Wall clock time and date at job start Tue Mar 31 2020 23:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81394 * 103.00075 * 2 1 4 4 H 1.09002 * 110.01732 * 54.93318 * 3 2 1 5 5 C 1.53875 * 110.03261 * 293.54497 * 3 2 1 6 6 C 1.54263 * 106.60094 * 240.66708 * 5 3 2 7 7 C 1.54892 * 104.19316 * 336.38619 * 6 5 3 8 8 H 1.08997 * 110.75539 * 279.62488 * 7 6 5 9 9 N 1.46498 * 110.75083 * 156.26016 * 7 6 5 10 10 C 1.46508 * 120.00014 * 301.45125 * 9 7 6 11 11 C 1.34777 * 120.00327 * 121.45582 * 9 7 6 12 12 O 1.21350 * 119.99825 * 7.77925 * 11 9 7 13 13 C 1.49446 * 120.00355 * 187.77615 * 11 9 7 14 14 O 1.21350 * 119.99814 * 6.63680 * 13 11 9 15 15 N 1.34781 * 120.00206 * 186.63394 * 13 11 9 16 16 C 1.46501 * 120.00094 * 174.95477 * 15 13 11 17 17 C 1.52998 * 109.47110 * 185.16788 * 16 15 13 18 18 C 1.50697 * 115.54786 * 62.79123 * 17 16 15 19 19 H 1.07993 * 120.00465 * 272.03331 * 18 17 16 20 20 C 1.37887 * 119.99792 * 92.03907 * 18 17 16 21 21 N 1.31514 * 119.99550 * 182.61019 * 20 18 17 22 22 Si 1.86796 * 119.99952 * 2.61456 * 20 18 17 23 23 H 1.48500 * 109.47384 * 93.59119 * 22 20 18 24 24 H 1.48505 * 109.47003 * 213.58976 * 22 20 18 25 25 H 1.48500 * 109.47112 * 333.58965 * 22 20 18 26 26 C 1.52995 * 117.49583 * 277.12303 * 17 16 15 27 27 C 1.52999 * 117.49736 * 208.46058 * 17 16 15 28 28 C 1.54263 * 110.07707 * 176.35422 * 3 2 1 29 29 H 1.09003 * 109.46872 * 299.99973 * 1 2 3 30 30 H 1.08994 * 109.47106 * 60.00082 * 1 2 3 31 31 H 1.09006 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.09007 * 110.03173 * 121.38228 * 5 3 2 33 33 H 1.09003 * 110.03436 * 359.95404 * 5 3 2 34 34 H 1.08997 * 110.48648 * 95.06728 * 6 5 3 35 35 H 1.09000 * 110.48643 * 217.71156 * 6 5 3 36 36 H 1.09000 * 109.46854 * 95.74310 * 10 9 7 37 37 H 1.09002 * 109.47079 * 215.74651 * 10 9 7 38 38 H 1.09001 * 109.46905 * 335.74384 * 10 9 7 39 39 H 0.96999 * 119.99400 * 354.95599 * 15 13 11 40 40 H 1.09005 * 109.47026 * 305.16831 * 16 15 13 41 41 H 1.08997 * 109.46809 * 65.16506 * 16 15 13 42 42 H 0.97000 * 119.99317 * 179.97438 * 21 20 18 43 43 H 1.08998 * 117.50241 * 359.97438 * 26 17 16 44 44 H 1.09003 * 117.49694 * 145.02689 * 26 17 16 45 45 H 1.08998 * 117.50096 * 214.97551 * 27 17 16 46 46 H 1.08998 * 117.50276 * 359.97438 * 27 17 16 47 47 H 1.08992 * 110.49013 * 261.59657 * 28 3 2 48 48 H 1.09005 * 110.48454 * 24.10572 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7326 2.2634 0.8383 5 6 1.7779 2.4110 -1.3253 6 6 3.0516 2.9701 -1.9923 7 6 4.0357 3.1807 -0.8149 8 1 3.8168 4.1107 -0.2901 9 7 5.4221 3.1637 -1.2879 10 6 5.9436 1.9860 -1.9861 11 6 6.2180 4.2315 -1.0807 12 8 5.8352 5.1472 -0.3825 13 6 7.5720 4.2877 -1.7107 14 8 7.9084 3.4327 -2.5034 15 7 8.4196 5.2881 -1.3985 16 6 9.7850 5.2839 -1.9294 17 6 10.5707 6.4495 -1.3253 18 6 10.7554 6.4033 0.1696 19 1 10.0093 6.8358 0.8196 20 6 11.8773 5.8089 0.7075 21 7 12.0139 5.7228 2.0127 22 14 13.2028 5.1260 -0.4176 23 1 14.2497 6.1572 -0.6320 24 1 13.8122 3.9247 0.2077 25 1 12.6006 4.7531 -1.7227 26 6 10.4048 7.8250 -1.9745 27 6 11.7076 7.0428 -2.1597 28 6 3.7501 1.9581 0.0921 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.0730 3.2192 -1.1302 33 1 1.3179 1.6610 -1.9688 34 1 3.4566 2.2509 -2.7041 35 1 2.8388 3.9184 -2.4859 36 1 5.8642 2.1371 -3.0626 37 1 6.9890 1.8369 -1.7161 38 1 5.3653 1.1078 -1.6988 39 1 8.1254 6.0108 -0.8222 40 1 10.2726 4.3441 -1.6705 41 1 9.7534 5.3902 -3.0138 42 1 12.8029 5.3043 2.3911 43 1 9.7364 7.8994 -2.8322 44 1 10.4299 8.6965 -1.3204 45 1 12.5891 7.4002 -1.6274 46 1 11.8962 6.6025 -3.1388 47 1 4.0471 2.1678 1.1196 48 1 4.2679 1.0745 -0.2809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261227282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:01 Heat of formation + Delta-G solvation = -58.726599 kcal Electronic energy + Delta-G solvation = -27654.351521 eV Core-core repulsion = 23835.762462 eV Total energy + Delta-G solvation = -3818.589059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.94328 -40.15853 -38.93968 -38.67935 -36.12508 -34.85020 -34.21306 -30.26987 -29.89614 -29.27149 -28.78378 -27.95194 -27.32570 -24.72413 -23.42302 -21.66383 -21.58336 -21.20939 -20.46493 -19.05807 -18.49965 -18.16211 -17.39780 -17.24358 -16.93457 -16.77103 -16.55480 -16.06561 -15.68099 -15.34300 -14.95235 -14.74331 -14.72665 -14.59965 -14.35451 -14.23819 -14.11468 -14.03601 -13.72138 -13.38614 -13.25304 -13.07761 -12.76634 -12.75425 -12.54149 -12.47573 -12.20998 -12.16120 -11.98484 -11.94680 -11.64762 -11.54432 -11.01612 -10.72463 -10.67244 -10.60614 -10.30430 -10.08820 -9.80547 -8.67044 -8.29812 -6.38001 0.33229 0.72357 1.27972 1.35618 1.40958 1.52268 1.65139 2.11601 2.36810 2.44124 3.04171 3.15361 3.38709 3.42526 3.54201 3.80533 3.98308 4.09513 4.21818 4.25491 4.33198 4.33814 4.36402 4.38333 4.39408 4.42944 4.49801 4.50079 4.64271 4.72656 4.75834 4.85437 4.85690 4.90331 5.01720 5.06063 5.08469 5.13677 5.21307 5.24853 5.28451 5.39446 5.48474 5.68075 5.90084 6.26478 6.29959 6.67018 6.71523 6.95874 7.32419 8.85203 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.002299 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.937622 B =12175.295461 C =12546.183263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.303 6.303 3 C -0.044 4.044 4 H 0.099 0.901 5 C -0.109 4.109 6 C -0.123 4.123 7 C 0.131 3.869 8 H 0.100 0.900 9 N -0.574 5.574 10 C 0.081 3.919 11 C 0.508 3.492 12 O -0.545 6.545 13 C 0.498 3.502 14 O -0.539 6.539 15 N -0.673 5.673 16 C 0.164 3.836 17 C -0.046 4.046 18 C -0.483 4.483 19 H 0.037 0.963 20 C 0.019 3.981 21 N -0.947 5.947 22 Si 0.939 3.061 23 H -0.270 1.270 24 H -0.305 1.305 25 H -0.229 1.229 26 C -0.158 4.158 27 C -0.184 4.184 28 C -0.111 4.111 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.413 0.587 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.265 0.735 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.073 0.927 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.866 -9.423 -10.610 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.076 6.076 3 C -0.174 4.174 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.162 4.162 7 C 0.028 3.972 8 H 0.118 0.882 9 N -0.306 5.306 10 C -0.060 4.060 11 C 0.291 3.709 12 O -0.422 6.422 13 C 0.278 3.722 14 O -0.418 6.418 15 N -0.323 5.323 16 C 0.041 3.959 17 C -0.047 4.047 18 C -0.521 4.521 19 H 0.055 0.945 20 C -0.179 4.179 21 N -0.586 5.586 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.233 1.233 25 H -0.151 1.151 26 C -0.195 4.195 27 C -0.222 4.222 28 C -0.150 4.150 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.249 0.751 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.124 0.876 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.126 0.874 47 H 0.092 0.908 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.046 -10.512 -10.640 26.641 hybrid contribution 0.188 1.060 0.805 1.344 sum -21.858 -9.451 -9.836 25.766 Atomic orbital electron populations 1.23441 0.91378 1.07264 1.05935 1.87163 1.10610 1.11904 1.97973 1.23650 0.98417 0.93138 1.02149 0.88246 1.22476 0.97402 1.00933 0.94055 1.22651 0.94404 1.02284 0.96848 1.22342 0.78915 0.99915 0.96057 0.88199 1.47671 1.11772 1.15609 1.55559 1.22114 1.00199 0.86293 0.97412 1.20227 0.86073 0.83320 0.81318 1.90736 1.75020 1.38448 1.38020 1.20160 0.86208 0.82624 0.83159 1.90683 1.77549 1.38663 1.34925 1.45749 1.12500 1.24739 1.49338 1.21073 0.79794 0.98456 0.96558 1.19486 1.00011 0.92411 0.92769 1.20352 1.05726 1.36821 0.89179 0.94492 1.25880 1.00630 0.95387 0.96018 1.70051 1.29821 1.45877 1.12873 0.85908 0.79364 0.77429 0.80874 1.19507 1.23322 1.15116 1.22951 0.99209 0.95100 1.02221 1.23014 0.92826 1.05439 1.00909 1.22506 0.93816 0.98135 1.00549 0.89795 0.89193 0.87390 0.89430 0.89415 0.90026 0.90395 0.91023 0.91083 0.88962 0.75117 0.93171 0.90697 0.92662 0.87605 0.89953 0.90361 0.87438 0.90813 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.58 113.37 1.20 0.25 16 2 S -0.30 -4.63 21.34 -56.49 -1.21 -5.83 16 3 C -0.04 -0.61 3.42 31.32 0.11 -0.50 16 4 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.11 -1.20 6.30 31.32 0.20 -1.00 16 6 C -0.12 -1.79 6.40 31.67 0.20 -1.59 16 7 C 0.13 2.66 3.30 46.28 0.15 2.81 16 8 H 0.10 2.33 7.03 -2.39 -0.02 2.31 16 9 N -0.57 -14.64 2.89 -816.95 -2.36 -17.00 16 10 C 0.08 1.80 7.98 127.77 1.02 2.82 16 11 C 0.51 16.74 7.71 87.27 0.67 17.42 16 12 O -0.54 -20.34 15.90 -3.25 -0.05 -20.39 16 13 C 0.50 17.87 7.66 87.27 0.67 18.54 16 14 O -0.54 -19.69 13.49 -3.25 -0.04 -19.74 16 15 N -0.67 -25.75 5.42 -464.41 -2.52 -28.26 16 16 C 0.16 6.45 5.40 86.38 0.47 6.91 16 17 C -0.05 -1.94 0.88 -52.93 -0.05 -1.98 16 18 C -0.48 -26.15 9.25 25.60 0.24 -25.91 16 19 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 20 C 0.02 1.05 5.47 84.66 0.46 1.51 16 21 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 22 Si 0.94 43.46 24.86 68.60 1.71 45.17 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 25 H -0.23 -9.47 6.12 99.48 0.61 -8.86 16 26 C -0.16 -5.62 9.96 30.62 0.30 -5.32 16 27 C -0.18 -6.86 7.08 30.62 0.22 -6.64 16 28 C -0.11 -1.99 5.90 31.67 0.19 -1.80 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.55 7.75 -2.39 -0.02 0.53 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.09 0.86 7.21 -2.39 -0.02 0.84 16 34 H 0.08 1.16 7.26 -2.39 -0.02 1.14 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.50 8.03 -2.39 -0.02 1.48 16 37 H 0.07 1.90 6.20 -2.39 -0.01 1.89 16 38 H 0.09 1.58 6.10 -2.39 -0.01 1.56 16 39 H 0.41 16.30 7.88 -92.71 -0.73 15.57 16 40 H 0.05 2.15 7.92 -2.38 -0.02 2.13 16 41 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 42 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.08 3.12 6.46 -2.39 -0.02 3.11 16 46 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 47 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.08 1.56 5.78 -2.38 -0.01 1.54 16 Total: -1.00 -67.81 390.84 2.01 -65.80 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.14 Total: 32.99 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 6.05 Total: 5.53 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.58 Total: -103.52 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.10 Total: -40.13 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.71 Total: 45.17 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -1.21 Total: -5.83 kcal Total: -67.81 2.01 -65.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.077 kcal (2) G-P(sol) polarization free energy of solvation -67.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds