Wall clock time and date at job start Tue Mar 31 2020 22:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35970 * 117.00243 * 2 1 4 4 C 1.38665 * 119.98853 * 359.97438 * 3 2 1 5 5 C 1.38371 * 120.28298 * 180.02562 * 4 3 2 6 6 C 1.37896 * 120.27063 * 359.97438 * 5 4 3 7 7 C 1.39676 * 119.97800 * 0.02562 * 6 5 4 8 8 C 1.47702 * 120.13898 * 180.02562 * 7 6 5 9 9 O 1.21576 * 119.99780 * 226.56248 * 8 7 6 10 10 N 1.34774 * 120.00298 * 46.55480 * 8 7 6 11 11 C 1.46503 * 119.99957 * 355.05515 * 10 8 7 12 12 C 1.46497 * 119.99996 * 175.04945 * 10 8 7 13 13 C 1.53004 * 109.47200 * 90.00298 * 12 10 8 14 14 H 1.09008 * 109.46979 * 59.99813 * 13 12 10 15 15 O 1.42902 * 109.47217 * 300.00062 * 13 12 10 16 16 C 1.53002 * 109.47350 * 179.97438 * 13 12 10 17 17 N 1.46502 * 109.47131 * 185.00317 * 16 13 12 18 18 C 1.46504 * 119.99636 * 270.00013 * 17 16 13 19 19 C 1.36930 * 120.00512 * 89.99630 * 17 16 13 20 20 H 1.08001 * 119.99674 * 330.79968 * 19 17 16 21 21 C 1.38808 * 119.99930 * 150.51472 * 19 17 16 22 22 N 1.31618 * 120.00366 * 0.55152 * 21 19 17 23 23 Si 1.86799 * 119.99871 * 180.55005 * 21 19 17 24 24 H 1.48497 * 109.47350 * 60.00192 * 23 21 19 25 25 H 1.48496 * 109.47263 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47344 * 300.00339 * 23 21 19 27 27 C 1.38770 * 119.99630 * 180.23621 * 3 2 1 28 28 F 1.35100 * 120.13223 * 0.02562 * 27 3 2 29 29 H 1.09004 * 109.46741 * 60.00093 * 1 2 3 30 30 H 1.08997 * 109.46705 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46704 * 300.00615 * 1 2 3 32 32 H 1.07993 * 119.85755 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.86394 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.01110 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46419 * 275.36950 * 11 10 8 36 36 H 1.08996 * 109.47006 * 35.36606 * 11 10 8 37 37 H 1.08989 * 109.47285 * 155.36934 * 11 10 8 38 38 H 1.08997 * 109.47725 * 330.00364 * 12 10 8 39 39 H 1.09005 * 109.46871 * 209.99878 * 12 10 8 40 40 H 0.96698 * 113.99724 * 300.00074 * 15 13 12 41 41 H 1.09000 * 109.46883 * 64.99732 * 16 13 12 42 42 H 1.08997 * 109.46648 * 305.00120 * 16 13 12 43 43 H 1.08995 * 109.47170 * 272.82058 * 18 17 16 44 44 H 1.09003 * 109.47407 * 32.81638 * 18 17 16 45 45 H 1.09000 * 109.47107 * 152.81623 * 18 17 16 46 46 H 0.96999 * 120.00379 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2910 2.3743 -0.0005 5 6 1.9129 3.6104 -0.0011 6 6 3.2892 3.6961 -0.0005 7 6 4.0609 2.5319 0.0000 8 6 5.5353 2.6195 0.0011 9 8 6.1856 1.9330 -0.7629 10 7 6.1598 3.4606 0.8490 11 6 5.3757 4.3660 1.6927 12 6 7.6227 3.4695 0.9271 13 6 8.1810 4.4780 -0.0790 14 1 7.7986 5.4722 0.1527 15 8 7.7766 4.1079 -1.3988 16 6 9.7088 4.4878 0.0029 17 7 10.2381 5.5361 -0.8729 18 6 10.5595 5.2308 -2.2693 19 6 10.4324 6.8013 -0.3866 20 1 9.8103 7.1735 0.4140 21 6 11.4328 7.6032 -0.9184 22 7 12.1876 7.1516 -1.8975 23 14 11.7079 9.3235 -0.2444 24 1 12.0437 9.2416 1.1998 25 1 12.8265 9.9693 -0.9772 26 1 10.4720 10.1277 -0.4204 27 6 3.4322 1.2840 -0.0050 28 9 4.1704 0.1525 -0.0103 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8899 32 1 0.2127 2.3149 -0.0014 33 1 1.3179 4.5117 -0.0019 34 1 3.7702 4.6630 -0.0014 35 1 5.1348 5.2686 1.1310 36 1 4.4538 3.8710 1.9979 37 1 5.9551 4.6319 2.5767 38 1 8.0050 2.4755 0.6954 39 1 7.9310 3.7520 1.9338 40 1 8.0823 3.2324 -1.6727 41 1 10.0958 3.5194 -0.3143 42 1 10.0162 4.6831 1.0302 43 1 11.5804 4.8545 -2.3333 44 1 9.8695 4.4747 -2.6440 45 1 10.4675 6.1360 -2.8696 46 1 12.8864 7.7121 -2.2694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284516598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:58 Heat of formation + Delta-G solvation = -98.319328 kcal Electronic energy + Delta-G solvation = -30141.737405 eV Core-core repulsion = 25755.218301 eV Total energy + Delta-G solvation = -4386.519104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.96517 -40.65369 -39.78298 -37.70914 -36.99677 -35.36005 -34.46623 -31.61277 -31.20756 -30.75615 -29.40191 -27.86140 -27.00906 -25.93649 -25.56235 -23.57687 -22.89185 -21.83212 -20.50389 -19.95689 -18.42265 -17.63341 -17.28868 -16.80888 -16.77880 -16.43753 -16.11942 -15.76277 -15.26721 -15.20987 -14.92536 -14.87004 -14.69123 -14.49785 -13.80957 -13.59587 -13.29229 -13.19120 -13.11518 -12.80354 -12.78438 -12.65364 -12.41652 -11.87909 -11.77942 -11.74023 -11.60088 -11.36178 -11.07550 -10.84596 -10.65818 -10.47462 -10.20252 -10.03890 -9.91521 -9.88635 -9.56221 -9.27401 -8.62120 -8.55387 -8.35731 -6.52339 -5.68332 -3.18443 0.44352 0.82951 2.48750 2.67703 3.04563 3.24210 3.39984 3.44563 3.45742 3.83451 4.17397 4.33873 4.51246 4.53197 4.61720 4.67812 4.76227 4.89933 4.97253 5.02285 5.10672 5.17704 5.35659 5.46135 5.46994 5.50589 5.55407 5.61543 5.74626 5.77681 5.88806 5.92777 6.05663 6.09335 6.15931 6.51790 6.66090 6.81452 6.81796 7.07342 7.31726 7.58362 7.79990 7.91267 8.13875 8.43367 8.51689 9.32048 9.93046 10.46274 11.36865 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025149 B = 0.002346 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.095943 B =11931.509801 C =12425.521705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.087 3.913 4 C -0.166 4.166 5 C -0.095 4.095 6 C -0.098 4.098 7 C -0.119 4.119 8 C 0.565 3.435 9 O -0.514 6.514 10 N -0.599 5.599 11 C 0.073 3.927 12 C 0.083 3.917 13 C 0.071 3.929 14 H 0.092 0.908 15 O -0.547 6.547 16 C 0.125 3.875 17 N -0.593 5.593 18 C 0.168 3.832 19 C -0.256 4.256 20 H 0.062 0.938 21 C 0.005 3.995 22 N -0.907 5.907 23 Si 0.905 3.095 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.117 3.883 28 F -0.116 7.116 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.367 0.633 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.012 0.988 44 H -0.001 1.001 45 H 0.054 0.946 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.764 -10.582 8.330 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.041 3.959 4 C -0.185 4.185 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.124 4.124 8 C 0.352 3.648 9 O -0.389 6.389 10 N -0.332 5.332 11 C -0.070 4.070 12 C -0.040 4.040 13 C 0.007 3.993 14 H 0.110 0.890 15 O -0.352 6.352 16 C -0.004 4.004 17 N -0.315 5.315 18 C 0.023 3.977 19 C -0.386 4.386 20 H 0.080 0.920 21 C -0.193 4.193 22 N -0.551 5.551 23 Si 0.735 3.265 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.096 3.904 28 F -0.095 7.095 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.214 0.786 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.030 0.970 44 H 0.017 0.983 45 H 0.073 0.927 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -25.383 -10.506 7.827 28.565 hybrid contribution 0.250 0.531 0.414 0.719 sum -25.133 -9.975 8.241 28.268 Atomic orbital electron populations 1.23143 0.77731 1.04474 1.01528 1.86165 1.21826 1.25438 1.88776 1.18824 0.90351 0.85973 1.00720 1.21284 1.00465 0.91423 1.05330 1.20959 0.94228 0.97417 0.98741 1.21351 0.93609 0.97696 0.98971 1.19885 0.94734 0.92209 1.05538 1.17795 0.86118 0.80130 0.80805 1.90789 1.66341 1.43828 1.37980 1.47574 1.07202 1.38199 1.40185 1.22042 0.96515 0.93561 0.94878 1.22484 0.78082 1.02226 1.01246 1.23235 0.97411 0.96697 0.81948 0.88997 1.86544 1.78629 1.38825 1.31168 1.21315 0.90890 0.92573 0.95580 1.43665 1.74810 1.06291 1.06765 1.20774 0.94857 0.97730 0.84292 1.19067 1.11266 0.90326 1.17922 0.91992 1.25224 0.96314 0.99074 0.98698 1.70046 1.22012 1.36267 1.26784 0.86344 0.77419 0.84252 0.78523 1.20956 1.21622 1.21061 1.16826 0.85829 0.82222 1.05490 1.91563 1.76319 1.48107 1.93475 0.92297 0.87799 0.92352 0.84146 0.84288 0.83697 0.92069 0.91108 0.90535 0.89845 0.89680 0.78627 0.94253 0.92880 0.96970 0.98296 0.92709 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.10 10.36 -19.65 -0.20 -3.30 16 3 C 0.09 0.92 6.69 -39.23 -0.26 0.66 16 4 C -0.17 -1.23 9.03 -39.37 -0.36 -1.59 16 5 C -0.10 -0.68 10.02 -39.66 -0.40 -1.08 16 6 C -0.10 -0.92 7.71 -39.17 -0.30 -1.23 16 7 C -0.12 -1.52 4.99 -104.93 -0.52 -2.05 16 8 C 0.56 8.69 6.64 -12.40 -0.08 8.61 16 9 O -0.51 -9.69 14.63 -8.38 -0.12 -9.81 16 10 N -0.60 -7.96 2.83 -182.75 -0.52 -8.48 16 11 C 0.07 0.68 9.06 59.85 0.54 1.22 16 12 C 0.08 1.17 5.18 -4.04 -0.02 1.15 16 13 C 0.07 1.26 3.48 -26.73 -0.09 1.17 16 14 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 15 O -0.55 -10.93 10.83 -48.91 -0.53 -11.46 16 16 C 0.13 2.57 5.34 -4.04 -0.02 2.55 16 17 N -0.59 -15.37 2.88 -181.12 -0.52 -15.89 16 18 C 0.17 4.42 8.81 59.85 0.53 4.94 16 19 C -0.26 -7.13 9.61 -15.06 -0.14 -7.27 16 20 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 21 C 0.01 0.15 5.29 -17.43 -0.09 0.06 16 22 N -0.91 -27.09 10.51 55.49 0.58 -26.51 16 23 Si 0.90 22.00 29.55 -169.99 -5.02 16.97 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.12 1.56 7.26 -38.82 -0.28 1.28 16 28 F -0.12 -1.84 16.27 2.25 0.04 -1.80 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.19 7.66 -51.93 -0.40 -0.20 16 32 H 0.14 0.61 6.27 -52.49 -0.33 0.28 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.15 1.23 6.03 -52.49 -0.32 0.91 16 35 H 0.06 0.54 6.97 -51.93 -0.36 0.17 16 36 H 0.07 0.55 6.18 -51.93 -0.32 0.23 16 37 H 0.08 0.60 7.83 -51.94 -0.41 0.19 16 38 H 0.08 1.24 7.49 -51.93 -0.39 0.85 16 39 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 40 H 0.37 6.94 8.30 45.56 0.38 7.32 16 41 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 42 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 43 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 44 H 0.00 -0.03 7.07 -51.93 -0.37 -0.40 16 45 H 0.05 1.57 6.87 -51.93 -0.36 1.22 16 46 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -36.11 378.62 -6.84 -42.94 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.73 Total: 2.10 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -0.52 Total: 9.54 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.46 Total: -50.88 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.86 Total: -24.58 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.11 -6.84 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284516598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.379 kcal (2) G-P(sol) polarization free energy of solvation -36.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds