Wall clock time and date at job start Tue Mar 31 2020 22:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99786 * 2 1 4 4 C 1.53001 * 109.46921 * 269.99773 * 3 2 1 5 5 H 1.09008 * 110.88835 * 305.70072 * 4 3 2 6 6 C 1.55154 * 111.00676 * 181.82127 * 4 3 2 7 7 C 1.54373 * 102.92296 * 206.45323 * 6 4 3 8 8 N 1.47013 * 107.28781 * 22.13643 * 7 6 4 9 9 C 1.34774 * 125.64973 * 181.05534 * 8 7 6 10 10 O 1.21289 * 120.00293 * 180.02562 * 9 8 7 11 11 C 1.50706 * 120.00022 * 0.04361 * 9 8 7 12 12 S 1.81001 * 109.47179 * 179.97438 * 11 9 8 13 13 C 1.76199 * 99.99509 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00330 * 0.02562 * 13 12 11 15 15 C 1.38809 * 119.99605 * 179.97438 * 13 12 11 16 16 N 1.31626 * 119.99826 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99774 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47493 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47194 * 120.00028 * 17 15 13 20 20 H 1.48502 * 109.47046 * 240.00046 * 17 15 13 21 21 C 1.47432 * 108.70659 * 1.09231 * 8 7 6 22 22 C 1.34772 * 120.00128 * 179.97438 * 2 1 3 23 23 O 1.21281 * 119.99944 * 180.02562 * 22 2 1 24 24 C 1.50702 * 120.00065 * 0.02562 * 22 2 1 25 25 C 1.53002 * 109.47277 * 180.02562 * 24 22 2 26 26 C 1.53002 * 117.49773 * 185.00031 * 25 24 22 27 27 C 1.53000 * 60.02940 * 252.51785 * 26 25 24 28 28 H 1.09002 * 109.47305 * 270.00252 * 1 2 3 29 29 H 1.08998 * 109.47050 * 30.00830 * 1 2 3 30 30 H 1.09001 * 109.46965 * 150.00479 * 1 2 3 31 31 H 1.09002 * 109.47586 * 29.99327 * 3 2 1 32 32 H 1.08998 * 109.47138 * 150.00163 * 3 2 1 33 33 H 1.09003 * 110.71811 * 324.78552 * 6 4 3 34 34 H 1.09001 * 110.72205 * 88.05906 * 6 4 3 35 35 H 1.09002 * 109.84111 * 262.72855 * 7 6 4 36 36 H 1.09001 * 110.02888 * 141.64981 * 7 6 4 37 37 H 1.08997 * 109.46821 * 300.00377 * 11 9 8 38 38 H 1.09005 * 109.46667 * 59.99719 * 11 9 8 39 39 H 0.97006 * 119.99529 * 180.02562 * 16 15 13 40 40 H 1.08993 * 110.36978 * 217.03054 * 21 8 7 41 41 H 1.09007 * 110.45798 * 94.75459 * 21 8 7 42 42 H 1.09003 * 109.47391 * 59.99713 * 24 22 2 43 43 H 1.09003 * 109.47132 * 300.00008 * 24 22 2 44 44 H 1.09000 * 115.55766 * 330.68347 * 25 24 22 45 45 H 1.09002 * 117.49918 * 145.01819 * 26 25 24 46 46 H 1.09002 * 117.49754 * 0.02562 * 26 25 24 47 47 H 1.09008 * 117.49673 * 107.47884 * 27 26 25 48 48 H 1.08999 * 117.49942 * 252.47315 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.9534 0.9238 -2.0070 6 6 3.2675 3.0300 -1.4844 7 6 2.8475 3.6525 -2.8332 8 7 1.5494 3.0674 -3.1990 9 6 0.8541 3.3379 -4.3215 10 8 -0.2117 2.7944 -4.5206 11 6 1.4012 4.3157 -5.3294 12 16 0.2465 4.4630 -6.7154 13 6 1.1113 5.6314 -7.7111 14 1 2.0633 6.0212 -7.3825 15 6 0.5694 6.0500 -8.9186 16 7 -0.5902 5.5737 -9.3198 17 14 1.4866 7.2882 -9.9746 18 1 2.7573 7.6650 -9.3048 19 1 1.7842 6.6853 -11.2987 20 1 0.6471 8.4991 -10.1594 21 6 1.1335 2.1362 -2.1343 22 6 2.1389 -1.1671 0.0005 23 8 3.3517 -1.1671 0.0010 24 6 1.3855 -2.4723 0.0005 25 6 2.3797 -3.6352 0.0018 26 6 1.8113 -5.0508 -0.1163 27 6 2.3792 -4.5641 1.2184 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0285 0.5137 32 1 3.1499 1.1384 0.5138 33 1 2.9892 3.6815 -0.6560 34 1 4.3376 2.8230 -1.4710 35 1 3.5889 3.4163 -3.5965 36 1 2.7515 4.7335 -2.7316 37 1 1.5297 5.2899 -4.8578 38 1 2.3642 3.9594 -5.6954 39 1 -0.9687 5.8660 -10.1638 40 1 0.6328 1.2684 -2.5635 41 1 0.4774 2.6388 -1.4235 42 1 0.7591 -2.5303 -0.8897 43 1 0.7585 -2.5299 0.8903 44 1 3.3374 -3.4357 -0.4790 45 1 2.3950 -5.7826 -0.6748 46 1 0.7290 -5.1535 -0.1953 47 1 1.6705 -4.3464 2.0175 48 1 3.3363 -4.9760 1.5383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284825181.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:14 Heat of formation + Delta-G solvation = -47.218654 kcal Electronic energy + Delta-G solvation = -26807.848790 eV Core-core repulsion = 22989.758754 eV Total energy + Delta-G solvation = -3818.090037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.56755 -39.64638 -37.77725 -37.16785 -35.73135 -32.60099 -32.43129 -30.32362 -29.65277 -28.81347 -27.45767 -25.60426 -25.21722 -23.20907 -22.73711 -21.41596 -20.65749 -19.41481 -19.34086 -17.74218 -17.41983 -16.82918 -16.63657 -16.26864 -16.09038 -15.22380 -15.09295 -14.80873 -14.48670 -14.34126 -14.10864 -13.85817 -13.62673 -13.47589 -13.30973 -12.90028 -12.82874 -12.68991 -12.62036 -12.34421 -12.19043 -11.88946 -11.80822 -11.71985 -11.63780 -11.13936 -11.07475 -11.01604 -10.92869 -10.75822 -10.73362 -10.40807 -10.01752 -9.81128 -9.43814 -9.07822 -9.02934 -8.51210 -8.23716 -6.50814 -6.22322 -3.92810 2.32255 2.59714 2.91448 3.05263 3.21218 3.26129 3.31074 3.43322 3.61767 4.10494 4.19196 4.24659 4.30931 4.37173 4.52529 4.53852 4.70039 4.74919 4.88666 4.97241 5.00238 5.05855 5.10293 5.11351 5.13018 5.17638 5.22488 5.27456 5.34037 5.39169 5.44999 5.51600 5.53262 5.57563 5.64333 5.70576 5.74258 5.78275 5.91350 5.94822 5.97371 6.14149 6.18189 6.41925 6.99376 7.59486 7.66689 7.85651 8.35092 8.54528 9.23147 10.85203 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.001929 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.756212 B =14515.425933 C =15010.391083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.618 5.618 3 C 0.128 3.872 4 C -0.119 4.119 5 H 0.089 0.911 6 C -0.122 4.122 7 C 0.102 3.898 8 N -0.627 5.627 9 C 0.549 3.451 10 O -0.517 6.517 11 C -0.147 4.147 12 S -0.062 6.062 13 C -0.534 4.534 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.115 3.885 22 C 0.517 3.483 23 O -0.536 6.536 24 C -0.110 4.110 25 C -0.142 4.142 26 C -0.180 4.180 27 C -0.179 4.179 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.570 -14.066 24.644 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.351 5.351 3 C 0.005 3.995 4 C -0.139 4.139 5 H 0.108 0.892 6 C -0.161 4.161 7 C -0.021 4.021 8 N -0.364 5.364 9 C 0.337 3.663 10 O -0.392 6.392 11 C -0.297 4.297 12 S 0.165 5.835 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.008 4.008 22 C 0.305 3.695 23 O -0.412 6.412 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.217 4.217 27 C -0.216 4.216 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.136 0.864 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.429 -14.844 24.127 28.671 hybrid contribution 1.697 1.518 -0.508 2.333 sum 6.125 -13.326 23.619 27.802 Atomic orbital electron populations 1.21960 0.79098 1.04136 1.02063 1.47878 1.07202 1.06018 1.74031 1.21418 0.98128 0.84516 0.95450 1.22819 0.96339 0.97984 0.96749 0.89249 1.22632 1.00702 0.95738 0.97004 1.21996 0.85442 0.98200 0.96502 1.48516 1.21935 1.45317 1.20667 1.20034 0.83979 0.82129 0.80137 1.90701 1.21512 1.51321 1.75623 1.23510 1.05539 0.99933 1.00739 1.85380 1.26149 1.57708 1.14259 1.22903 1.08822 1.28979 1.07546 0.90871 1.25000 0.95119 0.96687 0.96823 1.70032 1.16717 1.41948 1.21575 0.86108 0.79441 0.80197 0.79690 1.19610 1.20554 1.20557 1.22222 0.95872 0.93325 0.89364 1.20622 0.88054 0.85304 0.75475 1.90691 1.13999 1.87276 1.49274 1.21268 0.98200 0.91186 1.04314 1.22085 1.01023 0.89631 1.03308 1.23006 1.01028 0.96995 1.00656 1.23040 1.02860 1.04078 0.91589 0.92278 0.90301 0.90680 0.90051 0.89175 0.90292 0.89681 0.91269 0.91132 0.89300 0.89319 0.92240 0.90672 0.91884 0.88268 0.88808 0.86391 0.88607 0.88703 0.88914 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 10.00 59.85 0.60 0.98 16 2 N -0.62 -4.82 2.82 -181.57 -0.51 -5.33 16 3 C 0.13 0.98 4.92 -4.04 -0.02 0.96 16 4 C -0.12 -1.10 3.27 -88.47 -0.29 -1.39 16 5 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 6 C -0.12 -0.98 6.42 -24.87 -0.16 -1.14 16 7 C 0.10 1.12 6.49 -3.04 -0.02 1.10 16 8 N -0.63 -9.20 3.33 -170.49 -0.57 -9.76 16 9 C 0.55 10.77 7.87 -10.98 -0.09 10.68 16 10 O -0.52 -12.06 16.12 5.55 0.09 -11.97 16 11 C -0.15 -3.07 5.35 36.01 0.19 -2.87 16 12 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 13 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 14 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 15 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 17 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 C 0.12 1.35 4.92 -2.52 -0.01 1.33 16 22 C 0.52 4.94 7.67 -10.99 -0.08 4.85 16 23 O -0.54 -7.05 15.14 5.56 0.08 -6.97 16 24 C -0.11 -0.75 4.53 -27.88 -0.13 -0.88 16 25 C -0.14 -1.12 5.42 -90.58 -0.49 -1.61 16 26 C -0.18 -1.13 10.25 -26.73 -0.27 -1.41 16 27 C -0.18 -1.18 10.18 -26.70 -0.27 -1.45 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.46 6.22 -51.93 -0.32 0.14 16 30 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 31 H 0.08 0.48 7.96 -51.93 -0.41 0.06 16 32 H 0.09 0.76 7.42 -51.93 -0.39 0.38 16 33 H 0.08 0.51 8.04 -51.93 -0.42 0.10 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 38 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 41 H 0.06 0.66 7.43 -51.93 -0.39 0.28 16 42 H 0.10 0.58 7.40 -51.93 -0.38 0.19 16 43 H 0.09 0.47 7.84 -51.93 -0.41 0.06 16 44 H 0.12 1.17 7.30 -51.93 -0.38 0.79 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.52 8.03 -51.92 -0.42 0.10 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -36.74 403.94 -10.20 -46.94 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.03 Total: -2.15 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.85 Total: -3.89 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.35 Total: -40.61 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.17 Total: -18.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.74 -10.20 -46.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284825181.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.283 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds