Wall clock time and date at job start Tue Mar 31 2020 23:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 103.00271 * 2 1 4 4 H 1.08998 * 109.46895 * 55.00004 * 3 2 1 5 5 C 1.52995 * 109.47098 * 295.00179 * 3 2 1 6 6 C 1.53000 * 109.47428 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46849 * 59.99916 * 6 5 3 8 8 C 1.52995 * 109.47174 * 300.00240 * 7 6 5 9 9 C 1.52997 * 109.46962 * 175.00093 * 3 2 1 10 10 H 1.08997 * 109.47118 * 60.00686 * 9 3 2 11 11 N 1.46492 * 109.47402 * 299.99849 * 9 3 2 12 12 C 1.34774 * 120.00147 * 155.00057 * 11 9 3 13 13 O 1.21352 * 120.00031 * 0.02562 * 12 11 9 14 14 C 1.49453 * 120.00172 * 180.02562 * 12 11 9 15 15 O 1.21347 * 119.99922 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00172 * 179.97438 * 14 12 11 17 17 C 1.46501 * 120.00294 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.47342 * 184.79014 * 17 16 14 19 19 C 1.50696 * 115.54950 * 294.81383 * 18 17 16 20 20 H 1.08002 * 120.00407 * 99.44472 * 19 18 17 21 21 C 1.37877 * 119.99700 * 279.44085 * 19 18 17 22 22 N 1.31513 * 120.00474 * 5.14512 * 21 19 18 23 23 Si 1.86804 * 120.00057 * 185.42020 * 21 19 18 24 24 H 1.48492 * 109.47266 * 179.72499 * 23 21 19 25 25 H 1.48505 * 109.47007 * 299.72936 * 23 21 19 26 26 H 1.48507 * 109.47109 * 59.72356 * 23 21 19 27 27 C 1.53003 * 117.51518 * 80.50909 * 18 17 16 28 28 C 1.53000 * 117.49816 * 149.14023 * 18 17 16 29 29 H 1.08999 * 109.47216 * 59.99598 * 1 2 3 30 30 H 1.08994 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46525 * 300.00103 * 1 2 3 32 32 H 1.09007 * 109.47547 * 59.99676 * 5 3 2 33 33 H 1.08997 * 109.47616 * 300.00266 * 5 3 2 34 34 H 1.08998 * 109.46903 * 300.00031 * 6 5 3 35 35 H 1.09001 * 109.47813 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.46916 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46823 * 60.00055 * 7 6 5 38 38 H 1.09008 * 109.47168 * 300.00217 * 8 7 6 39 39 H 1.08994 * 109.47300 * 180.02562 * 8 7 6 40 40 H 0.97004 * 120.00234 * 335.00296 * 11 9 3 41 41 H 0.97003 * 120.00188 * 0.02562 * 16 14 12 42 42 H 1.09003 * 109.46549 * 64.78858 * 17 16 14 43 43 H 1.09000 * 109.46739 * 304.79048 * 17 16 14 44 44 H 0.97006 * 119.99488 * 355.28410 * 22 21 19 45 45 H 1.08993 * 117.49888 * 214.96670 * 27 18 17 46 46 H 1.08999 * 117.50048 * 359.97438 * 27 18 17 47 47 H 1.09000 * 117.49877 * 359.97438 * 28 18 17 48 48 H 1.09001 * 117.49844 * 144.97492 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4016 -1.3073 6 6 2.0865 3.8925 -1.3071 7 6 3.6014 4.0666 -1.1811 8 6 4.0807 3.4325 0.1262 9 6 3.7371 1.9410 0.1257 10 1 4.2296 1.4545 -0.7162 11 7 4.1960 1.3340 1.3774 12 6 5.4694 0.9078 1.4926 13 8 6.2359 1.0274 0.5594 14 6 5.9374 0.2879 2.7694 15 8 5.1708 0.1679 3.7023 16 7 7.2107 -0.1387 2.8843 17 6 7.6694 -0.7469 4.1357 18 6 9.1700 -1.0309 4.0448 19 6 9.5760 -2.0589 3.0203 20 1 9.9562 -1.7433 2.0599 21 6 9.4621 -3.4022 3.3091 22 7 8.9060 -3.7876 4.4368 23 14 10.1048 -4.6749 2.1021 24 1 9.8695 -6.0363 2.6462 25 1 9.3950 -4.5303 0.8057 26 1 11.5609 -4.4694 1.8947 27 6 10.1268 0.1374 4.2908 28 6 9.9811 -0.9662 5.3405 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 0.6636 2.2779 -1.3969 33 1 2.2353 1.9150 -2.1492 34 1 1.5936 4.3788 -0.4653 35 1 1.7447 4.3444 -2.2383 36 1 3.8463 5.1287 -1.1814 37 1 4.0942 3.5802 -2.0229 38 1 3.5877 3.9189 0.9680 39 1 5.1598 3.5570 0.2162 40 1 3.5833 1.2386 2.1235 41 1 7.8235 -0.0431 2.1385 42 1 7.1323 -1.6804 4.3042 43 1 7.4784 -0.0634 4.9631 44 1 8.6380 -3.1280 5.0957 45 1 11.0499 0.1625 3.7118 46 1 9.6872 1.1088 4.5171 47 1 9.4456 -0.7208 6.2577 48 1 10.8081 -1.6675 5.4521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261539824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:35 Heat of formation + Delta-G solvation = -90.463976 kcal Electronic energy + Delta-G solvation = -27721.827704 eV Core-core repulsion = 23901.862409 eV Total energy + Delta-G solvation = -3819.965295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.85516 -40.26878 -39.06420 -38.68844 -35.80830 -34.85434 -33.99142 -32.08126 -30.75126 -29.63684 -28.71017 -27.01209 -25.34304 -23.90807 -23.21239 -22.86255 -21.63701 -21.52235 -20.89898 -19.69579 -18.52453 -18.05247 -17.66784 -17.04664 -16.85562 -16.53726 -15.93328 -15.79816 -15.63099 -15.40836 -15.24835 -14.97468 -14.89182 -14.60657 -14.39996 -14.32151 -14.28258 -13.92015 -13.77759 -13.58119 -12.92612 -12.89741 -12.86008 -12.64843 -12.62814 -12.29689 -12.23927 -11.96784 -11.95715 -11.58725 -11.53281 -11.35879 -10.87111 -10.73882 -10.61052 -10.51863 -10.32267 -10.29426 -10.12693 -8.74886 -8.54572 -6.30803 0.30613 0.63344 1.27466 1.54858 1.60616 1.61436 1.79486 2.10806 2.55190 2.59423 3.18982 3.25469 3.32933 3.46312 3.70387 3.86459 3.98268 4.02312 4.12133 4.19905 4.30901 4.32339 4.33252 4.35179 4.36042 4.41560 4.47261 4.69068 4.72434 4.80259 4.82592 4.86109 4.88869 5.04072 5.07572 5.09689 5.15541 5.20801 5.25694 5.27001 5.31027 5.44410 5.45730 5.91152 6.11784 6.23169 6.36420 6.68517 6.69795 6.91609 7.51090 8.85348 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.002718 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.157791 B =10299.364263 C =10986.966148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.325 6.325 3 C -0.045 4.045 4 H 0.109 0.891 5 C -0.106 4.106 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.122 4.122 9 C 0.164 3.836 10 H 0.077 0.923 11 N -0.680 5.680 12 C 0.518 3.482 13 O -0.540 6.540 14 C 0.495 3.505 15 O -0.554 6.554 16 N -0.669 5.669 17 C 0.170 3.830 18 C -0.024 4.024 19 C -0.581 4.581 20 H 0.048 0.952 21 C -0.016 4.016 22 N -0.928 5.928 23 Si 1.105 2.895 24 H -0.287 1.287 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.165 4.165 28 C -0.171 4.171 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.418 0.582 41 H 0.414 0.586 42 H 0.036 0.964 43 H 0.059 0.941 44 H 0.266 0.734 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.150 17.429 -11.100 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.097 6.097 3 C -0.173 4.173 4 H 0.128 0.872 5 C -0.146 4.146 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.162 4.162 9 C 0.059 3.941 10 H 0.096 0.904 11 N -0.332 5.332 12 C 0.298 3.702 13 O -0.417 6.417 14 C 0.276 3.724 15 O -0.434 6.434 16 N -0.318 5.318 17 C 0.046 3.954 18 C -0.025 4.025 19 C -0.619 4.619 20 H 0.066 0.934 21 C -0.217 4.217 22 N -0.564 5.564 23 Si 0.929 3.071 24 H -0.213 1.213 25 H -0.204 1.204 26 H -0.195 1.195 27 C -0.202 4.202 28 C -0.209 4.209 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.251 0.749 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.375 14.857 -11.347 25.522 hybrid contribution -0.597 1.984 0.712 2.191 sum -17.972 16.842 -10.635 26.828 Atomic orbital electron populations 1.23435 0.90670 1.07222 1.06201 1.87772 1.11240 1.12654 1.98010 1.23526 0.96775 0.93018 1.04026 0.87249 1.21852 1.02110 0.96416 0.94201 1.21588 0.95243 0.94586 1.03719 1.21525 0.96556 1.01453 0.95823 1.21936 1.01477 0.92314 1.00446 1.20982 0.92449 0.94881 0.85778 0.90436 1.45758 1.10417 1.59226 1.17817 1.19907 0.83764 0.79086 0.87418 1.90741 1.54892 1.55903 1.40157 1.20386 0.83114 0.80298 0.88599 1.90694 1.54435 1.57324 1.40938 1.45727 1.10922 1.57281 1.17899 1.20884 0.95320 0.95169 0.84016 1.19303 0.88080 0.97794 0.97315 1.21501 1.47185 0.92239 1.00942 0.93397 1.26942 0.93862 1.00374 1.00516 1.70846 1.37942 1.38540 1.09044 0.83062 0.76727 0.73801 0.73523 1.21292 1.20424 1.19550 1.22883 1.01659 0.92819 1.02856 1.22734 1.03163 1.01974 0.93065 0.88673 0.87852 0.89337 0.89512 0.91185 0.90502 0.89609 0.89863 0.92111 0.89922 0.92529 0.74482 0.74926 0.94538 0.92329 0.92309 0.89684 0.88790 0.89543 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.45 113.37 1.19 -0.09 16 2 S -0.33 -6.76 21.37 -56.49 -1.21 -7.97 16 3 C -0.04 -0.68 2.21 30.59 0.07 -0.61 16 4 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.11 -1.12 5.11 30.59 0.16 -0.97 16 6 C -0.11 -0.89 5.92 30.60 0.18 -0.71 16 7 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 8 C -0.12 -2.03 5.50 30.61 0.17 -1.86 16 9 C 0.16 3.40 1.90 45.01 0.09 3.49 16 10 H 0.08 2.02 7.58 -2.39 -0.02 2.00 16 11 N -0.68 -17.83 4.61 -443.80 -2.04 -19.87 16 12 C 0.52 17.71 7.86 87.27 0.69 18.40 16 13 O -0.54 -20.47 16.14 -3.25 -0.05 -20.53 16 14 C 0.50 19.53 7.89 87.27 0.69 20.22 16 15 O -0.55 -23.40 16.47 -3.24 -0.05 -23.46 16 16 N -0.67 -28.14 5.47 -464.40 -2.54 -30.68 16 17 C 0.17 7.77 5.36 86.38 0.46 8.23 16 18 C -0.02 -1.14 0.91 -52.93 -0.05 -1.19 16 19 C -0.58 -31.19 8.57 25.60 0.22 -30.97 16 20 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 21 C -0.02 -0.89 5.42 84.65 0.46 -0.43 16 22 N -0.93 -54.94 13.61 21.45 0.29 -54.65 16 23 Si 1.11 50.26 29.91 68.60 2.05 52.31 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 C -0.17 -6.63 9.96 30.60 0.30 -6.33 16 28 C -0.17 -7.50 8.96 30.60 0.27 -7.23 16 29 H 0.09 0.78 7.14 -2.39 -0.02 0.76 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.65 6.92 -2.38 -0.02 0.63 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.42 10.29 8.07 -92.70 -0.75 9.54 16 41 H 0.41 17.46 7.80 -92.71 -0.72 16.73 16 42 H 0.04 1.92 7.65 -2.39 -0.02 1.90 16 43 H 0.06 2.51 8.09 -2.39 -0.02 2.49 16 44 H 0.27 15.71 6.08 -92.70 -0.56 15.14 16 45 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 46 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 48 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -67.81 401.98 1.22 -66.60 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -0.30 Total: 39.46 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 5.07 Total: -1.22 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -4.29 Total: -105.20 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -0.11 Total: -43.98 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.05 Total: 52.31 kcal Atomic # 16 Polarization: -6.76 SS G_CDS: -1.21 Total: -7.97 kcal Total: -67.81 1.22 -66.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261539824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.867 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds