Wall clock time and date at job start Tue Mar 31 2020 22:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35652 * 117.00056 * 2 1 4 4 C 1.38640 * 120.13680 * 0.23148 * 3 2 1 5 5 C 1.38137 * 120.15376 * 180.29832 * 4 3 2 6 6 C 1.38419 * 120.43271 * 359.72116 * 5 4 3 7 7 C 1.38133 * 120.27304 * 0.02562 * 6 5 4 8 8 F 1.35095 * 120.07885 * 179.97438 * 7 6 5 9 9 C 1.39966 * 119.83561 * 359.97438 * 7 6 5 10 10 C 1.47394 * 120.20889 * 180.02562 * 9 7 6 11 11 O 1.21605 * 119.99642 * 90.00587 * 10 9 7 12 12 N 1.34777 * 120.00004 * 269.99580 * 10 9 7 13 13 C 1.46502 * 119.99767 * 180.27711 * 12 10 9 14 14 C 1.52997 * 109.46912 * 179.72968 * 13 12 10 15 15 O 1.42908 * 109.47474 * 65.00072 * 14 13 12 16 16 C 1.42891 * 114.00191 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47187 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.46662 * 65.00372 * 17 16 15 19 19 C 1.46502 * 119.99850 * 270.00072 * 18 17 16 20 20 C 1.36941 * 120.00222 * 89.99963 * 18 17 16 21 21 H 1.07995 * 119.99693 * 22.70604 * 20 18 17 22 22 C 1.38807 * 120.00132 * 202.70335 * 20 18 17 23 23 N 1.31630 * 120.00081 * 11.50850 * 22 20 18 24 24 Si 1.86794 * 120.00217 * 191.50619 * 22 20 18 25 25 H 1.48505 * 109.47125 * 90.00206 * 24 22 20 26 26 H 1.48504 * 109.47091 * 210.00314 * 24 22 20 27 27 H 1.48503 * 109.47283 * 330.00308 * 24 22 20 28 28 H 1.09004 * 109.47080 * 300.00379 * 1 2 3 29 29 H 1.09001 * 109.47164 * 59.99928 * 1 2 3 30 30 H 1.09006 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.07990 * 119.92253 * 0.02562 * 4 3 2 32 32 H 1.07990 * 119.77976 * 179.70171 * 5 4 3 33 33 H 1.08000 * 119.86320 * 179.97438 * 6 5 4 34 34 H 0.96998 * 120.00001 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.46995 * 299.73110 * 13 12 10 36 36 H 1.08993 * 109.47222 * 59.72968 * 13 12 10 37 37 H 1.09000 * 109.46816 * 184.99919 * 14 13 12 38 38 H 1.09001 * 109.47274 * 305.00013 * 14 13 12 39 39 H 1.09008 * 109.47340 * 300.00414 * 16 15 14 40 40 H 1.09007 * 109.47025 * 59.99832 * 16 15 14 41 41 H 1.08996 * 109.47149 * 184.99858 * 17 16 15 42 42 H 1.08997 * 109.47109 * 305.00610 * 17 16 15 43 43 H 1.08990 * 109.47620 * 93.91935 * 19 18 17 44 44 H 1.09001 * 109.46828 * 213.92029 * 19 18 17 45 45 H 1.09001 * 109.47050 * 333.91420 * 19 18 17 46 46 H 0.96991 * 119.99927 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3732 0.0048 5 6 1.9193 3.6042 -0.0014 6 6 3.3010 3.6875 -0.0067 7 6 4.0678 2.5386 -0.0063 8 9 5.4160 2.6245 -0.0120 9 6 3.4446 1.2854 0.0000 10 6 4.2549 0.0541 0.0010 11 8 4.5929 -0.4504 1.0545 12 7 4.6211 -0.5126 -1.1658 13 6 5.4213 -1.7397 -1.1647 14 6 5.6918 -2.1734 -2.6068 15 8 6.5045 -1.1926 -3.2548 16 6 6.8178 -1.5032 -4.6139 17 6 7.6863 -0.3905 -5.2042 18 7 8.9747 -0.3553 -4.5078 19 6 9.1412 0.4820 -3.3173 20 6 10.0234 -1.1051 -4.9697 21 1 10.0473 -1.4220 -6.0018 22 6 11.0557 -1.4577 -4.1113 23 7 10.9255 -1.2728 -2.8146 24 14 12.6295 -2.1947 -4.7963 25 1 13.5916 -1.1068 -5.1061 26 1 13.2253 -3.1111 -3.7910 27 1 12.3227 -2.9522 -6.0362 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2141 2.3178 0.0090 32 1 1.3274 4.5074 -0.0024 33 1 3.7814 4.6547 -0.0119 34 1 4.3517 -0.1100 -2.0061 35 1 6.3681 -1.5555 -0.6570 36 1 4.8773 -2.5278 -0.6443 37 1 6.2102 -3.1322 -2.6066 38 1 4.7463 -2.2716 -3.1401 39 1 7.3597 -2.4482 -4.6550 40 1 5.8957 -1.5879 -5.1891 41 1 7.8515 -0.5823 -6.2644 42 1 7.1813 0.5677 -5.0826 43 1 8.9507 -0.1136 -2.4246 44 1 10.1595 0.8694 -3.2851 45 1 8.4373 1.3134 -3.3564 46 1 11.6467 -1.5195 -2.2148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283376660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:17 Heat of formation + Delta-G solvation = -132.088281 kcal Electronic energy + Delta-G solvation = -29914.282225 eV Core-core repulsion = 25526.298789 eV Total energy + Delta-G solvation = -4387.983436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.13806 -41.59257 -40.29997 -39.05749 -38.21789 -37.23424 -35.77360 -33.45137 -32.68668 -31.01000 -30.80299 -29.37008 -28.25090 -27.82947 -25.38085 -24.81735 -23.42176 -23.27857 -22.15813 -21.88146 -19.70908 -18.78590 -18.69830 -18.20290 -17.76726 -17.51647 -17.11039 -17.04116 -16.81894 -16.49187 -16.43066 -16.06318 -15.81761 -15.67329 -15.36950 -15.24354 -15.07263 -14.69577 -14.15059 -13.94821 -13.74906 -13.44552 -13.40987 -13.16800 -13.05527 -12.82727 -12.73028 -12.55514 -12.51507 -12.35601 -12.33449 -12.03054 -12.02414 -11.79860 -11.69574 -11.20491 -10.62619 -10.41081 -10.26213 -10.03587 -9.42854 -8.74539 -7.77956 -5.27084 -0.17017 0.13805 1.35686 1.45657 1.47645 1.56210 2.01857 2.06506 2.42998 2.52301 2.83110 3.24033 3.34851 3.51797 3.75418 3.83923 3.88942 3.93583 4.03521 4.12427 4.24966 4.37550 4.40764 4.42311 4.48855 4.56305 4.59354 4.66830 4.72293 4.76726 4.83250 4.91882 4.96656 4.98438 5.06355 5.19067 5.23180 5.26284 5.35139 5.58632 5.65518 5.80850 6.21576 6.34143 6.34881 6.44719 7.01620 7.17811 7.91178 8.37798 9.25279 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002587 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.849915 B =10821.042206 C =11324.189316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.183 3.817 4 C -0.209 4.209 5 C -0.017 4.017 6 C -0.189 4.189 7 C 0.141 3.859 8 F -0.146 7.146 9 C -0.230 4.230 10 C 0.571 3.429 11 O -0.581 6.581 12 N -0.697 5.697 13 C 0.128 3.872 14 C 0.056 3.944 15 O -0.396 6.396 16 C 0.051 3.949 17 C 0.145 3.855 18 N -0.613 5.613 19 C 0.197 3.803 20 C -0.261 4.261 21 H 0.077 0.923 22 C -0.059 4.059 23 N -0.939 5.939 24 Si 0.970 3.030 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.264 1.264 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.179 0.821 32 H 0.187 0.813 33 H 0.164 0.836 34 H 0.413 0.587 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.058 0.942 43 H -0.003 1.003 44 H 0.009 0.991 45 H 0.016 0.984 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.394 8.234 2.036 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.135 3.865 4 C -0.228 4.228 5 C -0.035 4.035 6 C -0.208 4.208 7 C 0.121 3.879 8 F -0.125 7.125 9 C -0.235 4.235 10 C 0.357 3.643 11 O -0.462 6.462 12 N -0.347 5.347 13 C 0.005 3.995 14 C -0.020 4.020 15 O -0.316 6.316 16 C -0.028 4.028 17 C 0.019 3.981 18 N -0.336 5.336 19 C 0.052 3.948 20 C -0.391 4.391 21 H 0.095 0.905 22 C -0.254 4.254 23 N -0.586 5.586 24 Si 0.798 3.202 25 H -0.214 1.214 26 H -0.226 1.226 27 H -0.188 1.188 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.196 0.804 32 H 0.205 0.795 33 H 0.182 0.818 34 H 0.249 0.751 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.015 0.985 44 H 0.028 0.972 45 H 0.034 0.966 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -28.839 7.782 2.948 30.016 hybrid contribution 1.556 -0.805 -0.207 1.764 sum -27.284 6.977 2.742 28.295 Atomic orbital electron populations 1.23538 0.74839 1.06044 1.03478 1.86070 1.24803 1.26399 1.87371 1.18715 0.88786 0.86463 0.92492 1.21692 1.02275 0.90511 1.08275 1.21459 0.92526 0.99067 0.90430 1.21376 0.95348 0.97047 1.06980 1.17792 0.76694 0.93414 0.99961 1.91541 1.30429 1.97006 1.93516 1.19074 0.93139 0.92438 1.18845 1.18220 0.78647 0.83765 0.83642 1.90755 1.57363 1.65164 1.32869 1.45816 1.53062 1.27373 1.08488 1.21351 0.94701 0.86847 0.96639 1.22683 0.95394 0.92309 0.91657 1.87986 1.71066 1.45809 1.26702 1.23279 0.98023 0.99468 0.81995 1.21149 0.84866 0.96586 0.95523 1.44106 1.08323 1.50181 1.30999 1.20285 0.95556 0.90415 0.88563 1.19606 0.99032 1.26594 0.93857 0.90530 1.25872 1.03006 1.01124 0.95365 1.70312 1.32391 1.53414 1.02435 0.85224 0.79873 0.77682 0.77394 1.21436 1.22628 1.18820 0.90581 0.89900 0.86774 0.80353 0.79535 0.81849 0.75097 0.93976 0.88795 0.92211 0.89965 0.95817 0.91085 0.90618 0.92358 0.98503 0.97215 0.96599 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -6.67 9.95 -89.67 -0.89 -7.57 16 3 C 0.18 3.77 6.70 22.84 0.15 3.92 16 4 C -0.21 -2.38 9.03 22.34 0.20 -2.17 16 5 C -0.02 -0.17 10.03 22.29 0.22 0.06 16 6 C -0.19 -3.13 10.01 22.29 0.22 -2.91 16 7 C 0.14 3.78 7.29 22.66 0.17 3.95 16 8 F -0.15 -4.95 16.83 44.97 0.76 -4.20 16 9 C -0.23 -6.53 5.64 -19.97 -0.11 -6.64 16 10 C 0.57 20.36 6.43 86.65 0.56 20.92 16 11 O -0.58 -25.62 17.11 -4.05 -0.07 -25.69 16 12 N -0.70 -22.17 5.50 -466.41 -2.57 -24.74 16 13 C 0.13 4.24 6.06 86.38 0.52 4.76 16 14 C 0.06 1.73 6.07 71.98 0.44 2.16 16 15 O -0.40 -15.44 9.84 -148.98 -1.47 -16.91 16 16 C 0.05 1.87 6.28 71.98 0.45 2.32 16 17 C 0.14 5.87 6.12 86.38 0.53 6.40 16 18 N -0.61 -32.28 2.89 -726.96 -2.10 -34.37 16 19 C 0.20 10.88 8.61 127.77 1.10 11.98 16 20 C -0.26 -14.70 9.67 84.03 0.81 -13.89 16 21 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 22 C -0.06 -3.45 5.12 84.86 0.43 -3.02 16 23 N -0.94 -59.18 10.62 21.65 0.23 -58.95 16 24 Si 0.97 46.75 29.57 68.60 2.03 48.78 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 27 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 28 H 0.08 0.36 7.65 -2.38 -0.02 0.34 16 29 H 0.08 0.29 7.67 -2.39 -0.02 0.27 16 30 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.18 0.60 6.29 -2.92 -0.02 0.58 16 32 H 0.19 0.12 8.06 -2.92 -0.02 0.10 16 33 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.41 11.36 8.46 -92.71 -0.78 10.58 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.08 2.78 8.03 -2.39 -0.02 2.76 16 42 H 0.06 2.18 7.87 -2.39 -0.02 2.16 16 43 H 0.00 -0.21 7.43 -2.39 -0.02 -0.23 16 44 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 45 H 0.02 0.77 7.85 -2.39 -0.02 0.75 16 46 H 0.24 15.04 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -85.75 394.18 2.95 -82.80 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.21 Total: 11.78 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 6.81 Total: 29.06 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -4.43 Total: -118.07 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -2.43 Total: -50.16 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.76 Total: -4.20 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -85.75 2.95 -82.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283376660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.284 kcal (2) G-P(sol) polarization free energy of solvation -85.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds