 300.00429 * 25 24 23 28 28 C 1.53000 * 109.46918 * 60.00274 * 19 18 16 29 29 H 0.96994 * 120.00263 * 184.99655 * 10 9 7 30 30 H 0.96995 * 120.00508 * 300.23278 * 15 6 3 31 31 H 0.96999 * 120.00084 * 0.02562 * 18 16 15 32 32 H 1.09003 * 109.46899 * 300.00114 * 20 19 18 33 33 H 1.08992 * 109.46809 * 59.99989 * 20 19 18 34 34 H 1.09006 * 109.47021 * 179.97438 * 21 20 19 35 35 H 1.08992 * 109.47267 * 300.00672 * 22 21 20 36 36 H 1.08998 * 109.46959 * 179.97438 * 22 21 20 37 37 H 1.08996 * 109.47517 * 179.97438 * 23 22 21 38 38 H 1.09002 * 109.47121 * 180.02562 * 24 23 22 39 39 H 1.09002 * 109.46996 * 59.99923 * 24 23 22 40 40 H 1.09002 * 109.47220 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.46996 * 179.97438 * 26 21 20 42 42 H 1.08998 * 109.47328 * 59.99897 * 26 21 20 43 43 H 1.09002 * 109.46899 * 299.99603 * 27 25 24 44 44 H 1.09003 * 109.47490 * 180.02562 * 27 25 24 45 45 H 1.08993 * 109.46910 * 299.99302 * 28 19 18 46 46 H 1.08996 * 109.47525 * 60.00141 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.6940 -1.0285 5 7 3.8520 1.2425 -1.8443 6 6 3.2736 -0.6817 1.0131 7 6 2.5842 -1.2603 2.0703 8 1 1.6199 -0.8720 2.3631 9 6 3.1427 -2.3542 2.7613 10 7 4.3345 -2.7803 2.4520 11 14 2.1742 -3.1932 4.1205 12 1 0.8577 -2.5242 4.2758 13 1 1.9652 -4.6211 3.7703 14 1 2.9299 -3.1019 5.3955 15 7 4.6566 -0.7747 0.9531 16 6 5.4102 -0.2616 1.9457 17 8 4.8775 0.2119 2.9307 18 7 6.7541 -0.2733 1.8464 19 6 7.5732 0.2850 2.9251 20 6 7.2294 1.7640 3.1135 21 6 8.0844 2.3468 4.2405 22 6 7.8025 1.5883 5.5390 23 6 8.1464 0.1094 5.3506 24 6 9.6271 -0.0281 4.9908 25 6 9.9090 0.7303 3.6923 26 6 9.5651 2.2093 3.8806 27 6 9.0540 0.1475 2.5653 28 6 7.2920 -0.4734 4.2238 29 1 4.6900 -3.5768 2.8763 30 1 5.0813 -1.2054 0.1949 31 1 7.1791 -0.6506 1.0604 32 1 7.4298 2.3043 2.1882 33 1 6.1747 1.8619 3.3703 34 1 7.8398 3.4005 4.3744 35 1 6.7477 1.6862 5.7953 36 1 8.4120 2.0033 6.3417 37 1 7.9461 -0.4310 6.2758 38 1 9.8720 -1.0817 4.8561 39 1 10.2362 0.3872 5.7937 40 1 10.9640 0.6327 3.4361 41 1 10.1742 2.6249 4.6834 42 1 9.7659 2.7497 2.9556 43 1 9.2989 -0.9061 2.4310 44 1 9.2551 0.6876 1.6400 45 1 6.2373 -0.3754 4.4806 46 1 7.5370 -1.5270 4.0897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186699288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:19 Heat of formation + Delta-G solvation = -7.353524 kcal Electronic energy + Delta-G solvation = -30820.806921 eV Core-core repulsion = 26901.294366 eV Total energy + Delta-G solvation = -3919.512555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.54732 -40.67502 -38.13255 -36.74008 -36.51552 -35.45874 -34.82768 -33.47162 -33.43774 -32.40664 -30.47961 -28.72963 -26.84265 -26.73718 -24.16644 -22.60324 -22.29656 -22.28168 -21.30189 -20.41545 -19.12589 -18.90741 -18.39323 -17.81639 -17.23346 -16.25578 -15.74630 -15.43394 -15.30589 -15.26769 -15.21352 -14.97418 -14.59870 -14.37940 -14.21717 -14.08842 -14.04913 -13.89313 -13.83261 -13.44694 -13.43175 -13.33247 -13.29064 -13.25324 -12.98939 -12.69875 -12.63436 -12.04674 -11.95490 -11.86088 -11.72265 -11.70793 -11.60149 -11.49935 -11.27041 -10.73170 -10.69881 -10.48929 -10.25100 -9.73107 -9.44101 -8.87492 -7.09326 0.58681 1.34786 1.46097 1.51266 1.95531 2.08113 2.09713 2.22985 2.49268 2.65401 2.71339 3.42895 3.44411 3.63957 3.66013 3.85239 3.95590 4.15106 4.24504 4.31396 4.35997 4.37893 4.39971 4.48114 4.53505 4.61260 4.71209 4.72773 4.83565 4.90932 4.92129 4.96907 5.17666 5.19663 5.20217 5.22975 5.27017 5.31194 5.43380 5.46163 5.46760 5.55545 5.60845 5.65886 5.68418 5.93716 6.00581 6.15374 6.34540 6.59387 7.17829 7.32724 7.41584 7.75976 8.04985 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.004384 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.412419 B = 6385.648692 C = 7731.920986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C 0.330 3.670 3 C -0.327 4.327 4 C 0.319 3.681 5 N -0.554 5.554 6 C 0.384 3.616 7 C -0.356 4.356 8 H 0.094 0.906 9 C 0.050 3.950 10 N -0.721 5.721 11 Si 0.982 3.018 12 H -0.262 1.262 13 H -0.247 1.247 14 H -0.263 1.263 15 N -0.664 5.664 16 C 0.732 3.268 17 O -0.606 6.606 18 N -0.734 5.734 19 C 0.205 3.795 20 C -0.122 4.122 21 C -0.081 4.081 22 C -0.106 4.106 23 C -0.082 4.082 24 C -0.104 4.104 25 C -0.076 4.076 26 C -0.105 4.105 27 C -0.109 4.109 28 C -0.113 4.113 29 H 0.309 0.691 30 H 0.399 0.601 31 H 0.401 0.599 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.148 -2.387 10.143 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.242 5.242 2 C 0.023 3.977 3 C -0.347 4.347 4 C 0.013 3.987 5 N -0.237 5.237 6 C 0.279 3.721 7 C -0.383 4.383 8 H 0.112 0.888 9 C -0.180 4.180 10 N -0.340 5.340 11 Si 0.801 3.199 12 H -0.186 1.186 13 H -0.170 1.170 14 H -0.187 1.187 15 N -0.312 5.312 16 C 0.434 3.566 17 O -0.485 6.485 18 N -0.389 5.389 19 C 0.119 3.881 20 C -0.161 4.161 21 C -0.100 4.100 22 C -0.143 4.143 23 C -0.101 4.101 24 C -0.141 4.141 25 C -0.095 4.095 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.152 4.152 29 H 0.121 0.879 30 H 0.235 0.765 31 H 0.235 0.765 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.103 -1.230 9.835 20.639 hybrid contribution -0.537 -0.898 -0.195 1.064 sum 17.566 -2.128 9.640 20.150 Atomic orbital electron populations 1.81021 1.12709 1.17146 1.13308 1.24868 0.91551 0.90343 0.90902 1.12971 0.82665 1.32059 1.06970 1.25208 0.92103 0.90377 0.91045 1.81016 1.10448 1.17733 1.14543 1.16498 0.80620 0.85137 0.89810 1.20365 1.02744 1.07239 1.07925 0.88792 1.27023 0.95511 0.97130 0.98374 1.69402 1.13489 1.18038 1.33048 0.85095 0.79040 0.78884 0.76864 1.18607 1.17018 1.18739 1.41869 1.04285 1.60849 1.24152 1.15532 0.81568 0.77671 0.81855 1.90803 1.72725 1.53352 1.31611 1.45142 1.03484 1.66395 1.23863 1.20028 0.90250 0.91939 0.85846 1.21892 1.00243 0.95383 0.98534 1.21031 0.95948 0.98863 0.94142 1.21513 1.00297 0.95161 0.97339 1.21045 0.95942 0.95799 0.97314 1.21565 0.94370 1.00603 0.97563 1.21041 0.99704 0.94638 0.94140 1.21576 0.94318 0.96273 1.02082 1.21762 0.91197 1.02250 0.99487 1.21780 1.00109 0.98332 0.94943 0.87869 0.76452 0.76454 0.93227 0.93371 0.91422 0.94343 0.90152 0.91351 0.91425 0.90195 0.88487 0.90126 0.91672 0.90474 0.90862 0.93457 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.92 18.54 19.00 0.35 -27.57 16 2 C 0.33 16.01 14.02 88.33 1.24 17.25 16 3 C -0.33 -15.16 5.88 -20.09 -0.12 -15.28 16 4 C 0.32 14.80 14.82 88.34 1.31 16.11 16 5 N -0.55 -26.17 18.53 19.00 0.35 -25.82 16 6 C 0.38 17.05 5.54 38.89 0.22 17.27 16 7 C -0.36 -15.91 7.53 23.07 0.17 -15.74 16 8 H 0.09 4.41 7.23 -2.91 -0.02 4.39 16 9 C 0.05 1.98 5.10 85.58 0.44 2.42 16 10 N -0.72 -27.09 10.69 21.99 0.24 -26.85 16 11 Si 0.98 32.09 29.57 68.60 2.03 34.12 16 12 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 13 H -0.25 -7.35 7.11 99.48 0.71 -6.64 16 14 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 15 N -0.66 -25.99 3.21 -316.42 -1.02 -27.01 16 16 C 0.73 28.46 6.35 179.06 1.14 29.60 16 17 O -0.61 -27.88 11.60 -3.96 -0.05 -27.92 16 18 N -0.73 -22.15 5.11 -438.02 -2.24 -24.39 16 19 C 0.21 5.46 0.80 3.60 0.00 5.46 16 20 C -0.12 -3.58 4.40 30.59 0.13 -3.45 16 21 C -0.08 -1.81 3.19 -10.80 -0.03 -1.85 16 22 C -0.11 -2.36 5.19 30.59 0.16 -2.20 16 23 C -0.08 -1.79 3.19 -10.81 -0.03 -1.82 16 24 C -0.10 -1.62 5.19 30.59 0.16 -1.46 16 25 C -0.08 -1.15 3.19 -10.79 -0.03 -1.19 16 26 C -0.11 -1.70 5.19 30.60 0.16 -1.55 16 27 C -0.11 -2.04 4.59 30.59 0.14 -1.89 16 28 C -0.11 -3.22 4.40 30.58 0.13 -3.08 16 29 H 0.31 10.29 8.29 -92.71 -0.77 9.52 16 30 H 0.40 13.94 8.84 -92.71 -0.82 13.12 16 31 H 0.40 10.02 8.49 -92.71 -0.79 9.23 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.84 6.16 -2.39 -0.01 1.83 16 34 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.78 6.16 -2.39 -0.01 1.77 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -58.28 368.19 4.29 -54.00 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.56 Total: 32.84 kcal Atomic # 6 Polarization: 33.43 SS G_CDS: 5.18 Total: 38.60 kcal Atomic # 7 Polarization: -129.32 SS G_CDS: -2.32 Total: -131.64 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 32.09 SS G_CDS: 2.03 Total: 34.12 kcal Total: -58.28 4.29 -54.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186699288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.643 kcal (2) G-P(sol) polarization free energy of solvation -58.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds