Wall clock time and date at job start Tue Mar 31 2020 23:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00202 * 2 1 4 4 C 1.50696 * 109.47416 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00015 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00189 * 180.27554 * 4 3 2 7 7 C 1.46843 * 120.37805 * 359.43818 * 6 4 3 8 8 C 1.53801 * 108.57006 * 123.09853 * 7 6 4 9 9 C 1.53177 * 108.71567 * 51.51262 * 8 7 6 10 10 C 1.52847 * 117.65840 * 89.90765 * 9 8 7 11 11 C 1.52823 * 117.71188 * 158.76334 * 9 8 7 12 12 H 1.08999 * 117.50073 * 144.87700 * 11 9 8 13 13 C 1.50701 * 117.50258 * 359.85966 * 11 9 8 14 14 O 1.21276 * 119.99778 * 263.95087 * 13 11 9 15 15 N 1.34770 * 119.99643 * 83.95367 * 13 11 9 16 16 C 1.46501 * 119.99668 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.47146 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47122 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00049 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99868 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00024 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99725 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47067 * 90.00237 * 22 20 18 24 24 H 1.48496 * 109.46969 * 210.00042 * 22 20 18 25 25 H 1.48500 * 109.47258 * 330.00053 * 22 20 18 26 26 C 1.53187 * 115.07598 * 304.43057 * 9 8 7 27 27 C 1.46834 * 120.38405 * 179.72046 * 6 4 3 28 28 H 1.08999 * 109.46972 * 60.00431 * 1 2 3 29 29 H 1.09002 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47432 * 300.00195 * 1 2 3 31 31 H 1.08998 * 109.47126 * 59.99280 * 3 2 1 32 32 H 1.09004 * 109.46731 * 299.99906 * 3 2 1 33 33 H 1.08999 * 109.58238 * 242.92970 * 7 6 4 34 34 H 1.09000 * 109.58215 * 3.33411 * 7 6 4 35 35 H 1.09004 * 109.71301 * 291.68154 * 8 7 6 36 36 H 1.09000 * 109.51323 * 171.22171 * 8 7 6 37 37 H 1.09002 * 117.50511 * 215.18892 * 10 9 8 38 38 H 1.09002 * 117.50232 * 0.22971 * 10 9 8 39 39 H 0.96998 * 120.00400 * 0.02562 * 15 13 11 40 40 H 1.09001 * 109.47250 * 300.00402 * 16 15 13 41 41 H 1.08999 * 109.46919 * 60.00167 * 16 15 13 42 42 H 1.09002 * 109.46672 * 300.00186 * 17 16 15 43 43 H 1.08999 * 109.47256 * 60.00152 * 17 16 15 44 44 H 0.96999 * 119.99892 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58914 * 295.65995 * 26 9 8 46 46 H 1.09004 * 109.58329 * 175.23139 * 26 9 8 47 47 H 1.09006 * 109.57942 * 356.66983 * 27 6 4 48 48 H 1.09005 * 109.58106 * 116.93632 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 8 4.4404 0.9621 -0.0006 6 7 4.2575 3.1730 0.0049 7 6 3.3926 4.3596 -0.0009 8 6 3.7376 5.2232 1.2241 9 6 5.2506 5.4609 1.2475 10 6 5.7874 6.6894 0.5135 11 6 5.7698 6.6578 2.0433 12 1 6.7252 6.5452 2.5558 13 6 4.7531 7.5204 2.7456 14 8 4.3465 8.5323 2.2152 15 7 4.2958 7.1672 3.9632 16 6 3.3078 8.0061 4.6462 17 6 2.9607 7.3851 6.0008 18 6 1.9440 8.2477 6.7031 19 1 1.5818 9.1489 6.2307 20 6 1.4760 7.8864 7.9487 21 7 1.9166 6.7887 8.5236 22 14 0.2162 8.9560 8.8194 23 1 -1.1514 8.5102 8.4503 24 1 0.3961 8.8363 10.2886 25 1 0.4023 10.3717 8.4117 26 6 6.1076 4.1912 1.2299 27 6 5.7154 3.3482 0.0105 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8031 2.2371 0.8899 32 1 1.8032 2.2370 -0.8900 33 1 3.5623 4.9310 -0.9135 34 1 2.3485 4.0509 0.0501 35 1 3.4346 4.7070 2.1350 36 1 3.2186 6.1792 1.1535 37 1 6.7545 6.5978 0.0191 38 1 5.0634 7.3340 0.0149 39 1 4.6213 6.3580 4.3876 40 1 3.7212 9.0030 4.7991 41 1 2.4069 8.0758 4.0366 42 1 2.5475 6.3881 5.8482 43 1 3.8618 7.3157 6.6102 44 1 1.5871 6.5343 9.3998 45 1 5.9323 3.6194 2.1412 46 1 7.1612 4.4625 1.1631 47 1 6.2002 2.3737 0.0690 48 1 6.0258 3.8564 -0.9025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269218791.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:50 Heat of formation + Delta-G solvation = -78.984129 kcal Electronic energy + Delta-G solvation = -27317.947809 eV Core-core repulsion = 23498.480318 eV Total energy + Delta-G solvation = -3819.467491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68715 -40.75719 -38.97942 -36.69409 -36.26909 -34.80096 -32.91885 -31.67110 -31.39398 -30.20830 -29.46302 -27.18255 -24.87325 -24.80740 -24.43225 -22.71884 -21.48632 -20.92684 -19.41608 -18.62517 -18.37283 -17.89067 -17.57381 -16.82071 -16.66213 -16.65432 -16.46457 -16.36991 -15.73205 -15.25106 -15.13159 -14.88007 -14.70296 -14.57198 -14.39593 -14.29272 -14.13608 -14.04614 -13.45144 -13.41089 -13.23985 -13.03335 -12.97503 -12.94891 -12.68798 -12.53606 -12.26103 -12.21809 -11.82123 -11.70253 -11.48562 -11.19856 -11.03970 -11.00539 -10.88430 -10.69777 -10.61786 -10.01494 -9.69215 -8.72215 -8.25354 -6.36059 0.48423 1.40800 1.41381 1.44743 1.52691 1.58698 1.60914 1.96755 2.22209 2.43406 2.70455 3.09502 3.32030 3.54791 3.63970 3.75947 3.84836 3.99859 4.02780 4.10162 4.17183 4.28449 4.35944 4.36386 4.40452 4.47048 4.50940 4.53640 4.56510 4.68438 4.78672 4.83638 4.90271 4.91654 4.92244 4.98520 5.07506 5.20498 5.27360 5.29887 5.48504 5.48824 5.56389 5.77503 6.14751 6.23223 6.63795 6.77496 7.00886 7.28970 7.33611 8.86296 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.002664 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.242561 B =10508.822158 C =12874.396025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.266 6.266 3 C -0.114 4.114 4 C 0.527 3.473 5 O -0.565 6.565 6 N -0.602 5.602 7 C 0.114 3.886 8 C -0.105 4.105 9 C -0.091 4.091 10 C -0.124 4.124 11 C -0.190 4.190 12 H 0.148 0.852 13 C 0.537 3.463 14 O -0.590 6.590 15 N -0.713 5.713 16 C 0.142 3.858 17 C 0.024 3.976 18 C -0.547 4.547 19 H 0.059 0.941 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.266 1.266 26 C -0.089 4.089 27 C 0.115 3.885 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.408 0.592 40 H 0.043 0.957 41 H 0.047 0.953 42 H 0.008 0.992 43 H 0.005 0.995 44 H 0.266 0.734 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.082 0.918 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 -9.517 -21.560 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.042 6.042 3 C -0.265 4.265 4 C 0.314 3.686 5 O -0.444 6.444 6 N -0.335 5.335 7 C -0.008 4.008 8 C -0.143 4.143 9 C -0.092 4.092 10 C -0.161 4.161 11 C -0.210 4.210 12 H 0.166 0.834 13 C 0.325 3.675 14 O -0.471 6.471 15 N -0.363 5.363 16 C 0.018 3.982 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.191 1.191 26 C -0.127 4.127 27 C -0.007 4.007 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.144 0.856 32 H 0.156 0.844 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.149 0.851 38 H 0.110 0.890 39 H 0.243 0.757 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.100 0.900 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.553 -10.269 -21.763 24.491 hybrid contribution -1.355 1.303 1.374 2.329 sum 3.198 -8.965 -20.389 22.501 Atomic orbital electron populations 1.23551 0.91637 1.07707 1.06186 1.87757 1.09337 1.08837 1.98241 1.23554 0.96148 0.97745 1.09036 1.20081 0.89852 0.82963 0.75655 1.90722 1.63100 1.39481 1.51139 1.48045 1.07938 1.05168 1.72319 1.21976 0.94977 0.85268 0.98570 1.21642 0.93344 1.00219 0.99122 1.21485 0.95337 0.89845 1.02525 1.23176 1.04196 0.98095 0.90601 1.22397 1.00224 1.01748 0.96672 0.83423 1.20282 0.81426 0.85048 0.80711 1.90651 1.61005 1.28408 1.67032 1.46152 1.43534 1.27916 1.18713 1.21197 0.90160 0.93384 0.93445 1.19110 0.95778 0.95734 0.90677 1.21463 1.24682 1.09355 1.02999 0.92319 1.25862 0.98668 0.96504 0.98074 1.70058 1.44809 1.25102 1.16598 0.85467 0.79062 0.79196 0.77473 1.19635 1.20631 1.19072 1.21545 0.99846 0.92972 0.98310 1.21668 0.79005 1.00985 0.99048 0.88795 0.86999 0.89578 0.85621 0.84429 0.88674 0.87778 0.91686 0.91558 0.85073 0.88988 0.75660 0.93870 0.93415 0.97369 0.97634 0.92559 0.91777 0.87745 0.89996 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 10.76 113.37 1.22 -0.15 16 2 S -0.27 -5.35 21.52 -56.49 -1.22 -6.57 16 3 C -0.11 -1.74 4.75 71.23 0.34 -1.41 16 4 C 0.53 10.97 7.71 87.66 0.68 11.65 16 5 O -0.57 -16.68 15.24 -3.02 -0.05 -16.72 16 6 N -0.60 -9.60 2.91 -817.87 -2.38 -11.98 16 7 C 0.11 1.41 6.38 86.58 0.55 1.96 16 8 C -0.10 -1.85 5.25 30.92 0.16 -1.69 16 9 C -0.09 -1.46 1.94 -52.17 -0.10 -1.56 16 10 C -0.12 -1.95 9.45 30.55 0.29 -1.67 16 11 C -0.19 -3.85 5.90 -11.59 -0.07 -3.92 16 12 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 13 C 0.54 16.63 6.09 87.66 0.53 17.16 16 14 O -0.59 -23.01 16.61 -3.02 -0.05 -23.06 16 15 N -0.71 -23.61 5.56 -463.06 -2.57 -26.18 16 16 C 0.14 5.92 5.61 86.38 0.48 6.41 16 17 C 0.02 1.21 5.09 29.85 0.15 1.36 16 18 C -0.55 -30.07 9.11 25.60 0.23 -29.84 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 20 C 0.01 0.43 5.46 84.65 0.46 0.89 16 21 N -0.93 -53.80 13.29 21.45 0.28 -53.51 16 22 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C -0.09 -1.18 5.83 30.77 0.18 -1.00 16 27 C 0.11 1.65 6.44 86.43 0.56 2.21 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.13 1.58 7.75 -2.39 -0.02 1.56 16 32 H 0.14 1.29 7.86 -2.39 -0.02 1.27 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 0.92 5.86 -2.39 -0.01 0.90 16 35 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.07 1.43 7.36 -2.39 -0.02 1.41 16 37 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.77 7.93 -2.39 -0.02 1.75 16 39 H 0.41 11.93 8.47 -92.71 -0.79 11.15 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.10 0.95 8.10 -2.38 -0.02 0.93 16 47 H 0.08 1.47 6.96 -2.38 -0.02 1.46 16 48 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -75.40 403.95 1.88 -73.52 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.17 Total: 19.08 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.67 Total: 0.41 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -4.67 Total: -91.68 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.10 Total: -39.79 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.22 Total: -6.57 kcal Total: -75.40 1.88 -73.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269218791.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.462 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds