Wall clock time and date at job start Tue Mar 31 2020 22:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99786 * 2 1 4 4 C 1.53001 * 109.46921 * 269.99773 * 3 2 1 5 5 H 1.09008 * 110.88835 * 305.70072 * 4 3 2 6 6 C 1.55154 * 111.00676 * 181.82127 * 4 3 2 7 7 C 1.54373 * 102.92296 * 206.45323 * 6 4 3 8 8 N 1.47013 * 107.28781 * 22.13643 * 7 6 4 9 9 C 1.34774 * 125.64973 * 181.05534 * 8 7 6 10 10 O 1.21289 * 120.00293 * 180.02562 * 9 8 7 11 11 C 1.50706 * 120.00022 * 0.04361 * 9 8 7 12 12 S 1.81001 * 109.47179 * 179.97438 * 11 9 8 13 13 C 1.76199 * 99.99509 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00330 * 0.02562 * 13 12 11 15 15 C 1.38809 * 119.99605 * 179.97438 * 13 12 11 16 16 N 1.31626 * 119.99826 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99774 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47493 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47194 * 120.00028 * 17 15 13 20 20 H 1.48502 * 109.47046 * 240.00046 * 17 15 13 21 21 C 1.47432 * 108.70659 * 1.09231 * 8 7 6 22 22 C 1.34772 * 120.00128 * 179.97438 * 2 1 3 23 23 O 1.21281 * 119.99944 * 180.02562 * 22 2 1 24 24 C 1.50702 * 120.00065 * 0.02562 * 22 2 1 25 25 C 1.53002 * 109.47277 * 180.02562 * 24 22 2 26 26 C 1.53002 * 117.49773 * 185.00031 * 25 24 22 27 27 C 1.53000 * 60.02940 * 252.51785 * 26 25 24 28 28 H 1.09002 * 109.47305 * 270.00252 * 1 2 3 29 29 H 1.08998 * 109.47050 * 30.00830 * 1 2 3 30 30 H 1.09001 * 109.46965 * 150.00479 * 1 2 3 31 31 H 1.09002 * 109.47586 * 29.99327 * 3 2 1 32 32 H 1.08998 * 109.47138 * 150.00163 * 3 2 1 33 33 H 1.09003 * 110.71811 * 324.78552 * 6 4 3 34 34 H 1.09001 * 110.72205 * 88.05906 * 6 4 3 35 35 H 1.09002 * 109.84111 * 262.72855 * 7 6 4 36 36 H 1.09001 * 110.02888 * 141.64981 * 7 6 4 37 37 H 1.08997 * 109.46821 * 300.00377 * 11 9 8 38 38 H 1.09005 * 109.46667 * 59.99719 * 11 9 8 39 39 H 0.97006 * 119.99529 * 180.02562 * 16 15 13 40 40 H 1.08993 * 110.36978 * 217.03054 * 21 8 7 41 41 H 1.09007 * 110.45798 * 94.75459 * 21 8 7 42 42 H 1.09003 * 109.47391 * 59.99713 * 24 22 2 43 43 H 1.09003 * 109.47132 * 300.00008 * 24 22 2 44 44 H 1.09000 * 115.55766 * 330.68347 * 25 24 22 45 45 H 1.09002 * 117.49918 * 145.01819 * 26 25 24 46 46 H 1.09002 * 117.49754 * 0.02562 * 26 25 24 47 47 H 1.09008 * 117.49673 * 107.47884 * 27 26 25 48 48 H 1.08999 * 117.49942 * 252.47315 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.9534 0.9238 -2.0070 6 6 3.2675 3.0300 -1.4844 7 6 2.8475 3.6525 -2.8332 8 7 1.5494 3.0674 -3.1990 9 6 0.8541 3.3379 -4.3215 10 8 -0.2117 2.7944 -4.5206 11 6 1.4012 4.3157 -5.3294 12 16 0.2465 4.4630 -6.7154 13 6 1.1113 5.6314 -7.7111 14 1 2.0633 6.0212 -7.3825 15 6 0.5694 6.0500 -8.9186 16 7 -0.5902 5.5737 -9.3198 17 14 1.4866 7.2882 -9.9746 18 1 2.7573 7.6650 -9.3048 19 1 1.7842 6.6853 -11.2987 20 1 0.6471 8.4991 -10.1594 21 6 1.1335 2.1362 -2.1343 22 6 2.1389 -1.1671 0.0005 23 8 3.3517 -1.1671 0.0010 24 6 1.3855 -2.4723 0.0005 25 6 2.3797 -3.6352 0.0018 26 6 1.8113 -5.0508 -0.1163 27 6 2.3792 -4.5641 1.2184 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0285 0.5137 32 1 3.1499 1.1384 0.5138 33 1 2.9892 3.6815 -0.6560 34 1 4.3376 2.8230 -1.4710 35 1 3.5889 3.4163 -3.5965 36 1 2.7515 4.7335 -2.7316 37 1 1.5297 5.2899 -4.8578 38 1 2.3642 3.9594 -5.6954 39 1 -0.9687 5.8660 -10.1638 40 1 0.6328 1.2684 -2.5635 41 1 0.4774 2.6388 -1.4235 42 1 0.7591 -2.5303 -0.8897 43 1 0.7585 -2.5299 0.8903 44 1 3.3374 -3.4357 -0.4790 45 1 2.3950 -5.7826 -0.6748 46 1 0.7290 -5.1535 -0.1953 47 1 1.6705 -4.3464 2.0175 48 1 3.3363 -4.9760 1.5383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284825181.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:13 Heat of formation + Delta-G solvation = -70.288002 kcal Electronic energy + Delta-G solvation = -26808.849152 eV Core-core repulsion = 22989.758754 eV Total energy + Delta-G solvation = -3819.090399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39898 -40.75286 -38.78786 -37.93754 -36.51818 -34.60831 -33.63671 -31.21094 -30.84172 -29.69885 -28.17778 -27.66762 -26.11304 -24.19570 -23.22928 -22.09034 -21.37965 -20.77080 -20.03372 -19.60824 -18.13501 -18.03936 -17.66830 -17.10998 -16.90592 -16.83299 -16.53214 -16.11291 -15.68286 -15.45016 -14.96964 -14.89688 -14.50838 -14.42171 -14.27610 -14.10604 -13.80569 -13.58905 -13.42191 -13.36513 -13.19163 -13.15405 -12.92711 -12.81348 -12.62216 -12.41061 -12.35205 -12.29074 -11.93995 -11.73571 -11.65782 -11.29948 -11.17587 -11.01608 -10.97476 -10.70182 -10.31368 -9.73304 -9.67884 -8.70371 -8.36864 -6.15590 1.22025 1.40370 1.43344 1.51952 1.55805 1.62868 2.01518 2.07470 2.25192 2.90744 2.97343 3.20024 3.44357 3.53804 3.57226 3.76465 3.79868 3.87851 4.03645 4.13758 4.17309 4.23996 4.28094 4.29894 4.36558 4.41659 4.49975 4.53602 4.62098 4.65264 4.66855 4.78730 4.79590 4.80067 4.82291 4.91787 4.96907 5.04309 5.05310 5.22315 5.26386 5.33508 5.35279 5.40004 5.55913 6.17998 6.34343 6.37296 7.04333 7.06915 7.17777 8.72732 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.001929 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.756212 B =14515.425933 C =15010.391083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.617 5.617 3 C 0.129 3.871 4 C -0.106 4.106 5 H 0.063 0.937 6 C -0.110 4.110 7 C 0.090 3.910 8 N -0.619 5.619 9 C 0.546 3.454 10 O -0.566 6.566 11 C -0.121 4.121 12 S -0.149 6.149 13 C -0.547 4.547 14 H 0.082 0.918 15 C 0.013 3.987 16 N -0.910 5.910 17 Si 1.000 3.000 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.272 1.272 21 C 0.113 3.887 22 C 0.509 3.491 23 O -0.581 6.581 24 C -0.103 4.103 25 C -0.162 4.162 26 C -0.171 4.171 27 C -0.177 4.177 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.272 0.728 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 -13.183 26.562 30.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.349 5.349 3 C 0.006 3.994 4 C -0.127 4.127 5 H 0.082 0.918 6 C -0.148 4.148 7 C -0.032 4.032 8 N -0.354 5.354 9 C 0.334 3.666 10 O -0.445 6.445 11 C -0.272 4.272 12 S 0.079 5.921 13 C -0.694 4.694 14 H 0.100 0.900 15 C -0.191 4.191 16 N -0.547 5.547 17 Si 0.822 3.178 18 H -0.181 1.181 19 H -0.199 1.199 20 H -0.197 1.197 21 C -0.009 4.009 22 C 0.299 3.701 23 O -0.461 6.461 24 C -0.143 4.143 25 C -0.181 4.181 26 C -0.208 4.208 27 C -0.214 4.214 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.346 -13.959 26.097 30.075 hybrid contribution 1.458 1.181 -0.992 2.123 sum 6.804 -12.778 25.106 28.981 Atomic orbital electron populations 1.22149 0.77429 1.04472 1.03620 1.48001 1.08270 1.05675 1.72927 1.21455 0.98595 0.85150 0.94166 1.22681 0.94799 0.97979 0.97214 0.91805 1.22652 1.01299 0.94843 0.95990 1.22356 0.83471 0.99156 0.98241 1.48491 1.22587 1.44873 1.19468 1.19755 0.83774 0.81863 0.81231 1.90677 1.23648 1.53146 1.76979 1.23311 1.03772 1.01626 0.98484 1.85541 1.30069 1.58362 1.18174 1.23224 1.09115 1.29042 1.08057 0.89987 1.26144 0.95971 0.98782 0.98239 1.70188 1.18610 1.43601 1.22287 0.84888 0.78362 0.77140 0.77446 1.18066 1.19904 1.19743 1.22432 0.97426 0.92287 0.88732 1.21132 0.87717 0.86547 0.74716 1.90666 1.15949 1.87963 1.51535 1.21285 0.97847 0.89229 1.05899 1.22023 1.00448 0.90993 1.04589 1.23082 1.01871 0.95625 1.00213 1.23126 1.03159 1.03248 0.91838 0.90010 0.90677 0.89759 0.87319 0.89740 0.87634 0.88221 0.91230 0.89710 0.87447 0.87994 0.91924 0.92579 0.89835 0.87231 0.86334 0.89358 0.88664 0.87155 0.87459 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.00 127.77 1.28 1.83 16 2 N -0.62 -8.66 2.82 -846.75 -2.39 -11.05 16 3 C 0.13 1.70 4.92 86.38 0.43 2.13 16 4 C -0.11 -1.79 3.27 -9.40 -0.03 -1.83 16 5 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 6 C -0.11 -1.43 6.42 31.80 0.20 -1.23 16 7 C 0.09 1.76 6.49 86.75 0.56 2.32 16 8 N -0.62 -17.48 3.33 -811.68 -2.70 -20.18 16 9 C 0.55 21.51 7.87 87.66 0.69 22.20 16 10 O -0.57 -27.21 16.12 -3.06 -0.05 -27.26 16 11 C -0.12 -5.04 5.35 71.24 0.38 -4.66 16 12 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 13 C -0.55 -31.61 9.50 67.96 0.65 -30.96 16 14 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 15 C 0.01 0.77 5.49 84.86 0.47 1.24 16 16 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 17 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 C 0.11 2.51 4.92 86.85 0.43 2.93 16 22 C 0.51 9.45 7.67 87.66 0.67 10.12 16 23 O -0.58 -15.65 15.14 -3.03 -0.05 -15.70 16 24 C -0.10 -1.29 4.53 29.85 0.14 -1.16 16 25 C -0.16 -2.53 5.42 -10.77 -0.06 -2.59 16 26 C -0.17 -1.97 10.25 30.60 0.31 -1.66 16 27 C -0.18 -2.17 10.18 30.62 0.31 -1.86 16 28 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.72 6.22 -2.39 -0.01 0.70 16 30 H 0.08 0.57 6.44 -2.39 -0.02 0.55 16 31 H 0.11 0.86 7.96 -2.39 -0.02 0.85 16 32 H 0.08 1.28 7.42 -2.39 -0.02 1.26 16 33 H 0.11 0.89 8.04 -2.39 -0.02 0.88 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 38 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 39 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 40 H 0.06 1.48 7.96 -2.39 -0.02 1.46 16 41 H 0.08 1.56 7.43 -2.38 -0.02 1.54 16 42 H 0.11 1.12 7.40 -2.39 -0.02 1.10 16 43 H 0.12 0.87 7.84 -2.39 -0.02 0.85 16 44 H 0.09 1.91 7.30 -2.39 -0.02 1.89 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.11 0.99 8.03 -2.38 -0.02 0.97 16 48 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -84.00 403.94 3.33 -80.67 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.94 Total: 16.31 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 6.42 Total: -3.16 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -4.80 Total: -87.13 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.10 Total: -42.96 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -84.00 3.33 -80.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284825181.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.378 kcal (2) G-P(sol) polarization free energy of solvation -83.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds