Wall clock time and date at job start Tue Mar 31 2020 23:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34771 * 120.00431 * 2 1 4 4 O 1.21284 * 120.00353 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99952 * 359.97438 * 3 2 1 6 6 S 1.80990 * 109.47384 * 180.02562 * 5 3 2 7 7 C 1.76199 * 100.00278 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99888 * 359.97438 * 7 6 5 9 9 C 1.38797 * 120.00452 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00292 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99660 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99524 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99704 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99697 * 11 9 7 15 15 C 1.46504 * 119.99898 * 179.97438 * 2 1 3 16 16 H 1.09003 * 110.88742 * 177.57361 * 15 2 1 17 17 C 1.55157 * 111.00396 * 301.45691 * 15 2 1 18 18 C 1.54323 * 102.94171 * 153.57678 * 17 15 2 19 19 N 1.47018 * 107.27468 * 337.80379 * 18 17 15 20 20 C 1.34772 * 125.65085 * 178.98993 * 19 18 17 21 21 O 1.21283 * 119.99913 * 179.97438 * 20 19 18 22 22 C 1.50695 * 120.00242 * 359.97349 * 20 19 18 23 23 C 1.53000 * 109.47528 * 180.02562 * 22 20 19 24 24 C 1.52991 * 109.47385 * 179.97438 * 23 22 20 25 25 C 1.53003 * 117.50225 * 243.62107 * 24 23 22 26 26 C 1.53005 * 60.00078 * 252.51045 * 25 24 23 27 27 C 1.47430 * 108.69996 * 358.94170 * 19 18 17 28 28 H 1.08997 * 109.47000 * 90.00273 * 1 2 3 29 29 H 1.08999 * 109.47159 * 210.00333 * 1 2 3 30 30 H 1.08996 * 109.46926 * 330.00108 * 1 2 3 31 31 H 1.09001 * 109.47050 * 59.99941 * 5 3 2 32 32 H 1.08999 * 109.47014 * 300.00996 * 5 3 2 33 33 H 0.96997 * 119.99773 * 180.02562 * 10 9 7 34 34 H 1.09002 * 110.71678 * 271.93302 * 17 15 2 35 35 H 1.08995 * 110.72726 * 35.21005 * 17 15 2 36 36 H 1.09000 * 109.88280 * 97.22689 * 18 17 15 37 37 H 1.09007 * 109.88070 * 218.38831 * 18 17 15 38 38 H 1.08999 * 109.46878 * 300.00176 * 22 20 19 39 39 H 1.09002 * 109.47188 * 60.00113 * 22 20 19 40 40 H 1.09004 * 109.47035 * 300.00614 * 23 22 20 41 41 H 1.09002 * 109.46960 * 59.99770 * 23 22 20 42 42 H 1.09003 * 115.54961 * 29.33387 * 24 23 22 43 43 H 1.09005 * 117.49276 * 0.02562 * 25 24 23 44 44 H 1.08996 * 117.49933 * 145.01803 * 25 24 23 45 45 H 1.09000 * 117.49948 * 252.50850 * 26 25 24 46 46 H 1.08996 * 117.49867 * 107.48646 * 26 25 24 47 47 H 1.08994 * 110.36984 * 265.28950 * 27 19 18 48 48 H 1.09000 * 110.36781 * 142.96512 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5616 3.8479 -0.0012 7 6 1.4417 5.2082 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9284 6.5080 -0.0009 10 7 1.0916 7.5242 -0.0002 11 14 3.7709 6.8153 -0.0015 12 1 4.2598 6.8964 1.3984 13 1 4.0595 8.0929 -0.7014 14 1 4.4584 5.7009 -0.7021 15 6 2.1975 -1.2688 0.0006 16 1 3.2730 -1.0966 -0.0426 17 6 1.8209 -2.1278 1.2365 18 6 2.0894 -3.5679 0.7513 19 7 2.0418 -3.5496 -0.7180 20 6 2.2459 -4.6104 -1.5238 21 8 2.1813 -4.4787 -2.7277 22 6 2.5543 -5.9602 -0.9290 23 6 2.7411 -6.9820 -2.0524 24 6 3.0549 -8.3523 -1.4485 25 6 4.4221 -8.9649 -1.7590 26 6 3.1611 -9.5395 -2.4078 27 6 1.7327 -2.1787 -1.1638 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.7585 2.5302 0.8892 32 1 0.7591 2.5298 -0.8907 33 1 1.4319 8.4325 -0.0005 34 1 2.4584 -1.8819 2.0858 35 1 0.7694 -1.9966 1.4916 36 1 3.0739 -3.8945 1.0863 37 1 1.3225 -4.2387 1.1387 38 1 3.4692 -5.8972 -0.3399 39 1 1.7299 -6.2716 -0.2876 40 1 1.8264 -7.0451 -2.6419 41 1 3.5657 -6.6705 -2.6935 42 1 2.6317 -8.5391 -0.4615 43 1 5.0981 -8.3914 -2.3932 44 1 4.8988 -9.5547 -0.9761 45 1 2.8083 -10.5074 -2.0517 46 1 3.0075 -9.3443 -3.4691 47 1 0.6613 -2.0660 -1.3289 48 1 2.2845 -1.9422 -2.0735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283376607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:04 Heat of formation + Delta-G solvation = -68.894569 kcal Electronic energy + Delta-G solvation = -26520.052444 eV Core-core repulsion = 22701.022469 eV Total energy + Delta-G solvation = -3819.029975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.58860 -40.65190 -38.83634 -38.19290 -36.19686 -34.67502 -33.43152 -32.31692 -30.81231 -29.51509 -27.93919 -27.85284 -26.16061 -24.00872 -23.20074 -22.56698 -21.30423 -20.55437 -20.19408 -19.65064 -18.52512 -18.19050 -17.37146 -17.12216 -16.83934 -16.71416 -16.63411 -16.18477 -15.92644 -15.29136 -15.02662 -14.90217 -14.68345 -14.62017 -14.44632 -14.26250 -13.84391 -13.64831 -13.53931 -13.37912 -13.18784 -13.05317 -13.02107 -12.83039 -12.57231 -12.54027 -12.45236 -12.25824 -12.12511 -11.87914 -11.73268 -11.24188 -11.17442 -11.02827 -10.89988 -10.75978 -10.53212 -9.92136 -9.63206 -9.01069 -8.51966 -6.22979 0.95209 1.30476 1.40155 1.46073 1.50433 1.57908 1.76720 2.18343 2.24596 2.67596 2.86477 2.92135 3.31997 3.41179 3.65186 3.69548 3.80345 3.93965 4.04373 4.07827 4.09144 4.14417 4.19389 4.28495 4.32113 4.39787 4.43425 4.53194 4.60040 4.61828 4.70295 4.77268 4.81587 4.82141 4.86382 5.00206 5.06237 5.07570 5.09193 5.13606 5.17434 5.28591 5.45027 5.49097 5.70396 6.11020 6.15037 6.43736 6.93450 7.01587 7.08602 8.60274 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.001755 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.443016 B =15948.003717 C =16219.502944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.598 5.598 3 C 0.536 3.464 4 O -0.561 6.561 5 C -0.105 4.105 6 S -0.180 6.180 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.048 3.952 10 N -0.916 5.916 11 Si 0.913 3.087 12 H -0.261 1.261 13 H -0.260 1.260 14 H -0.239 1.239 15 C 0.128 3.872 16 H 0.089 0.911 17 C -0.134 4.134 18 C 0.102 3.898 19 N -0.619 5.619 20 C 0.520 3.480 21 O -0.592 6.592 22 C -0.120 4.120 23 C -0.073 4.073 24 C -0.150 4.150 25 C -0.185 4.185 26 C -0.187 4.187 27 C 0.101 3.899 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.277 0.723 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 -34.814 4.455 35.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.331 5.331 3 C 0.323 3.677 4 O -0.439 6.439 5 C -0.256 4.256 6 S 0.047 5.953 7 C -0.675 4.675 8 H 0.082 0.918 9 C -0.158 4.158 10 N -0.554 5.554 11 Si 0.735 3.265 12 H -0.186 1.186 13 H -0.184 1.184 14 H -0.163 1.163 15 C 0.023 3.977 16 H 0.107 0.893 17 C -0.173 4.173 18 C -0.020 4.020 19 N -0.353 5.353 20 C 0.311 3.689 21 O -0.473 6.473 22 C -0.159 4.159 23 C -0.111 4.111 24 C -0.168 4.168 25 C -0.221 4.221 26 C -0.224 4.224 27 C -0.024 4.024 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.143 0.857 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.470 -34.627 3.782 34.836 hybrid contribution -0.895 1.134 -0.498 1.528 sum -0.425 -33.494 3.284 33.657 Atomic orbital electron populations 1.22170 0.76778 1.05404 1.03458 1.47598 1.08392 1.03887 1.73236 1.20066 0.87245 0.85291 0.75073 1.90683 1.15436 1.87342 1.50470 1.23281 1.01726 0.93250 1.07312 1.84753 1.13892 0.99063 1.97581 1.22437 0.94391 0.92417 1.58260 0.91794 1.25526 1.02582 0.94790 0.92900 1.70011 1.36713 0.99520 1.49118 0.85893 0.80391 0.80000 0.80246 1.18555 1.18416 1.16302 1.22126 0.97418 0.82317 0.95875 0.89297 1.23058 1.04711 0.92599 0.96896 1.22316 1.04357 0.97740 0.77539 1.48530 1.70055 1.07949 1.08761 1.21235 0.75209 0.86613 0.85845 1.90710 1.53750 1.85883 1.16960 1.21658 1.05883 0.88630 0.99744 1.20861 1.01524 0.92145 0.96579 1.22343 1.00951 0.92749 1.00792 1.23114 0.90909 1.04243 1.03882 1.23037 1.02527 0.98229 0.98651 1.22345 1.01291 0.81755 0.96990 0.91466 0.87551 0.89892 0.86431 0.87130 0.91377 0.88570 0.87806 0.89191 0.87486 0.86656 0.85716 0.92334 0.93228 0.85668 0.89592 0.87621 0.87624 0.89629 0.89700 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 8.91 127.77 1.14 2.08 16 2 N -0.60 -13.82 2.91 -814.83 -2.37 -16.19 16 3 C 0.54 18.17 7.69 87.66 0.67 18.85 16 4 O -0.56 -23.78 15.24 -3.04 -0.05 -23.82 16 5 C -0.11 -3.87 4.71 71.24 0.34 -3.54 16 6 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 7 C -0.53 -30.42 10.04 67.95 0.68 -29.74 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 9 C 0.05 2.77 5.50 84.86 0.47 3.24 16 10 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 11 Si 0.91 44.90 27.74 68.60 1.90 46.80 16 12 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 14 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 15 C 0.13 2.56 3.46 46.38 0.16 2.72 16 16 H 0.09 2.35 7.01 -2.39 -0.02 2.33 16 17 C -0.13 -1.43 6.51 31.78 0.21 -1.23 16 18 C 0.10 0.80 6.49 86.73 0.56 1.36 16 19 N -0.62 -10.02 3.33 -811.79 -2.70 -12.72 16 20 C 0.52 10.11 7.85 87.66 0.69 10.79 16 21 O -0.59 -17.68 16.24 -3.04 -0.05 -17.72 16 22 C -0.12 -1.22 4.85 29.85 0.14 -1.07 16 23 C -0.07 -1.00 4.79 30.59 0.15 -0.85 16 24 C -0.15 -1.42 5.74 -10.79 -0.06 -1.48 16 25 C -0.18 -1.82 10.18 30.60 0.31 -1.51 16 26 C -0.19 -1.90 10.25 30.60 0.31 -1.59 16 27 C 0.10 2.02 6.47 86.86 0.56 2.58 16 28 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 29 H 0.11 0.89 6.32 -2.39 -0.02 0.87 16 30 H 0.08 1.26 6.44 -2.39 -0.02 1.24 16 31 H 0.12 3.88 7.40 -2.39 -0.02 3.86 16 32 H 0.11 3.81 8.11 -2.40 -0.02 3.79 16 33 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 0.75 6.31 -2.39 -0.02 0.73 16 36 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 38 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 41 H 0.05 0.89 7.83 -2.39 -0.02 0.87 16 42 H 0.13 0.69 8.07 -2.39 -0.02 0.67 16 43 H 0.09 0.99 8.03 -2.38 -0.02 0.97 16 44 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.50 7.04 -2.39 -0.02 1.49 16 48 H 0.05 1.36 8.04 -2.39 -0.02 1.34 16 Total: -1.00 -81.55 400.62 3.23 -78.32 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.90 Total: 9.86 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 6.33 Total: 0.62 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -4.77 Total: -84.00 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.10 Total: -41.55 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -81.55 3.23 -78.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283376607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.428 kcal (2) G-P(sol) polarization free energy of solvation -81.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds