Wall clock time and date at job start Tue Mar 31 2020 23:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 119.99627 * 2 1 4 4 O 1.21280 * 119.99756 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00207 * 359.97438 * 3 2 1 6 6 S 1.81000 * 109.47207 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00068 * 179.97438 * 6 5 3 8 8 H 1.07996 * 120.00193 * 0.02562 * 7 6 5 9 9 C 1.38797 * 119.99572 * 179.97438 * 7 6 5 10 10 N 1.31624 * 120.00404 * 359.97438 * 9 7 6 11 11 Si 1.86812 * 119.99651 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46902 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47007 * 120.00033 * 11 9 7 14 14 H 1.48490 * 109.46993 * 239.99993 * 11 9 7 15 15 C 1.46501 * 120.00144 * 179.97438 * 2 1 3 16 16 H 1.09000 * 109.46760 * 180.30151 * 15 2 1 17 17 C 1.52999 * 109.47167 * 60.29607 * 15 2 1 18 18 N 1.46500 * 109.46936 * 54.99796 * 17 15 2 19 19 C 1.34775 * 119.99395 * 179.97438 * 18 17 15 20 20 O 1.21277 * 120.00357 * 0.02562 * 19 18 17 21 21 C 1.50712 * 119.99529 * 180.02562 * 19 18 17 22 22 C 1.53005 * 109.46788 * 180.02562 * 21 19 18 23 23 C 1.52999 * 117.49716 * 243.62291 * 22 21 19 24 24 C 1.52995 * 117.49362 * 175.00003 * 22 21 19 25 25 C 1.52997 * 109.46896 * 300.29447 * 15 2 1 26 26 C 1.53001 * 117.50012 * 246.70705 * 25 15 2 27 27 C 1.53000 * 117.49885 * 178.05287 * 25 15 2 28 28 H 1.08994 * 109.47520 * 274.63068 * 1 2 3 29 29 H 1.09002 * 109.47223 * 34.63282 * 1 2 3 30 30 H 1.09003 * 109.46644 * 154.62950 * 1 2 3 31 31 H 1.09007 * 109.46688 * 299.99681 * 5 3 2 32 32 H 1.08995 * 109.47157 * 59.99974 * 5 3 2 33 33 H 0.97003 * 119.99855 * 179.97438 * 10 9 7 34 34 H 1.08997 * 109.46974 * 175.00138 * 17 15 2 35 35 H 1.09005 * 109.46729 * 294.99863 * 17 15 2 36 36 H 0.97000 * 120.00025 * 0.02562 * 18 17 15 37 37 H 1.08996 * 109.46954 * 300.00362 * 21 19 18 38 38 H 1.09002 * 109.46703 * 60.00695 * 21 19 18 39 39 H 1.08995 * 115.54660 * 29.33219 * 22 21 19 40 40 H 1.08998 * 117.49803 * 0.02562 * 23 22 21 41 41 H 1.08999 * 117.49742 * 145.02448 * 23 22 21 42 42 H 1.09000 * 117.49814 * 214.97853 * 24 22 21 43 43 H 1.08998 * 117.50034 * 0.02562 * 24 22 21 44 44 H 1.09000 * 115.55442 * 32.38272 * 25 15 2 45 45 H 1.08990 * 117.50043 * 0.02562 * 26 25 15 46 46 H 1.09010 * 117.49810 * 145.01981 * 26 25 15 47 47 H 1.09009 * 117.49923 * 214.98254 * 27 25 15 48 48 H 1.09001 * 117.49554 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5615 3.8481 -0.0012 7 6 1.4413 5.2082 -0.0026 8 1 0.3761 5.0305 -0.0024 9 6 1.9281 6.5080 -0.0028 10 7 3.2264 6.7247 -0.0015 11 14 0.7406 7.9501 -0.0036 12 1 -0.6548 7.4421 -0.0032 13 1 0.9660 8.7776 1.2087 14 1 0.9666 8.7768 -1.2162 15 6 2.1976 -1.2687 0.0006 16 1 3.2692 -1.0695 0.0059 17 6 1.8336 -2.0684 -1.2520 18 7 2.0816 -1.2511 -2.4423 19 6 1.8318 -1.7526 -3.6680 20 8 1.4012 -2.8803 -3.7856 21 6 2.0875 -0.9121 -4.8926 22 6 1.7234 -1.7118 -6.1451 23 6 2.8509 -2.0414 -7.1254 24 6 1.8018 -0.9897 -7.4917 25 6 1.8224 -2.0736 1.2464 26 6 2.9124 -2.3000 2.2960 27 6 2.4516 -3.4588 1.4086 28 1 -0.3634 0.0830 1.0242 29 1 -0.3634 0.8456 -0.5840 30 1 -0.3633 -0.9286 -0.4403 31 1 0.7590 2.5298 -0.8909 32 1 0.7583 2.5303 0.8891 33 1 3.5665 7.6331 -0.0021 34 1 2.4435 -2.9705 -1.2971 35 1 0.7796 -2.3439 -1.2136 36 1 2.4264 -0.3493 -2.3482 37 1 1.4776 -0.0099 -4.8478 38 1 3.1415 -0.6367 -4.9305 39 1 0.9348 -2.4532 -6.0167 40 1 3.8522 -1.6890 -6.8777 41 1 2.8044 -3.0000 -7.6421 42 1 1.0651 -1.2564 -8.2494 43 1 2.1132 0.0548 -7.4853 44 1 0.8008 -1.9401 1.6025 45 1 3.8966 -1.8751 2.0992 46 1 2.6078 -2.3156 3.3426 47 1 1.8440 -4.2365 1.8715 48 1 3.1325 -3.7968 0.6274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280950511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:23 Heat of formation + Delta-G solvation = -25.935894 kcal Electronic energy + Delta-G solvation = -27376.111708 eV Core-core repulsion = 23558.944561 eV Total energy + Delta-G solvation = -3817.167147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42153 -39.51114 -37.78910 -37.20025 -35.41013 -34.25871 -32.47851 -30.95481 -29.59432 -28.06542 -26.78319 -25.53505 -24.01784 -22.57682 -22.49862 -21.26245 -20.76584 -20.06746 -19.30400 -17.77904 -17.41521 -17.09079 -16.47766 -15.97232 -15.64647 -15.58219 -15.15247 -14.85494 -14.80036 -14.32279 -14.21369 -14.04915 -13.52719 -13.45524 -13.09869 -12.95901 -12.64403 -12.47499 -12.38092 -12.27238 -11.94977 -11.72977 -11.70503 -11.62977 -11.42868 -11.11079 -11.06906 -10.81889 -10.65440 -10.57379 -10.31007 -10.22717 -9.88480 -9.84390 -9.48133 -9.17901 -9.12137 -8.66959 -8.29004 -6.56152 -6.26817 -3.97764 2.55261 2.73617 2.90489 3.01607 3.18019 3.22127 3.27448 3.49548 3.61314 3.63558 4.15310 4.37673 4.49302 4.52438 4.62871 4.73002 4.75655 4.83932 4.89630 4.93926 5.00715 5.08782 5.10334 5.19117 5.25942 5.34121 5.41059 5.41896 5.44803 5.46712 5.50106 5.51657 5.66443 5.68603 5.70874 5.76478 5.82733 5.91534 5.93968 6.01297 6.06786 6.09268 6.27689 6.53783 7.36685 7.40232 7.55250 8.11350 8.30417 8.41432 9.19032 10.80539 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007930 B = 0.003247 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.088358 B = 8621.170657 C =11361.781282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.616 5.616 3 C 0.533 3.467 4 O -0.515 6.515 5 C -0.150 4.150 6 S -0.060 6.060 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.159 3.841 16 H 0.109 0.891 17 C 0.115 3.885 18 N -0.726 5.726 19 C 0.518 3.482 20 O -0.545 6.545 21 C -0.114 4.114 22 C -0.139 4.139 23 C -0.180 4.180 24 C -0.181 4.181 25 C -0.163 4.163 26 C -0.170 4.170 27 C -0.174 4.174 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.405 0.595 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -19.192 -4.959 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.352 5.352 3 C 0.322 3.678 4 O -0.389 6.389 5 C -0.301 4.301 6 S 0.166 5.834 7 C -0.683 4.683 8 H 0.091 0.909 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.744 3.256 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.205 1.205 15 C 0.055 3.945 16 H 0.127 0.873 17 C -0.010 4.010 18 N -0.379 5.379 19 C 0.305 3.695 20 O -0.422 6.422 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.216 4.216 24 C -0.218 4.218 25 C -0.183 4.183 26 C -0.207 4.207 27 C -0.211 4.211 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.241 0.759 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.128 0.872 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.229 -19.854 -5.036 20.736 hybrid contribution -2.132 1.432 0.214 2.577 sum -5.361 -18.422 -4.823 19.783 Atomic orbital electron populations 1.21749 0.79619 1.03140 1.01936 1.47874 1.06873 1.04976 1.75440 1.20420 0.87965 0.84553 0.74906 1.90703 1.13627 1.86685 1.47906 1.23562 1.04599 0.97097 1.04825 1.85384 1.07948 0.93332 1.96719 1.22886 0.94314 0.92168 1.58956 0.90906 1.24985 0.95660 0.98385 0.94488 1.70020 1.11724 1.21606 1.46864 0.86129 0.80367 0.81142 0.77940 1.19606 1.20563 1.20538 1.20793 0.98907 0.82919 0.91871 0.87278 1.21644 1.01933 0.93952 0.83462 1.45989 1.67370 1.18958 1.05557 1.20581 0.76996 0.87455 0.84484 1.90669 1.45313 1.19554 1.86706 1.21251 1.03923 0.98822 0.91375 1.22023 1.02318 1.02374 0.88998 1.23037 0.94783 1.00167 1.03661 1.23013 1.02528 0.98005 0.98219 1.22483 0.99099 0.98704 0.97969 1.23037 0.99179 1.02085 0.96369 1.22979 1.03786 0.91163 1.03210 0.92561 0.90732 0.91115 0.89237 0.89205 0.92211 0.90471 0.91070 0.75932 0.88194 0.88571 0.86513 0.88785 0.88864 0.88722 0.88557 0.87197 0.88315 0.88648 0.88531 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 9.06 59.85 0.54 1.31 16 2 N -0.62 -7.63 2.25 -173.93 -0.39 -8.02 16 3 C 0.53 9.07 7.38 -10.99 -0.08 8.99 16 4 O -0.52 -10.56 15.19 5.56 0.08 -10.47 16 5 C -0.15 -2.84 4.77 36.00 0.17 -2.67 16 6 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 7 C -0.54 -14.73 9.50 30.94 0.29 -14.44 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 10 N -0.87 -25.48 13.22 55.49 0.73 -24.75 16 11 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.16 1.76 2.43 -67.93 -0.17 1.60 16 16 H 0.11 1.44 6.64 -51.93 -0.35 1.10 16 17 C 0.11 1.20 4.68 -4.04 -0.02 1.19 16 18 N -0.73 -8.20 5.39 -60.29 -0.32 -8.53 16 19 C 0.52 6.26 7.83 -10.98 -0.09 6.18 16 20 O -0.54 -8.20 15.56 5.56 0.09 -8.11 16 21 C -0.11 -1.12 5.98 -27.87 -0.17 -1.29 16 22 C -0.14 -1.37 5.41 -90.62 -0.49 -1.86 16 23 C -0.18 -1.58 10.18 -26.73 -0.27 -1.85 16 24 C -0.18 -1.51 10.25 -26.73 -0.27 -1.78 16 25 C -0.16 -1.53 5.24 -90.62 -0.48 -2.01 16 26 C -0.17 -1.60 10.18 -26.70 -0.27 -1.87 16 27 C -0.17 -1.39 9.77 -26.70 -0.26 -1.65 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.73 6.63 -51.93 -0.34 0.39 16 30 H 0.07 0.58 6.55 -51.93 -0.34 0.24 16 31 H 0.09 1.55 7.41 -51.91 -0.38 1.16 16 32 H 0.09 1.61 8.11 -51.92 -0.42 1.19 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.08 0.81 7.35 -51.93 -0.38 0.43 16 35 H 0.07 0.74 6.87 -51.93 -0.36 0.38 16 36 H 0.41 4.78 7.86 -40.82 -0.32 4.46 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.85 7.88 -51.93 -0.41 0.45 16 39 H 0.12 1.32 7.30 -51.93 -0.38 0.94 16 40 H 0.09 0.78 8.03 -51.93 -0.42 0.37 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.11 0.97 7.46 -51.93 -0.39 0.59 16 45 H 0.10 1.03 8.04 -51.93 -0.42 0.61 16 46 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 47 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 48 H 0.10 0.75 7.54 -51.93 -0.39 0.36 16 LS Contribution 408.00 15.07 6.15 6.15 Total: -1.00 -33.55 408.00 -10.35 -43.90 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.80 Total: 5.94 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.65 Total: -8.20 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.02 Total: -41.30 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.55 -10.35 -43.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280950511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.962 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds