Wall clock time and date at job start Tue Mar 31 2020 23:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 114.00310 * 2 1 4 4 C 1.47195 * 109.46986 * 180.02562 * 3 2 1 5 5 C 3.40061 * 161.19005 * 0.02562 * 2 1 3 6 6 C 4.78788 * 168.18695 * 0.02562 * 2 1 3 7 7 N 1.46897 * 109.47064 * 137.40328 * 6 5 4 8 8 C 1.46894 * 110.99880 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47203 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47463 * 179.97438 * 9 8 7 11 11 H 1.09004 * 110.88361 * 57.42398 * 10 9 8 12 12 C 1.55151 * 111.04050 * 181.33005 * 10 9 8 13 13 C 1.54338 * 103.02507 * 153.39563 * 12 10 9 14 14 N 1.47021 * 107.26155 * 338.14263 * 13 12 10 15 15 C 1.34781 * 125.64992 * 178.84864 * 14 13 12 16 16 O 1.21274 * 120.00344 * 179.69253 * 15 14 13 17 17 C 1.50701 * 119.99423 * 359.69048 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.47422 * 108.70588 * 358.58342 * 14 13 12 28 28 H 1.08995 * 109.47334 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47031 * 300.00165 * 1 2 3 30 30 H 1.09006 * 109.47061 * 59.99460 * 1 2 3 31 31 H 1.09000 * 109.47013 * 59.99998 * 3 2 1 32 32 H 1.09000 * 109.46744 * 300.00158 * 3 2 1 33 33 H 1.09000 * 109.47161 * 17.40506 * 6 5 4 34 34 H 1.08997 * 109.46701 * 257.40530 * 6 5 4 35 35 H 1.00899 * 111.00112 * 56.04267 * 7 6 5 36 36 H 1.08998 * 109.47695 * 60.00279 * 8 7 6 37 37 H 1.09000 * 109.46947 * 299.99801 * 8 7 6 38 38 H 1.09007 * 109.47218 * 59.99505 * 9 8 7 39 39 H 1.08997 * 109.47161 * 300.00147 * 9 8 7 40 40 H 1.09003 * 110.72492 * 271.95627 * 12 10 9 41 41 H 1.09006 * 110.72061 * 35.22626 * 12 10 9 42 42 H 1.08996 * 109.99183 * 218.66499 * 13 12 10 43 43 H 1.08998 * 109.77679 * 97.49207 * 13 12 10 44 44 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 45 45 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 46 46 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 47 47 H 1.09003 * 110.37421 * 143.19407 * 27 14 13 48 48 H 1.09003 * 110.36944 * 265.40667 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.4776 1.1892 -0.0006 5 6 4.6480 1.0965 0.0005 6 6 6.1154 0.9802 0.0004 7 7 6.6841 1.9578 -0.9370 8 6 8.1501 1.8702 -0.9640 9 6 8.7047 2.9016 -1.9487 10 6 10.2317 2.8107 -1.9764 11 1 10.5563 1.8053 -2.2447 12 6 10.8351 3.8658 -2.9408 13 6 12.2424 4.1076 -2.3553 14 7 12.2043 3.6969 -0.9441 15 6 13.2443 3.7318 -0.0875 16 8 13.0961 3.3722 1.0612 17 6 14.5913 4.2176 -0.5572 18 16 15.7706 4.1448 0.8139 19 6 17.2152 4.7512 0.0075 20 1 17.1744 5.0317 -1.0345 21 6 18.4055 4.8685 0.7118 22 7 18.4554 4.5263 1.9818 23 14 19.9372 5.5108 -0.1433 24 1 20.6875 4.3739 -0.7346 25 1 19.5441 6.4569 -1.2182 26 1 20.7974 6.2121 0.8432 27 6 10.8386 3.2466 -0.6194 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.4002 -0.0261 -0.3070 34 1 6.4953 1.1749 1.0034 35 1 6.3815 2.8935 -0.7113 36 1 8.4487 0.8701 -1.2783 37 1 8.5445 2.0708 0.0322 38 1 8.4062 3.9016 -1.6340 39 1 8.3103 2.7014 -2.9449 40 1 10.8993 3.4699 -3.9543 41 1 10.2500 4.7854 -2.9212 42 1 12.4993 5.1645 -2.4270 43 1 12.9748 3.5083 -2.8961 44 1 14.5046 5.2460 -0.9081 45 1 14.9423 3.5841 -1.3718 46 1 19.2874 4.6079 2.4738 47 1 10.8711 2.4030 0.0701 48 1 10.2615 4.0652 -0.1893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272358430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:20 Heat of formation + Delta-G solvation = -34.267124 kcal Electronic energy + Delta-G solvation = -24960.180064 eV Core-core repulsion = 21142.651648 eV Total energy + Delta-G solvation = -3817.528416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.90444 -38.49322 -37.88502 -36.84255 -34.21972 -32.80533 -32.42571 -30.47054 -29.59603 -28.89802 -27.36391 -26.21700 -25.48964 -24.79605 -23.57390 -22.09241 -20.51884 -19.31792 -17.92355 -17.70441 -17.01149 -16.62057 -16.56256 -16.49659 -16.35073 -15.56749 -15.12456 -15.06638 -14.80158 -14.46919 -14.05275 -13.92407 -13.85833 -13.46120 -13.41249 -13.19238 -12.85665 -12.70523 -12.58953 -12.47212 -12.28569 -12.11193 -11.79813 -11.55956 -11.23585 -11.06356 -11.02313 -10.92303 -10.88147 -10.78341 -10.73880 -10.51922 -10.02913 -9.81153 -9.40144 -9.06334 -8.92077 -8.48613 -8.23072 -6.50020 -6.21398 -3.92052 1.94825 2.22428 2.93276 3.07329 3.22479 3.25577 3.27279 3.30777 3.62788 3.88251 4.00195 4.19935 4.24336 4.43756 4.49708 4.61352 4.73117 4.79908 4.84195 4.85376 4.91708 4.98771 5.04186 5.11144 5.12620 5.13738 5.14154 5.17623 5.25343 5.31837 5.39366 5.50669 5.57015 5.65345 5.68095 5.72758 5.79094 5.85383 5.97175 6.06192 6.14990 6.44074 6.45218 6.51850 6.85031 7.16030 7.59744 7.69096 8.35518 8.56849 9.23859 10.86101 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033832 B = 0.001303 C = 0.001263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.419599 B =21487.480141 C =22160.962289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.179 3.821 4 C -0.184 4.184 5 C -0.143 4.143 6 C 0.168 3.832 7 N -0.688 5.688 8 C 0.054 3.946 9 C -0.103 4.103 10 C -0.101 4.101 11 H 0.087 0.913 12 C -0.125 4.125 13 C 0.101 3.899 14 N -0.627 5.627 15 C 0.548 3.452 16 O -0.517 6.517 17 C -0.147 4.147 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.272 1.272 26 H -0.282 1.282 27 C 0.112 3.888 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.345 0.655 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.076 0.924 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.071 -4.520 -10.246 33.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.104 3.896 4 C -0.186 4.186 5 C -0.144 4.144 6 C 0.040 3.960 7 N -0.319 5.319 8 C -0.075 4.075 9 C -0.141 4.141 10 C -0.121 4.121 11 H 0.106 0.894 12 C -0.163 4.163 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.336 3.664 16 O -0.391 6.391 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.197 1.197 26 H -0.207 1.207 27 C -0.011 4.011 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -32.047 -5.638 -8.852 33.721 hybrid contribution 1.177 1.501 -1.070 2.187 sum -30.869 -4.137 -9.921 32.687 Atomic orbital electron populations 1.22804 0.80093 1.03320 1.00335 1.87973 1.20242 1.26952 1.95530 1.19063 0.83677 0.85418 1.01490 1.21650 0.92835 1.02408 1.01670 1.22186 0.93371 0.98101 1.00752 1.18888 0.83446 0.98265 0.95353 1.60463 1.09150 1.09446 1.52874 1.22079 0.86029 1.00680 0.98688 1.21472 0.93223 0.98988 1.00460 1.22366 0.94649 0.99939 0.95099 0.89423 1.22682 0.95093 0.99377 0.99135 1.22000 0.97840 1.00411 0.81988 1.48509 1.09867 1.66775 1.11311 1.20029 0.84430 0.77252 0.84653 1.90702 1.83639 1.46998 1.17803 1.23506 0.95986 1.03642 1.06566 1.85393 1.01695 1.85682 1.10723 1.22860 0.95819 1.50312 0.99330 0.90941 1.24989 0.98604 0.95047 0.94882 1.70022 1.27383 1.45028 1.07877 0.86170 0.81377 0.78921 0.79053 1.20255 1.19681 1.20736 1.22230 0.82715 0.99511 0.96684 0.89174 0.93664 0.93627 0.90848 0.90670 0.88160 0.92272 0.83732 0.90372 0.94269 0.91560 0.90365 0.89914 0.90480 0.91315 0.91302 0.89338 0.89316 0.92183 0.90582 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -3.17 10.66 -35.23 -0.38 -3.55 16 3 C 0.18 1.19 6.41 34.37 0.22 1.41 16 4 C -0.18 -1.72 13.73 -37.13 -0.51 -2.23 16 5 C -0.14 -1.33 13.60 -37.12 -0.50 -1.84 16 6 C 0.17 1.24 6.16 -6.61 -0.04 1.20 16 7 N -0.69 -4.97 6.47 -116.89 -0.76 -5.73 16 8 C 0.05 0.37 5.54 -3.83 -0.02 0.35 16 9 C -0.10 -0.66 4.99 -26.73 -0.13 -0.79 16 10 C -0.10 -0.80 3.07 -88.47 -0.27 -1.07 16 11 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.12 -0.94 6.42 -24.89 -0.16 -1.10 16 13 C 0.10 1.08 6.49 -3.06 -0.02 1.06 16 14 N -0.63 -9.13 3.33 -170.51 -0.57 -9.70 16 15 C 0.55 10.79 7.87 -10.98 -0.09 10.70 16 16 O -0.52 -12.19 16.12 5.56 0.09 -12.10 16 17 C -0.15 -3.06 5.35 36.01 0.19 -2.87 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 23 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.11 1.30 5.56 -2.53 -0.01 1.28 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.04 0.13 8.14 -51.92 -0.42 -0.29 16 30 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.34 2.27 8.71 -39.29 -0.34 1.93 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.29 7.45 -51.93 -0.39 -0.10 16 38 H 0.07 0.41 8.10 -51.92 -0.42 -0.01 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.08 0.98 7.96 -51.93 -0.41 0.56 16 48 H 0.06 0.71 8.01 -51.93 -0.42 0.29 16 LS Contribution 418.96 15.07 6.31 6.31 Total: -1.00 -36.51 418.96 -10.12 -46.63 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -8.28 Total: -3.12 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.04 Total: -5.69 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.59 Total: -41.00 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.29 Total: -15.65 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.51 -10.12 -46.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272358430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.362 kcal (2) G-P(sol) polarization free energy of solvation -36.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds