Wall clock time and date at job start Tue Mar 31 2020 23:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00314 * 2 1 4 4 C 1.47194 * 109.47364 * 179.97438 * 3 2 1 5 5 C 3.40062 * 161.19039 * 0.02562 * 2 1 3 6 6 C 4.78785 * 168.18707 * 0.02562 * 2 1 3 7 7 N 1.46895 * 109.46889 * 234.82634 * 6 5 4 8 8 C 1.46901 * 110.99856 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47135 * 185.10703 * 8 7 6 10 10 N 1.46503 * 110.01794 * 53.35706 * 9 8 7 11 11 C 1.34771 * 120.00241 * 65.02746 * 10 9 8 12 12 O 1.21286 * 120.00046 * 354.93443 * 11 10 9 13 13 C 1.50698 * 120.00419 * 174.92865 * 11 10 9 14 14 S 1.81000 * 109.47529 * 180.02562 * 13 11 10 15 15 C 1.76196 * 100.00083 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00459 * 0.02562 * 15 14 13 17 17 C 1.38802 * 119.99951 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99792 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00126 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46874 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47690 * 119.99582 * 19 17 15 22 22 H 1.48500 * 109.47118 * 240.00121 * 19 17 15 23 23 C 1.54266 * 110.03093 * 291.91512 * 9 8 7 24 24 C 1.54895 * 104.19524 * 217.10490 * 23 9 8 25 25 C 1.54885 * 102.74744 * 37.94090 * 24 23 9 26 26 C 1.53880 * 110.03489 * 174.74714 * 9 8 7 27 27 H 1.08993 * 109.47195 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47263 * 300.00698 * 1 2 3 29 29 H 1.08997 * 109.46535 * 60.00297 * 1 2 3 30 30 H 1.08997 * 109.47395 * 59.99448 * 3 2 1 31 31 H 1.09000 * 109.46926 * 299.99872 * 3 2 1 32 32 H 1.09004 * 109.46856 * 114.83077 * 6 5 4 33 33 H 1.08996 * 109.47000 * 354.82944 * 6 5 4 34 34 H 1.00900 * 111.00316 * 303.95991 * 7 6 5 35 35 H 1.08992 * 109.47231 * 65.10765 * 8 7 6 36 36 H 1.09001 * 109.46897 * 305.09957 * 8 7 6 37 37 H 0.97005 * 119.99864 * 245.02683 * 10 9 8 38 38 H 1.09000 * 109.47110 * 300.00328 * 13 11 10 39 39 H 1.09001 * 109.46892 * 59.99671 * 13 11 10 40 40 H 0.97004 * 120.00043 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.48778 * 335.78535 * 23 9 8 42 42 H 1.09000 * 110.48910 * 98.43048 * 23 9 8 43 43 H 1.08998 * 110.75398 * 279.62742 * 24 23 9 44 44 H 1.08996 * 110.75337 * 156.25762 * 24 23 9 45 45 H 1.08992 * 110.48739 * 203.37519 * 25 24 23 46 46 H 1.09004 * 110.48308 * 80.73443 * 25 24 23 47 47 H 1.08993 * 110.03373 * 238.56595 * 26 9 8 48 48 H 1.08997 * 110.02505 * 359.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4777 1.1892 0.0006 5 6 4.6481 1.0964 0.0005 6 6 6.1155 0.9802 0.0004 7 7 6.6666 1.7368 1.1325 8 6 8.1323 1.6438 1.1641 9 6 8.6601 2.3345 2.4232 10 7 7.9915 1.7940 3.6094 11 6 8.1745 0.5049 3.9575 12 8 8.8176 -0.2316 3.2399 13 6 7.5803 -0.0214 5.2385 14 16 7.9992 -1.7725 5.4232 15 6 7.2016 -2.1179 6.9559 16 1 6.6623 -1.3373 7.4721 17 6 7.2663 -3.3932 7.5001 18 7 7.9231 -4.3446 6.8708 19 14 6.4202 -3.7595 9.1246 20 1 5.7549 -2.5296 9.6246 21 1 5.4056 -4.8254 8.9251 22 1 7.4278 -4.2146 10.1160 23 6 8.4241 3.8561 2.3296 24 6 9.6816 4.4768 2.9874 25 6 10.8164 3.5374 2.5091 26 6 10.1812 2.1318 2.5374 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 6.5117 1.3817 -0.9323 33 1 6.3968 -0.0688 0.0930 34 1 6.3662 2.6996 1.1045 35 1 8.5465 2.1313 0.2817 36 1 8.4297 0.5952 1.1733 37 1 7.4170 2.3639 4.1443 38 1 7.9822 0.5390 6.0826 39 1 6.4966 0.0924 5.2099 40 1 7.9680 -5.2359 7.2509 41 1 8.3459 4.1666 1.2877 42 1 7.5269 4.1377 2.8809 43 1 9.5977 4.4591 4.0740 44 1 9.8439 5.4928 2.6278 45 1 11.6650 3.5863 3.1912 46 1 11.1245 3.7964 1.4961 47 1 10.4220 1.6322 3.4757 48 1 10.5433 1.5410 1.6960 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269529107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:14 Heat of formation + Delta-G solvation = -35.822231 kcal Electronic energy + Delta-G solvation = -26783.152698 eV Core-core repulsion = 22965.556847 eV Total energy + Delta-G solvation = -3817.595851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.18613 -38.20996 -37.57423 -36.21520 -33.51611 -32.94065 -32.35799 -30.24201 -29.00078 -28.77799 -27.64043 -26.25224 -25.39969 -24.94255 -23.25632 -21.04404 -20.69029 -19.11820 -17.73283 -17.69382 -16.77580 -16.49557 -16.23754 -16.19326 -15.86195 -15.32462 -14.93683 -14.74701 -14.73932 -14.45867 -14.20618 -13.76938 -13.41178 -13.26376 -13.15520 -13.02068 -12.74631 -12.54066 -12.49141 -12.05788 -11.82061 -11.53246 -11.30732 -11.24990 -11.12847 -11.01871 -10.94253 -10.85337 -10.69089 -10.66976 -10.52076 -10.21670 -9.76444 -9.72172 -9.09751 -9.00774 -8.66524 -8.47700 -8.13023 -6.39915 -6.15051 -3.83685 2.26170 2.49223 3.15908 3.25834 3.31574 3.33251 3.39449 3.61263 3.85248 4.17024 4.27509 4.29616 4.39042 4.51952 4.71052 4.85323 4.98721 5.03610 5.07625 5.13316 5.18051 5.20146 5.26175 5.31325 5.34107 5.38361 5.39345 5.43646 5.48670 5.57579 5.61393 5.67325 5.75361 5.81476 5.90818 5.93839 6.03407 6.06142 6.21209 6.27954 6.32430 6.76415 6.81132 6.93772 7.25732 7.46854 7.66739 7.95949 8.42424 8.85145 9.30596 10.92438 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.005682 B = 0.003525 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4926.741271 B = 7942.241256 C =12048.250970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.181 3.819 4 C -0.189 4.189 5 C -0.137 4.137 6 C 0.171 3.829 7 N -0.675 5.675 8 C 0.051 3.949 9 C 0.185 3.815 10 N -0.715 5.715 11 C 0.541 3.459 12 O -0.519 6.519 13 C -0.152 4.152 14 S -0.060 6.060 15 C -0.533 4.533 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.917 3.083 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.122 4.122 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.337 0.663 35 H 0.035 0.965 36 H 0.099 0.901 37 H 0.395 0.605 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.267 0.733 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 20.467 -14.634 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.106 3.894 4 C -0.191 4.191 5 C -0.138 4.138 6 C 0.043 3.957 7 N -0.305 5.305 8 C -0.079 4.079 9 C 0.097 3.903 10 N -0.368 5.368 11 C 0.328 3.672 12 O -0.394 6.394 13 C -0.303 4.303 14 S 0.167 5.833 15 C -0.681 4.681 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.744 3.256 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.163 4.163 26 C -0.161 4.161 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.154 0.846 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.229 0.771 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.513 18.360 -15.379 24.372 hybrid contribution -1.671 1.615 1.413 2.719 sum -6.185 19.974 -13.967 25.145 Atomic orbital electron populations 1.22791 0.80283 1.03324 1.00108 1.88013 1.20067 1.26845 1.95465 1.19021 0.83769 0.85475 1.01157 1.21613 0.92788 1.03249 1.01429 1.22203 0.93416 0.97497 1.00700 1.18874 0.83473 1.00908 0.92425 1.60260 1.09551 1.17004 1.43711 1.22542 0.86300 1.03574 0.95491 1.20813 0.92128 0.92002 0.85327 1.45921 1.50919 1.11717 1.28254 1.20063 0.79496 0.81028 0.86644 1.90642 1.39906 1.56270 1.52581 1.23521 1.03654 1.06138 0.97006 1.85321 1.70440 0.98239 1.29317 1.22924 1.38711 0.98955 1.07539 0.91016 1.24978 0.95357 0.95148 0.98134 1.70031 1.39608 1.02429 1.38304 0.86142 0.79061 0.78398 0.82046 1.19648 1.20602 1.20633 1.22671 0.98881 0.93498 1.01399 1.22493 0.94537 0.98425 1.00639 1.22392 0.97925 0.94939 1.01040 1.22465 0.93062 0.96713 1.03821 0.89173 0.93654 0.93895 0.90786 0.91168 0.92952 0.87910 0.84558 0.94733 0.88321 0.77096 0.89688 0.89490 0.92344 0.90739 0.90781 0.91203 0.91596 0.91542 0.91788 0.90383 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.59 10.66 -35.23 -0.38 -4.97 16 3 C 0.18 1.81 6.41 34.37 0.22 2.03 16 4 C -0.19 -2.45 13.73 -37.12 -0.51 -2.96 16 5 C -0.14 -1.81 13.60 -37.12 -0.50 -2.31 16 6 C 0.17 1.99 6.16 -6.61 -0.04 1.94 16 7 N -0.67 -7.84 6.15 -116.89 -0.72 -8.56 16 8 C 0.05 0.60 4.10 -3.82 -0.02 0.58 16 9 C 0.18 2.08 0.69 -130.70 -0.09 1.99 16 10 N -0.71 -9.64 4.79 -46.57 -0.22 -9.86 16 11 C 0.54 10.10 6.89 -10.99 -0.08 10.02 16 12 O -0.52 -11.33 13.16 5.55 0.07 -11.25 16 13 C -0.15 -3.19 6.16 36.00 0.22 -2.97 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.53 -15.57 9.50 30.94 0.29 -15.27 16 16 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 18 N -0.87 -26.66 13.22 55.49 0.73 -25.93 16 19 Si 0.92 21.90 29.55 -169.99 -5.02 16.87 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.13 -1.02 5.33 -25.07 -0.13 -1.15 16 24 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 25 C -0.13 -1.14 6.83 -25.08 -0.17 -1.31 16 26 C -0.12 -1.47 5.23 -25.61 -0.13 -1.60 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.34 3.28 8.08 -39.29 -0.32 2.97 16 35 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 36 H 0.10 1.51 6.59 -51.93 -0.34 1.17 16 37 H 0.40 4.49 8.23 -40.82 -0.34 4.15 16 38 H 0.08 1.66 8.14 -51.92 -0.42 1.23 16 39 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 0.52 7.75 -51.93 -0.40 0.12 16 42 H 0.07 0.55 7.70 -51.93 -0.40 0.15 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 1.17 7.00 -51.93 -0.36 0.81 16 48 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 LS Contribution 410.45 15.07 6.19 6.19 Total: -1.00 -35.99 410.45 -9.67 -45.66 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.02 Total: 4.52 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -0.09 Total: -8.79 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.21 Total: -44.35 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.30 Total: -16.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.99 -9.67 -45.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269529107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.835 kcal (2) G-P(sol) polarization free energy of solvation -35.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds