Wall clock time and date at job start Tue Mar 31 2020 23:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00202 * 2 1 4 4 C 1.50696 * 109.47416 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00015 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00189 * 180.27554 * 4 3 2 7 7 C 1.46843 * 120.37805 * 359.43818 * 6 4 3 8 8 C 1.53801 * 108.57006 * 123.09853 * 7 6 4 9 9 C 1.53177 * 108.71567 * 51.51262 * 8 7 6 10 10 C 1.52847 * 117.65840 * 89.90765 * 9 8 7 11 11 C 1.52823 * 117.71188 * 158.76334 * 9 8 7 12 12 H 1.08999 * 117.50073 * 144.87700 * 11 9 8 13 13 C 1.50701 * 117.50258 * 359.85966 * 11 9 8 14 14 O 1.21276 * 119.99778 * 263.95087 * 13 11 9 15 15 N 1.34770 * 119.99643 * 83.95367 * 13 11 9 16 16 C 1.46501 * 119.99668 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.47146 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47122 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00049 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99868 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00024 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99725 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47067 * 90.00237 * 22 20 18 24 24 H 1.48496 * 109.46969 * 210.00042 * 22 20 18 25 25 H 1.48500 * 109.47258 * 330.00053 * 22 20 18 26 26 C 1.53187 * 115.07598 * 304.43057 * 9 8 7 27 27 C 1.46834 * 120.38405 * 179.72046 * 6 4 3 28 28 H 1.08999 * 109.46972 * 60.00431 * 1 2 3 29 29 H 1.09002 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47432 * 300.00195 * 1 2 3 31 31 H 1.08998 * 109.47126 * 59.99280 * 3 2 1 32 32 H 1.09004 * 109.46731 * 299.99906 * 3 2 1 33 33 H 1.08999 * 109.58238 * 242.92970 * 7 6 4 34 34 H 1.09000 * 109.58215 * 3.33411 * 7 6 4 35 35 H 1.09004 * 109.71301 * 291.68154 * 8 7 6 36 36 H 1.09000 * 109.51323 * 171.22171 * 8 7 6 37 37 H 1.09002 * 117.50511 * 215.18892 * 10 9 8 38 38 H 1.09002 * 117.50232 * 0.22971 * 10 9 8 39 39 H 0.96998 * 120.00400 * 0.02562 * 15 13 11 40 40 H 1.09001 * 109.47250 * 300.00402 * 16 15 13 41 41 H 1.08999 * 109.46919 * 60.00167 * 16 15 13 42 42 H 1.09002 * 109.46672 * 300.00186 * 17 16 15 43 43 H 1.08999 * 109.47256 * 60.00152 * 17 16 15 44 44 H 0.96999 * 119.99892 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58914 * 295.65995 * 26 9 8 46 46 H 1.09004 * 109.58329 * 175.23139 * 26 9 8 47 47 H 1.09006 * 109.57942 * 356.66983 * 27 6 4 48 48 H 1.09005 * 109.58106 * 116.93632 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 8 4.4404 0.9621 -0.0006 6 7 4.2575 3.1730 0.0049 7 6 3.3926 4.3596 -0.0009 8 6 3.7376 5.2232 1.2241 9 6 5.2506 5.4609 1.2475 10 6 5.7874 6.6894 0.5135 11 6 5.7698 6.6578 2.0433 12 1 6.7252 6.5452 2.5558 13 6 4.7531 7.5204 2.7456 14 8 4.3465 8.5323 2.2152 15 7 4.2958 7.1672 3.9632 16 6 3.3078 8.0061 4.6462 17 6 2.9607 7.3851 6.0008 18 6 1.9440 8.2477 6.7031 19 1 1.5818 9.1489 6.2307 20 6 1.4760 7.8864 7.9487 21 7 1.9166 6.7887 8.5236 22 14 0.2162 8.9560 8.8194 23 1 -1.1514 8.5102 8.4503 24 1 0.3961 8.8363 10.2886 25 1 0.4023 10.3717 8.4117 26 6 6.1076 4.1912 1.2299 27 6 5.7154 3.3482 0.0105 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8031 2.2371 0.8899 32 1 1.8032 2.2370 -0.8900 33 1 3.5623 4.9310 -0.9135 34 1 2.3485 4.0509 0.0501 35 1 3.4346 4.7070 2.1350 36 1 3.2186 6.1792 1.1535 37 1 6.7545 6.5978 0.0191 38 1 5.0634 7.3340 0.0149 39 1 4.6213 6.3580 4.3876 40 1 3.7212 9.0030 4.7991 41 1 2.4069 8.0758 4.0366 42 1 2.5475 6.3881 5.8482 43 1 3.8618 7.3157 6.6102 44 1 1.5871 6.5343 9.3998 45 1 5.9323 3.6194 2.1412 46 1 7.1612 4.4625 1.1631 47 1 6.2002 2.3737 0.0690 48 1 6.0258 3.8564 -0.9025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269218791.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:51 Heat of formation + Delta-G solvation = -57.678526 kcal Electronic energy + Delta-G solvation = -27317.023929 eV Core-core repulsion = 23498.480318 eV Total energy + Delta-G solvation = -3818.543611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82812 -39.69961 -37.94241 -35.60554 -34.84506 -32.86635 -32.23006 -30.73116 -29.85436 -29.46498 -28.88035 -25.45814 -24.16622 -23.81354 -23.34681 -20.97009 -20.67093 -19.75027 -18.64032 -17.61169 -17.00392 -16.78205 -16.37399 -16.06596 -15.77889 -15.37925 -15.17898 -14.68347 -14.55462 -14.47174 -14.14112 -14.03246 -13.90299 -13.84231 -13.55417 -13.18694 -12.86259 -12.77400 -12.68573 -12.39264 -12.36499 -12.15966 -11.92160 -11.54361 -11.25972 -11.08620 -11.07009 -10.70321 -10.44546 -10.36813 -10.29405 -10.18545 -10.15006 -9.81284 -9.50952 -9.23874 -8.94183 -8.59601 -8.40739 -7.96232 -6.13644 -4.16887 1.13166 2.20393 2.23982 2.64513 2.81079 3.25733 3.32138 3.35272 3.42427 3.65629 4.01774 4.30676 4.38130 4.40573 4.51331 4.57052 4.68564 4.71855 4.78214 4.79704 4.82428 4.88747 5.07401 5.15437 5.18409 5.23389 5.26536 5.36153 5.38034 5.46121 5.59998 5.63996 5.66577 5.84870 5.92075 5.99069 6.16098 6.27658 6.28545 6.67112 6.86119 6.96253 7.46428 7.55954 7.77830 7.84121 7.96617 8.22784 8.59742 8.89119 9.48265 10.97820 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.002664 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.242561 B =10508.822158 C =12874.396025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.188 6.188 3 C -0.129 4.129 4 C 0.534 3.466 5 O -0.521 6.521 6 N -0.606 5.606 7 C 0.111 3.889 8 C -0.104 4.104 9 C -0.105 4.105 10 C -0.138 4.138 11 C -0.176 4.176 12 H 0.127 0.873 13 C 0.536 3.464 14 O -0.550 6.550 15 N -0.716 5.716 16 C 0.122 3.878 17 C 0.013 3.987 18 C -0.523 4.523 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.097 4.097 27 C 0.117 3.883 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.398 0.602 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 -10.117 -20.339 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.037 5.963 3 C -0.280 4.280 4 C 0.320 3.680 5 O -0.396 6.396 6 N -0.341 5.341 7 C -0.012 4.012 8 C -0.142 4.142 9 C -0.105 4.105 10 C -0.175 4.175 11 C -0.198 4.198 12 H 0.144 0.856 13 C 0.321 3.679 14 O -0.429 6.429 15 N -0.366 5.366 16 C -0.001 4.001 17 C -0.024 4.024 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.724 3.276 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.135 4.135 27 C -0.005 4.005 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.232 0.768 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.818 -10.877 -20.532 23.729 hybrid contribution -1.438 1.470 1.003 2.288 sum 3.380 -9.407 -19.528 21.938 Atomic orbital electron populations 1.23547 0.95564 1.06839 1.05069 1.87497 1.04905 1.05908 1.98020 1.23581 0.97728 0.99490 1.07183 1.19652 0.88958 0.83043 0.76341 1.90741 1.61937 1.38021 1.48945 1.47954 1.07357 1.05305 1.73445 1.21876 0.94233 0.86094 0.99005 1.21674 0.93059 1.00859 0.98578 1.21456 0.95448 0.89677 1.03961 1.23070 1.03112 0.99046 0.92270 1.22419 1.00805 1.00945 0.95584 0.85558 1.19551 0.81549 0.85256 0.81579 1.90673 1.59472 1.26451 1.66313 1.46309 1.44072 1.27986 1.18184 1.21729 0.89484 0.93773 0.95064 1.19312 0.97218 0.96627 0.89235 1.21040 1.23898 1.08906 1.02303 0.92291 1.24996 0.96708 0.95241 0.97301 1.69952 1.43529 1.23587 1.16124 0.86521 0.81525 0.80861 0.78706 1.20546 1.21132 1.19731 1.21576 0.98790 0.94116 0.99027 1.21583 0.79419 1.01453 0.98034 0.90484 0.87701 0.90234 0.86870 0.87207 0.90497 0.89570 0.90298 0.89825 0.88058 0.87703 0.76830 0.92607 0.92643 0.96001 0.95973 0.92804 0.90503 0.90073 0.88572 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 10.76 101.05 1.09 0.19 16 2 S -0.19 -1.91 21.52 -107.50 -2.31 -4.22 16 3 C -0.13 -1.08 4.75 36.00 0.17 -0.90 16 4 C 0.53 5.78 7.71 -10.99 -0.08 5.69 16 5 O -0.52 -7.58 15.24 5.56 0.08 -7.49 16 6 N -0.61 -5.37 2.91 -172.44 -0.50 -5.87 16 7 C 0.11 0.81 6.38 -3.44 -0.02 0.79 16 8 C -0.10 -0.98 5.25 -26.22 -0.14 -1.12 16 9 C -0.10 -0.95 1.94 -154.49 -0.30 -1.25 16 10 C -0.14 -1.28 9.45 -26.79 -0.25 -1.54 16 11 C -0.18 -1.96 5.90 -91.85 -0.54 -2.50 16 12 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 13 C 0.54 8.41 6.09 -10.99 -0.07 8.34 16 14 O -0.55 -10.74 16.61 5.56 0.09 -10.65 16 15 N -0.72 -11.80 5.56 -60.29 -0.33 -12.14 16 16 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 18 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 22 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.10 -0.76 5.83 -26.46 -0.15 -0.92 16 27 C 0.12 0.96 6.44 -3.68 -0.02 0.94 16 28 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.81 7.75 -51.92 -0.40 0.41 16 32 H 0.11 0.66 7.86 -51.92 -0.41 0.25 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.50 5.86 -51.93 -0.30 0.19 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.93 7.36 -51.93 -0.38 0.55 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.12 7.93 -51.93 -0.41 0.70 16 39 H 0.40 5.82 8.47 -40.82 -0.35 5.47 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 47 H 0.10 0.91 6.96 -51.93 -0.36 0.54 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 403.95 15.07 6.09 6.09 Total: -1.00 -33.86 403.95 -10.15 -44.01 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.07 Total: 1.86 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -0.90 Total: -2.62 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.10 Total: -43.01 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.18 Total: -18.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -2.31 Total: -4.22 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.86 -10.15 -44.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269218791.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.672 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds