Wall clock time and date at job start Tue Mar 31 2020 23:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34771 * 120.00431 * 2 1 4 4 O 1.21284 * 120.00353 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99952 * 359.97438 * 3 2 1 6 6 S 1.80990 * 109.47384 * 180.02562 * 5 3 2 7 7 C 1.76199 * 100.00278 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99888 * 359.97438 * 7 6 5 9 9 C 1.38797 * 120.00452 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00292 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99660 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99524 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99704 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99697 * 11 9 7 15 15 C 1.46504 * 119.99898 * 179.97438 * 2 1 3 16 16 H 1.09003 * 110.88742 * 177.57361 * 15 2 1 17 17 C 1.55157 * 111.00396 * 301.45691 * 15 2 1 18 18 C 1.54323 * 102.94171 * 153.57678 * 17 15 2 19 19 N 1.47018 * 107.27468 * 337.80379 * 18 17 15 20 20 C 1.34772 * 125.65085 * 178.98993 * 19 18 17 21 21 O 1.21283 * 119.99913 * 179.97438 * 20 19 18 22 22 C 1.50695 * 120.00242 * 359.97349 * 20 19 18 23 23 C 1.53000 * 109.47528 * 180.02562 * 22 20 19 24 24 C 1.52991 * 109.47385 * 179.97438 * 23 22 20 25 25 C 1.53003 * 117.50225 * 243.62107 * 24 23 22 26 26 C 1.53005 * 60.00078 * 252.51045 * 25 24 23 27 27 C 1.47430 * 108.69996 * 358.94170 * 19 18 17 28 28 H 1.08997 * 109.47000 * 90.00273 * 1 2 3 29 29 H 1.08999 * 109.47159 * 210.00333 * 1 2 3 30 30 H 1.08996 * 109.46926 * 330.00108 * 1 2 3 31 31 H 1.09001 * 109.47050 * 59.99941 * 5 3 2 32 32 H 1.08999 * 109.47014 * 300.00996 * 5 3 2 33 33 H 0.96997 * 119.99773 * 180.02562 * 10 9 7 34 34 H 1.09002 * 110.71678 * 271.93302 * 17 15 2 35 35 H 1.08995 * 110.72726 * 35.21005 * 17 15 2 36 36 H 1.09000 * 109.88280 * 97.22689 * 18 17 15 37 37 H 1.09007 * 109.88070 * 218.38831 * 18 17 15 38 38 H 1.08999 * 109.46878 * 300.00176 * 22 20 19 39 39 H 1.09002 * 109.47188 * 60.00113 * 22 20 19 40 40 H 1.09004 * 109.47035 * 300.00614 * 23 22 20 41 41 H 1.09002 * 109.46960 * 59.99770 * 23 22 20 42 42 H 1.09003 * 115.54961 * 29.33387 * 24 23 22 43 43 H 1.09005 * 117.49276 * 0.02562 * 25 24 23 44 44 H 1.08996 * 117.49933 * 145.01803 * 25 24 23 45 45 H 1.09000 * 117.49948 * 252.50850 * 26 25 24 46 46 H 1.08996 * 117.49867 * 107.48646 * 26 25 24 47 47 H 1.08994 * 110.36984 * 265.28950 * 27 19 18 48 48 H 1.09000 * 110.36781 * 142.96512 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5616 3.8479 -0.0012 7 6 1.4417 5.2082 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9284 6.5080 -0.0009 10 7 1.0916 7.5242 -0.0002 11 14 3.7709 6.8153 -0.0015 12 1 4.2598 6.8964 1.3984 13 1 4.0595 8.0929 -0.7014 14 1 4.4584 5.7009 -0.7021 15 6 2.1975 -1.2688 0.0006 16 1 3.2730 -1.0966 -0.0426 17 6 1.8209 -2.1278 1.2365 18 6 2.0894 -3.5679 0.7513 19 7 2.0418 -3.5496 -0.7180 20 6 2.2459 -4.6104 -1.5238 21 8 2.1813 -4.4787 -2.7277 22 6 2.5543 -5.9602 -0.9290 23 6 2.7411 -6.9820 -2.0524 24 6 3.0549 -8.3523 -1.4485 25 6 4.4221 -8.9649 -1.7590 26 6 3.1611 -9.5395 -2.4078 27 6 1.7327 -2.1787 -1.1638 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.7585 2.5302 0.8892 32 1 0.7591 2.5298 -0.8907 33 1 1.4319 8.4325 -0.0005 34 1 2.4584 -1.8819 2.0858 35 1 0.7694 -1.9966 1.4916 36 1 3.0739 -3.8945 1.0863 37 1 1.3225 -4.2387 1.1387 38 1 3.4692 -5.8972 -0.3399 39 1 1.7299 -6.2716 -0.2876 40 1 1.8264 -7.0451 -2.6419 41 1 3.5657 -6.6705 -2.6935 42 1 2.6317 -8.5391 -0.4615 43 1 5.0981 -8.3914 -2.3932 44 1 4.8988 -9.5547 -0.9761 45 1 2.8083 -10.5074 -2.0517 46 1 3.0075 -9.3443 -3.4691 47 1 0.6613 -2.0660 -1.3289 48 1 2.2845 -1.9422 -2.0735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283376607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:05 Heat of formation + Delta-G solvation = -46.447794 kcal Electronic energy + Delta-G solvation = -26519.079079 eV Core-core repulsion = 22701.022469 eV Total energy + Delta-G solvation = -3818.056610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.70526 -39.58256 -38.12284 -37.46355 -35.12987 -32.77668 -32.46071 -31.44860 -29.82134 -28.49538 -27.06238 -25.68836 -25.42736 -23.36732 -22.78018 -21.62000 -20.82692 -19.59918 -19.28030 -17.83593 -17.44449 -17.29034 -16.44084 -16.09609 -15.72293 -15.59770 -15.45653 -15.01971 -14.82460 -14.42452 -14.02738 -13.88589 -13.67199 -13.38812 -13.30858 -13.10559 -12.83623 -12.80445 -12.53118 -12.42545 -12.18847 -12.11701 -12.01016 -11.78171 -11.70801 -11.59766 -11.28226 -11.07490 -11.02703 -10.75242 -10.63262 -10.32129 -10.11459 -9.88197 -9.58610 -9.07602 -9.02413 -8.70098 -8.52554 -6.95182 -6.31071 -4.03322 2.30839 2.39253 2.75785 2.81036 3.15568 3.31365 3.36136 3.48978 3.55455 3.97843 4.16723 4.26330 4.31065 4.39764 4.48955 4.52283 4.53566 4.61424 4.75913 4.78150 4.85841 4.90289 4.94749 5.01076 5.08049 5.13678 5.15909 5.22551 5.24411 5.30316 5.40511 5.47480 5.48071 5.53573 5.60387 5.64926 5.66428 5.71411 5.73613 5.80104 5.86006 5.95058 5.95938 6.43312 7.13452 7.29901 7.83893 7.91844 8.31487 8.39108 9.15100 10.78083 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.001755 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.443016 B =15948.003717 C =16219.502944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.613 5.613 3 C 0.535 3.465 4 O -0.515 6.515 5 C -0.121 4.121 6 S -0.143 6.143 7 C -0.522 4.522 8 H 0.088 0.912 9 C 0.096 3.904 10 N -0.880 5.880 11 Si 0.856 3.144 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.132 3.868 16 H 0.118 0.882 17 C -0.146 4.146 18 C 0.103 3.897 19 N -0.620 5.620 20 C 0.528 3.472 21 O -0.538 6.538 22 C -0.131 4.131 23 C -0.075 4.075 24 C -0.155 4.155 25 C -0.182 4.182 26 C -0.181 4.181 27 C 0.096 3.904 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.271 0.729 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.073 0.927 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 -32.144 2.360 32.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.348 5.348 3 C 0.323 3.677 4 O -0.389 6.389 5 C -0.271 4.271 6 S 0.084 5.916 7 C -0.669 4.669 8 H 0.106 0.894 9 C -0.112 4.112 10 N -0.516 5.516 11 Si 0.681 3.319 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.159 1.159 15 C 0.027 3.973 16 H 0.136 0.864 17 C -0.184 4.184 18 C -0.020 4.020 19 N -0.355 5.355 20 C 0.317 3.683 21 O -0.415 6.415 22 C -0.171 4.171 23 C -0.112 4.112 24 C -0.173 4.173 25 C -0.219 4.219 26 C -0.218 4.218 27 C -0.027 4.027 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.092 0.908 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.061 -31.923 1.651 31.984 hybrid contribution -0.943 0.427 0.188 1.052 sum 0.117 -31.497 1.839 31.551 Atomic orbital electron populations 1.21844 0.79334 1.03501 1.02263 1.47655 1.06904 1.04781 1.75488 1.20372 0.87931 0.84539 0.74833 1.90698 1.13729 1.86707 1.47782 1.23313 1.03120 0.94911 1.05757 1.84810 1.11892 0.97522 1.97424 1.22297 0.94839 0.90868 1.58906 0.89369 1.24704 0.98525 0.94865 0.93139 1.69936 1.34804 0.98892 1.47976 0.86742 0.85357 0.79866 0.79927 1.19208 1.19911 1.15931 1.22082 0.99032 0.82806 0.93424 0.86444 1.23060 1.03483 0.93043 0.98854 1.22051 1.02094 0.97948 0.79925 1.48430 1.70886 1.08997 1.07206 1.20458 0.76219 0.85243 0.86372 1.90732 1.51276 1.84970 1.14491 1.21631 1.03846 0.91626 0.99999 1.20936 1.03166 0.90721 0.96424 1.22341 1.00917 0.93936 1.00130 1.23065 0.90961 1.04184 1.03645 1.22967 1.02286 0.97553 0.98958 1.22516 1.01239 0.80575 0.98400 0.92291 0.91056 0.90094 0.88373 0.88333 0.91919 0.89101 0.89736 0.90809 0.90907 0.88693 0.88845 0.90751 0.90934 0.87727 0.88681 0.88895 0.88843 0.88688 0.90844 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 8.91 59.85 0.53 1.19 16 2 N -0.61 -7.58 2.91 -171.48 -0.50 -8.08 16 3 C 0.54 9.22 7.69 -10.99 -0.08 9.14 16 4 O -0.52 -10.76 15.24 5.55 0.08 -10.68 16 5 C -0.12 -2.26 4.71 36.01 0.17 -2.09 16 6 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 7 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 8 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 9 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 10 N -0.88 -26.30 13.97 55.49 0.78 -25.53 16 11 Si 0.86 21.62 27.74 -169.99 -4.71 16.91 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 15 C 0.13 1.42 3.46 -65.78 -0.23 1.19 16 16 H 0.12 1.53 7.01 -51.93 -0.36 1.17 16 17 C -0.15 -1.05 6.51 -24.90 -0.16 -1.21 16 18 C 0.10 0.62 6.49 -3.07 -0.02 0.60 16 19 N -0.62 -5.67 3.33 -170.52 -0.57 -6.23 16 20 C 0.53 5.44 7.85 -10.99 -0.09 5.35 16 21 O -0.54 -7.80 16.24 5.55 0.09 -7.71 16 22 C -0.13 -0.84 4.85 -27.89 -0.14 -0.98 16 23 C -0.07 -0.54 4.79 -26.74 -0.13 -0.67 16 24 C -0.16 -0.89 5.74 -90.62 -0.52 -1.41 16 25 C -0.18 -1.02 10.18 -26.73 -0.27 -1.30 16 26 C -0.18 -1.02 10.25 -26.73 -0.27 -1.30 16 27 C 0.10 1.01 6.47 -2.52 -0.02 1.00 16 28 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.07 0.46 6.32 -51.93 -0.33 0.14 16 30 H 0.08 0.74 6.44 -51.93 -0.33 0.40 16 31 H 0.10 1.69 7.40 -51.92 -0.38 1.30 16 32 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.53 6.31 -51.93 -0.33 0.20 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.07 0.62 7.83 -51.93 -0.41 0.22 16 42 H 0.10 0.49 8.07 -51.93 -0.42 0.07 16 43 H 0.09 0.56 8.03 -51.93 -0.42 0.14 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.72 7.04 -51.93 -0.37 0.35 16 48 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -35.56 400.62 -9.78 -45.34 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.99 Total: -2.19 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.01 Total: -2.30 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.29 Total: -39.84 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.56 -9.78 -45.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283376607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.107 kcal (2) G-P(sol) polarization free energy of solvation -35.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds