Wall clock time and date at job start Tue Mar 31 2020 23:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00314 * 2 1 4 4 C 1.47194 * 109.47364 * 179.97438 * 3 2 1 5 5 C 3.40062 * 161.19039 * 0.02562 * 2 1 3 6 6 C 4.78785 * 168.18707 * 0.02562 * 2 1 3 7 7 N 1.46895 * 109.46889 * 234.82634 * 6 5 4 8 8 C 1.46901 * 110.99856 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47135 * 185.10703 * 8 7 6 10 10 N 1.46503 * 110.01794 * 53.35706 * 9 8 7 11 11 C 1.34771 * 120.00241 * 65.02746 * 10 9 8 12 12 O 1.21286 * 120.00046 * 354.93443 * 11 10 9 13 13 C 1.50698 * 120.00419 * 174.92865 * 11 10 9 14 14 S 1.81000 * 109.47529 * 180.02562 * 13 11 10 15 15 C 1.76196 * 100.00083 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00459 * 0.02562 * 15 14 13 17 17 C 1.38802 * 119.99951 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99792 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00126 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46874 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47690 * 119.99582 * 19 17 15 22 22 H 1.48500 * 109.47118 * 240.00121 * 19 17 15 23 23 C 1.54266 * 110.03093 * 291.91512 * 9 8 7 24 24 C 1.54895 * 104.19524 * 217.10490 * 23 9 8 25 25 C 1.54885 * 102.74744 * 37.94090 * 24 23 9 26 26 C 1.53880 * 110.03489 * 174.74714 * 9 8 7 27 27 H 1.08993 * 109.47195 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47263 * 300.00698 * 1 2 3 29 29 H 1.08997 * 109.46535 * 60.00297 * 1 2 3 30 30 H 1.08997 * 109.47395 * 59.99448 * 3 2 1 31 31 H 1.09000 * 109.46926 * 299.99872 * 3 2 1 32 32 H 1.09004 * 109.46856 * 114.83077 * 6 5 4 33 33 H 1.08996 * 109.47000 * 354.82944 * 6 5 4 34 34 H 1.00900 * 111.00316 * 303.95991 * 7 6 5 35 35 H 1.08992 * 109.47231 * 65.10765 * 8 7 6 36 36 H 1.09001 * 109.46897 * 305.09957 * 8 7 6 37 37 H 0.97005 * 119.99864 * 245.02683 * 10 9 8 38 38 H 1.09000 * 109.47110 * 300.00328 * 13 11 10 39 39 H 1.09001 * 109.46892 * 59.99671 * 13 11 10 40 40 H 0.97004 * 120.00043 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.48778 * 335.78535 * 23 9 8 42 42 H 1.09000 * 110.48910 * 98.43048 * 23 9 8 43 43 H 1.08998 * 110.75398 * 279.62742 * 24 23 9 44 44 H 1.08996 * 110.75337 * 156.25762 * 24 23 9 45 45 H 1.08992 * 110.48739 * 203.37519 * 25 24 23 46 46 H 1.09004 * 110.48308 * 80.73443 * 25 24 23 47 47 H 1.08993 * 110.03373 * 238.56595 * 26 9 8 48 48 H 1.08997 * 110.02505 * 359.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4777 1.1892 0.0006 5 6 4.6481 1.0964 0.0005 6 6 6.1155 0.9802 0.0004 7 7 6.6666 1.7368 1.1325 8 6 8.1323 1.6438 1.1641 9 6 8.6601 2.3345 2.4232 10 7 7.9915 1.7940 3.6094 11 6 8.1745 0.5049 3.9575 12 8 8.8176 -0.2316 3.2399 13 6 7.5803 -0.0214 5.2385 14 16 7.9992 -1.7725 5.4232 15 6 7.2016 -2.1179 6.9559 16 1 6.6623 -1.3373 7.4721 17 6 7.2663 -3.3932 7.5001 18 7 7.9231 -4.3446 6.8708 19 14 6.4202 -3.7595 9.1246 20 1 5.7549 -2.5296 9.6246 21 1 5.4056 -4.8254 8.9251 22 1 7.4278 -4.2146 10.1160 23 6 8.4241 3.8561 2.3296 24 6 9.6816 4.4768 2.9874 25 6 10.8164 3.5374 2.5091 26 6 10.1812 2.1318 2.5374 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 6.5117 1.3817 -0.9323 33 1 6.3968 -0.0688 0.0930 34 1 6.3662 2.6996 1.1045 35 1 8.5465 2.1313 0.2817 36 1 8.4297 0.5952 1.1733 37 1 7.4170 2.3639 4.1443 38 1 7.9822 0.5390 6.0826 39 1 6.4966 0.0924 5.2099 40 1 7.9680 -5.2359 7.2509 41 1 8.3459 4.1666 1.2877 42 1 7.5269 4.1377 2.8809 43 1 9.5977 4.4591 4.0740 44 1 9.8439 5.4928 2.6278 45 1 11.6650 3.5863 3.1912 46 1 11.1245 3.7964 1.4961 47 1 10.4220 1.6322 3.4757 48 1 10.5433 1.5410 1.6960 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269529107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:13 Heat of formation + Delta-G solvation = -61.993972 kcal Electronic energy + Delta-G solvation = -26784.287590 eV Core-core repulsion = 22965.556847 eV Total energy + Delta-G solvation = -3818.730742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32872 -38.96913 -38.82523 -37.11217 -34.60969 -34.53377 -34.05317 -31.41616 -30.01177 -29.73698 -28.61385 -27.64222 -26.97334 -25.77082 -24.17559 -22.21993 -21.57128 -20.25982 -19.76809 -18.59894 -17.65734 -17.58110 -17.36954 -16.93901 -16.88158 -16.75530 -16.42877 -16.19399 -15.89024 -15.59483 -15.47978 -14.90866 -14.64507 -14.43923 -14.24603 -13.96216 -13.85521 -13.70916 -13.46882 -13.34063 -13.14928 -12.92358 -12.70403 -12.52824 -12.47588 -12.18363 -11.96712 -11.92770 -11.73320 -11.67340 -11.42248 -11.36440 -11.16219 -11.15431 -10.61396 -10.52055 -10.24786 -9.88423 -9.39686 -8.63622 -8.34409 -6.11149 1.28677 1.33395 1.40436 1.48004 1.54415 1.60243 1.81342 2.27374 2.42669 2.81411 2.99378 3.32992 3.34665 3.48624 3.56865 3.71278 3.95119 4.08609 4.21739 4.28309 4.32990 4.34187 4.38836 4.44274 4.47270 4.52541 4.53654 4.56305 4.59294 4.61287 4.69656 4.75773 4.79937 4.86723 4.93673 4.96875 5.11567 5.14276 5.27150 5.35018 5.41679 5.49920 5.75581 5.89023 6.14137 6.20042 6.45502 6.51869 6.71013 7.06800 7.45611 8.75081 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.005682 B = 0.003525 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4926.741271 B = 7942.241256 C =12048.250970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.176 3.824 4 C -0.200 4.200 5 C -0.164 4.164 6 C 0.174 3.826 7 N -0.684 5.684 8 C 0.057 3.943 9 C 0.180 3.820 10 N -0.692 5.692 11 C 0.542 3.458 12 O -0.557 6.557 13 C -0.130 4.130 14 S -0.146 6.146 15 C -0.547 4.547 16 H 0.079 0.921 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.272 1.272 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.124 4.124 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.351 0.649 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.409 0.591 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.041 0.959 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.338 23.790 -14.452 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C 0.101 3.899 4 C -0.202 4.202 5 C -0.165 4.165 6 C 0.047 3.953 7 N -0.317 5.317 8 C -0.073 4.073 9 C 0.094 3.906 10 N -0.344 5.344 11 C 0.327 3.673 12 O -0.435 6.435 13 C -0.281 4.281 14 S 0.081 5.919 15 C -0.695 4.695 16 H 0.097 0.903 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.197 1.197 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.163 4.163 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.171 0.829 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.246 0.754 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.060 0.940 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.179 21.750 -15.205 27.247 hybrid contribution -1.161 0.642 1.268 1.835 sum -7.339 22.392 -13.936 27.377 Atomic orbital electron populations 1.22991 0.78244 1.04069 1.01705 1.87947 1.22438 1.28147 1.95809 1.19329 0.82064 0.85241 1.03304 1.22497 0.94036 1.02713 1.00916 1.22626 0.94149 0.98140 1.01541 1.18815 0.83071 0.99809 0.93645 1.60148 1.09323 1.18011 1.44172 1.22386 0.86654 1.01421 0.96799 1.21081 0.91261 0.94454 0.83835 1.45720 1.50090 1.09810 1.28802 1.19726 0.79305 0.82531 0.85693 1.90641 1.41748 1.57728 1.53396 1.23374 1.04404 1.01099 0.99235 1.85471 1.71464 1.04902 1.30088 1.23241 1.38897 0.99667 1.07669 0.90308 1.26124 0.95877 0.94738 1.02428 1.70191 1.41082 1.03026 1.40462 0.84916 0.77907 0.78652 0.76533 1.18141 1.19892 1.19712 1.22667 0.99613 0.89938 1.03140 1.22495 0.93502 0.99224 1.00376 1.22379 0.98213 0.92994 1.02172 1.22435 0.94107 0.98401 1.01354 0.88976 0.92477 0.91822 0.89079 0.88312 0.90334 0.90316 0.82914 0.92017 0.92483 0.75443 0.88000 0.88494 0.92023 0.88516 0.89330 0.91748 0.89173 0.91796 0.90073 0.93990 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -9.77 10.66 -148.98 -1.59 -11.36 16 3 C 0.18 3.23 6.41 70.17 0.45 3.68 16 4 C -0.20 -5.05 13.73 31.12 0.43 -4.63 16 5 C -0.16 -4.27 13.60 31.13 0.42 -3.85 16 6 C 0.17 4.04 6.16 84.50 0.52 4.56 16 7 N -0.68 -15.20 6.15 -523.74 -3.22 -18.42 16 8 C 0.06 1.31 4.10 86.30 0.35 1.67 16 9 C 0.18 3.84 0.69 4.33 0.00 3.85 16 10 N -0.69 -18.14 4.79 -419.64 -2.01 -20.15 16 11 C 0.54 20.70 6.89 87.66 0.60 21.31 16 12 O -0.56 -25.68 13.16 -3.05 -0.04 -25.72 16 13 C -0.13 -5.51 6.16 71.24 0.44 -5.07 16 14 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 15 C -0.55 -32.48 9.50 67.95 0.65 -31.84 16 16 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 17 C 0.01 0.76 5.49 84.86 0.47 1.23 16 18 N -0.91 -57.44 13.22 21.65 0.29 -57.16 16 19 Si 1.00 45.00 29.55 68.60 2.03 47.03 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 C -0.12 -1.45 5.33 31.67 0.17 -1.28 16 24 C -0.12 -1.47 6.91 31.89 0.22 -1.25 16 25 C -0.12 -1.94 6.83 31.67 0.22 -1.73 16 26 C -0.12 -3.00 5.23 31.32 0.16 -2.83 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.35 5.98 8.08 -89.69 -0.73 5.25 16 35 H 0.06 1.08 8.00 -2.39 -0.02 1.06 16 36 H 0.06 1.83 6.59 -2.39 -0.02 1.82 16 37 H 0.41 8.46 8.23 -92.70 -0.76 7.70 16 38 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 39 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.10 0.88 7.75 -2.39 -0.02 0.86 16 42 H 0.09 0.92 7.70 -2.39 -0.02 0.90 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 47 H 0.04 1.31 7.00 -2.39 -0.02 1.30 16 48 H 0.06 1.56 7.67 -2.39 -0.02 1.54 16 Total: -1.00 -82.99 410.45 0.12 -82.87 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.52 Total: 27.12 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 6.35 Total: -14.60 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.95 Total: -95.73 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.63 Total: -37.08 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -82.99 0.12 -82.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269529107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.878 kcal (2) G-P(sol) polarization free energy of solvation -82.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds