Wall clock time and date at job start Tue Mar 31 2020 23:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 103.00271 * 2 1 4 4 H 1.08998 * 109.46895 * 55.00004 * 3 2 1 5 5 C 1.52995 * 109.47098 * 295.00179 * 3 2 1 6 6 C 1.53000 * 109.47428 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46849 * 59.99916 * 6 5 3 8 8 C 1.52995 * 109.47174 * 300.00240 * 7 6 5 9 9 C 1.52997 * 109.46962 * 175.00093 * 3 2 1 10 10 H 1.08997 * 109.47118 * 60.00686 * 9 3 2 11 11 N 1.46492 * 109.47402 * 299.99849 * 9 3 2 12 12 C 1.34774 * 120.00147 * 155.00057 * 11 9 3 13 13 O 1.21352 * 120.00031 * 0.02562 * 12 11 9 14 14 C 1.49453 * 120.00172 * 180.02562 * 12 11 9 15 15 O 1.21347 * 119.99922 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00172 * 179.97438 * 14 12 11 17 17 C 1.46501 * 120.00294 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.47342 * 184.79014 * 17 16 14 19 19 C 1.50696 * 115.54950 * 294.81383 * 18 17 16 20 20 H 1.08002 * 120.00407 * 99.44472 * 19 18 17 21 21 C 1.37877 * 119.99700 * 279.44085 * 19 18 17 22 22 N 1.31513 * 120.00474 * 5.14512 * 21 19 18 23 23 Si 1.86804 * 120.00057 * 185.42020 * 21 19 18 24 24 H 1.48492 * 109.47266 * 179.72499 * 23 21 19 25 25 H 1.48505 * 109.47007 * 299.72936 * 23 21 19 26 26 H 1.48507 * 109.47109 * 59.72356 * 23 21 19 27 27 C 1.53003 * 117.51518 * 80.50909 * 18 17 16 28 28 C 1.53000 * 117.49816 * 149.14023 * 18 17 16 29 29 H 1.08999 * 109.47216 * 59.99598 * 1 2 3 30 30 H 1.08994 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46525 * 300.00103 * 1 2 3 32 32 H 1.09007 * 109.47547 * 59.99676 * 5 3 2 33 33 H 1.08997 * 109.47616 * 300.00266 * 5 3 2 34 34 H 1.08998 * 109.46903 * 300.00031 * 6 5 3 35 35 H 1.09001 * 109.47813 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.46916 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46823 * 60.00055 * 7 6 5 38 38 H 1.09008 * 109.47168 * 300.00217 * 8 7 6 39 39 H 1.08994 * 109.47300 * 180.02562 * 8 7 6 40 40 H 0.97004 * 120.00234 * 335.00296 * 11 9 3 41 41 H 0.97003 * 120.00188 * 0.02562 * 16 14 12 42 42 H 1.09003 * 109.46549 * 64.78858 * 17 16 14 43 43 H 1.09000 * 109.46739 * 304.79048 * 17 16 14 44 44 H 0.97006 * 119.99488 * 355.28410 * 22 21 19 45 45 H 1.08993 * 117.49888 * 214.96670 * 27 18 17 46 46 H 1.08999 * 117.50048 * 359.97438 * 27 18 17 47 47 H 1.09000 * 117.49877 * 359.97438 * 28 18 17 48 48 H 1.09001 * 117.49844 * 144.97492 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4016 -1.3073 6 6 2.0865 3.8925 -1.3071 7 6 3.6014 4.0666 -1.1811 8 6 4.0807 3.4325 0.1262 9 6 3.7371 1.9410 0.1257 10 1 4.2296 1.4545 -0.7162 11 7 4.1960 1.3340 1.3774 12 6 5.4694 0.9078 1.4926 13 8 6.2359 1.0274 0.5594 14 6 5.9374 0.2879 2.7694 15 8 5.1708 0.1679 3.7023 16 7 7.2107 -0.1387 2.8843 17 6 7.6694 -0.7469 4.1357 18 6 9.1700 -1.0309 4.0448 19 6 9.5760 -2.0589 3.0203 20 1 9.9562 -1.7433 2.0599 21 6 9.4621 -3.4022 3.3091 22 7 8.9060 -3.7876 4.4368 23 14 10.1048 -4.6749 2.1021 24 1 9.8695 -6.0363 2.6462 25 1 9.3950 -4.5303 0.8057 26 1 11.5609 -4.4694 1.8947 27 6 10.1268 0.1374 4.2908 28 6 9.9811 -0.9662 5.3405 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 0.6636 2.2779 -1.3969 33 1 2.2353 1.9150 -2.1492 34 1 1.5936 4.3788 -0.4653 35 1 1.7447 4.3444 -2.2383 36 1 3.8463 5.1287 -1.1814 37 1 4.0942 3.5802 -2.0229 38 1 3.5877 3.9189 0.9680 39 1 5.1598 3.5570 0.2162 40 1 3.5833 1.2386 2.1235 41 1 7.8235 -0.0431 2.1385 42 1 7.1323 -1.6804 4.3042 43 1 7.4784 -0.0634 4.9631 44 1 8.6380 -3.1280 5.0957 45 1 11.0499 0.1625 3.7118 46 1 9.6872 1.1088 4.5171 47 1 9.4456 -0.7208 6.2577 48 1 10.8081 -1.6675 5.4521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261539824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:36 Heat of formation + Delta-G solvation = -71.501800 kcal Electronic energy + Delta-G solvation = -27721.005442 eV Core-core repulsion = 23901.862409 eV Total energy + Delta-G solvation = -3819.143033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.50921 -39.04305 -37.82662 -36.95840 -34.60371 -33.31278 -31.94840 -31.45102 -29.85901 -29.07755 -27.05154 -24.97886 -24.03170 -23.25506 -22.01483 -21.33736 -20.59507 -19.83363 -19.63352 -18.23143 -17.04677 -16.61630 -16.50238 -15.69778 -15.60828 -15.03967 -14.93636 -14.76892 -14.42612 -14.19987 -13.89272 -13.77481 -13.74512 -13.61565 -13.37530 -13.14006 -12.96340 -12.78834 -12.35444 -12.30342 -11.94489 -11.75147 -11.66378 -11.43050 -11.21569 -11.02382 -10.96957 -10.79432 -10.68793 -10.51528 -10.11677 -10.06209 -9.74057 -9.26046 -9.22474 -8.75918 -8.54512 -8.43580 -8.30248 -7.92277 -6.39346 -4.16050 1.33270 1.78426 2.26700 2.62082 3.43989 3.44988 3.59797 3.63546 3.93203 4.07680 4.35835 4.49100 4.51516 4.62587 4.73958 4.79599 4.84884 4.85838 4.88295 4.95647 5.04995 5.14706 5.27942 5.29103 5.37121 5.44285 5.58742 5.61012 5.67991 5.73546 5.76833 5.88563 5.99274 6.09571 6.19548 6.25919 6.29240 6.50251 6.56827 6.81753 6.91428 7.11478 7.17828 7.25634 7.83399 8.12630 8.15709 8.35170 8.50509 8.81395 9.59851 10.99634 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.002718 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.157791 B =10299.364263 C =10986.966148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.240 6.240 3 C -0.066 4.066 4 H 0.093 0.907 5 C -0.110 4.110 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.126 4.126 9 C 0.167 3.833 10 H 0.101 0.899 11 N -0.699 5.699 12 C 0.514 3.486 13 O -0.518 6.518 14 C 0.496 3.504 15 O -0.539 6.539 16 N -0.664 5.664 17 C 0.155 3.845 18 C 0.004 3.996 19 C -0.577 4.577 20 H 0.055 0.945 21 C 0.030 3.970 22 N -0.900 5.900 23 Si 1.066 2.934 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.287 1.287 27 C -0.192 4.192 28 C -0.172 4.172 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.413 0.587 41 H 0.415 0.585 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.275 0.725 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.577 15.236 -10.095 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.011 6.011 3 C -0.195 4.195 4 H 0.111 0.889 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.167 4.167 9 C 0.061 3.939 10 H 0.119 0.881 11 N -0.352 5.352 12 C 0.295 3.705 13 O -0.393 6.393 14 C 0.275 3.725 15 O -0.418 6.418 16 N -0.314 5.314 17 C 0.032 3.968 18 C 0.003 3.997 19 C -0.615 4.615 20 H 0.073 0.927 21 C -0.176 4.176 22 N -0.534 5.534 23 Si 0.894 3.106 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.214 1.214 27 C -0.229 4.229 28 C -0.210 4.210 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.250 0.750 41 H 0.251 0.749 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.771 12.626 -10.331 22.691 hybrid contribution -1.018 2.619 0.405 2.839 sum -16.789 15.245 -9.926 24.755 Atomic orbital electron populations 1.23429 0.94830 1.06588 1.04721 1.87468 1.06467 1.09382 1.97776 1.23570 0.98784 0.95015 1.02113 0.88871 1.21847 1.01199 0.95997 0.95976 1.21603 0.96495 0.95405 1.02282 1.21520 0.95449 1.01027 0.97611 1.21969 1.02594 0.93650 0.98448 1.20765 0.90882 0.94138 0.88089 0.88147 1.45746 1.11902 1.60824 1.16754 1.20400 0.82655 0.78699 0.88780 1.90748 1.54058 1.54554 1.39969 1.19919 0.83783 0.80966 0.87783 1.90713 1.54220 1.56782 1.40037 1.45768 1.10256 1.56954 1.18441 1.21228 0.96354 0.96430 0.82817 1.19307 0.87223 0.96380 0.96800 1.21235 1.48211 0.91423 1.00600 0.92670 1.25784 0.93994 0.98055 0.99804 1.70753 1.35778 1.38682 1.08145 0.83584 0.76150 0.75968 0.74911 1.20772 1.21322 1.21395 1.22866 1.02704 0.92657 1.04683 1.22781 1.03979 1.01625 0.92600 0.90547 0.88016 0.90532 0.91343 0.90165 0.91759 0.91255 0.91236 0.91278 0.91341 0.90362 0.75009 0.74889 0.90984 0.93482 0.91388 0.89893 0.91310 0.91237 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 10.45 101.05 1.06 0.16 16 2 S -0.24 -2.57 21.37 -107.50 -2.30 -4.86 16 3 C -0.07 -0.56 2.21 -26.73 -0.06 -0.62 16 4 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.11 -0.73 5.11 -26.73 -0.14 -0.86 16 6 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 7 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 8 C -0.13 -1.14 5.50 -26.70 -0.15 -1.29 16 9 C 0.17 1.79 1.90 -67.91 -0.13 1.66 16 10 H 0.10 1.28 7.58 -51.93 -0.39 0.88 16 11 N -0.70 -9.24 4.61 -54.21 -0.25 -9.49 16 12 C 0.51 8.68 7.86 -11.58 -0.09 8.59 16 13 O -0.52 -9.65 16.14 5.49 0.09 -9.56 16 14 C 0.50 9.66 7.89 -11.58 -0.09 9.57 16 15 O -0.54 -11.28 16.47 5.50 0.09 -11.19 16 16 N -0.66 -13.79 5.47 -60.73 -0.33 -14.12 16 17 C 0.15 3.49 5.36 -4.04 -0.02 3.47 16 18 C 0.00 0.09 0.91 -155.66 -0.14 -0.05 16 19 C -0.58 -15.32 8.57 -34.44 -0.30 -15.62 16 20 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 21 C 0.03 0.83 5.42 -17.82 -0.10 0.73 16 22 N -0.90 -26.03 13.61 55.43 0.75 -25.28 16 23 Si 1.07 24.73 29.91 -169.99 -5.08 19.64 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 27 C -0.19 -3.99 9.96 -26.73 -0.27 -4.26 16 28 C -0.17 -3.79 8.96 -26.73 -0.24 -4.03 16 29 H 0.08 0.43 7.14 -51.92 -0.37 0.06 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.07 0.38 6.92 -51.92 -0.36 0.02 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.41 5.20 8.07 -40.82 -0.33 4.87 16 41 H 0.41 8.60 7.80 -40.82 -0.32 8.28 16 42 H 0.07 1.83 7.65 -51.93 -0.40 1.43 16 43 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 44 H 0.27 7.86 6.08 -40.82 -0.25 7.61 16 45 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 48 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 401.98 15.07 6.06 6.06 Total: -1.00 -30.70 401.98 -9.91 -40.61 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -7.96 Total: 12.56 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.97 Total: -4.37 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.17 Total: -48.88 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.18 Total: -20.75 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.64 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.30 Total: -4.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.70 -9.91 -40.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261539824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.895 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds