Wall clock time and date at job start Tue Mar 31 2020 22:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35965 * 116.99789 * 2 1 4 4 C 1.38667 * 119.99473 * 359.97438 * 3 2 1 5 5 C 1.38373 * 120.28513 * 180.02562 * 4 3 2 6 6 C 1.37884 * 120.26681 * 359.73941 * 5 4 3 7 7 C 1.39670 * 119.98583 * 0.51820 * 6 5 4 8 8 C 1.47703 * 120.14388 * 179.76635 * 7 6 5 9 9 O 1.21575 * 119.99988 * 227.90669 * 8 7 6 10 10 N 1.34779 * 120.00531 * 47.90112 * 8 7 6 11 11 C 1.46504 * 119.99352 * 355.61566 * 10 8 7 12 12 C 1.46497 * 120.00278 * 175.61911 * 10 8 7 13 13 C 1.52994 * 109.47249 * 89.99839 * 12 10 8 14 14 O 1.42898 * 109.47162 * 65.00104 * 13 12 10 15 15 C 1.42902 * 114.00103 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47095 * 179.97438 * 15 14 13 17 17 N 1.46495 * 109.47350 * 64.99759 * 16 15 14 18 18 C 1.36939 * 120.00008 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00197 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99773 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00175 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00356 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47060 * 90.00035 * 22 20 18 24 24 H 1.48496 * 109.47046 * 210.00373 * 22 20 18 25 25 H 1.48504 * 109.47060 * 330.00096 * 22 20 18 26 26 C 1.38775 * 119.99518 * 179.97438 * 3 2 1 27 27 F 1.35103 * 120.12795 * 359.95319 * 26 3 2 28 28 H 1.09003 * 109.46580 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46967 * 300.00100 * 1 2 3 30 30 H 1.08997 * 109.47246 * 60.00133 * 1 2 3 31 31 H 1.07999 * 119.85495 * 0.04656 * 4 3 2 32 32 H 1.07997 * 119.86480 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.01000 * 180.27617 * 6 5 4 34 34 H 1.08999 * 109.47143 * 274.75487 * 11 10 8 35 35 H 1.08999 * 109.47072 * 34.75879 * 11 10 8 36 36 H 1.08999 * 109.46896 * 154.75872 * 11 10 8 37 37 H 1.09003 * 109.46810 * 210.00248 * 12 10 8 38 38 H 1.08996 * 109.46990 * 329.99991 * 12 10 8 39 39 H 1.08996 * 109.47443 * 184.99950 * 13 12 10 40 40 H 1.08998 * 109.47172 * 305.00099 * 13 12 10 41 41 H 1.09002 * 109.47243 * 299.99451 * 15 14 13 42 42 H 1.09002 * 109.47238 * 60.00226 * 15 14 13 43 43 H 1.09003 * 109.47268 * 185.00404 * 16 15 14 44 44 H 1.08999 * 109.46926 * 304.99566 * 16 15 14 45 45 H 0.96997 * 119.99915 * 0.02562 * 17 16 15 46 46 H 0.96998 * 120.00501 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2908 2.3743 -0.0005 5 6 1.9127 3.6104 -0.0011 6 6 3.2889 3.6961 0.0043 7 6 4.0607 2.5320 -0.0006 8 6 5.5352 2.6197 0.0000 9 8 6.1840 1.9546 -0.7841 10 7 6.1614 3.4371 0.8696 11 6 5.3786 4.3097 1.7482 12 6 7.6248 3.4529 0.9362 13 6 8.1685 4.4968 -0.0413 14 8 7.7569 5.8001 0.3759 15 6 8.2140 6.8539 -0.4741 16 6 7.7164 8.1964 0.0653 17 7 8.3306 8.4565 1.3696 18 6 8.0323 9.6071 2.0496 19 1 7.3446 10.3230 1.6242 20 6 8.6147 9.8538 3.2853 21 7 8.3285 10.9600 3.9387 22 14 9.8047 8.6160 4.0209 23 1 11.1868 8.9377 3.5833 24 1 9.7279 8.6759 5.5027 25 1 9.4452 7.2503 3.5614 26 6 3.4321 1.2840 0.0005 27 9 4.1704 0.1526 0.0020 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2125 2.3150 -0.0002 32 1 1.3178 4.5118 -0.0011 33 1 3.7700 4.6630 0.0084 34 1 5.1368 5.2329 1.2217 35 1 4.4572 3.8034 2.0359 36 1 5.9595 4.5420 2.6409 37 1 7.9397 3.7047 1.9489 38 1 8.0113 2.4693 0.6694 39 1 9.2572 4.4474 -0.0573 40 1 7.7810 4.2959 -1.0401 41 1 9.3038 6.8536 -0.4994 42 1 7.8271 6.7017 -1.4817 43 1 7.9890 8.9908 -0.6296 44 1 6.6323 8.1650 0.1740 45 1 8.9485 7.8138 1.7516 46 1 8.7351 11.1322 4.8023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284876997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:00 Heat of formation + Delta-G solvation = -104.786612 kcal Electronic energy + Delta-G solvation = -29681.181223 eV Core-core repulsion = 25294.381676 eV Total energy + Delta-G solvation = -4386.799547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.05059 -40.73933 -39.88746 -37.98623 -37.45670 -35.73960 -34.55853 -31.97831 -31.41845 -30.83919 -29.76583 -28.04695 -27.87881 -26.66025 -24.42182 -23.28339 -22.96716 -22.50220 -21.13659 -20.05301 -18.48634 -17.70135 -17.62860 -17.32219 -17.01607 -16.64353 -16.48939 -16.18784 -15.60148 -15.41496 -15.23912 -15.13440 -14.95364 -14.46449 -14.19792 -13.85240 -13.50476 -13.23504 -13.12237 -12.96990 -12.83435 -12.80097 -12.60628 -12.46556 -12.02766 -11.98956 -11.89714 -11.81486 -11.54783 -11.49360 -11.11292 -10.85155 -10.52449 -10.15142 -10.09682 -9.58104 -9.38301 -9.35186 -8.89813 -8.80090 -8.65473 -7.19834 -5.74765 -3.09304 0.37527 0.78730 2.32651 2.56517 2.91147 3.16355 3.39879 3.44608 3.47231 3.77089 3.87638 4.09225 4.30752 4.46942 4.59686 4.62143 4.65663 4.73941 4.86006 4.99208 5.01989 5.06042 5.19909 5.26982 5.37463 5.41691 5.48386 5.50377 5.55338 5.56950 5.60056 5.67631 5.72540 5.80083 5.82759 5.88549 6.00890 6.05531 6.33320 6.51001 6.64118 6.77292 7.13724 7.44624 7.90073 8.01388 8.44294 9.24456 9.96927 10.17918 11.43687 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.002438 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.096499 B =11481.755457 C =12081.530910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.088 3.912 4 C -0.164 4.164 5 C -0.093 4.093 6 C -0.095 4.095 7 C -0.124 4.124 8 C 0.561 3.439 9 O -0.527 6.527 10 N -0.596 5.596 11 C 0.078 3.922 12 C 0.120 3.880 13 C 0.043 3.957 14 O -0.374 6.374 15 C 0.054 3.946 16 C 0.160 3.840 17 N -0.751 5.751 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.936 5.936 22 Si 0.884 3.116 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.274 1.274 26 C 0.117 3.883 27 F -0.118 7.118 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.040 0.960 44 H 0.033 0.967 45 H 0.364 0.636 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 -21.342 -8.745 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.042 3.958 4 C -0.183 4.183 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.128 4.128 8 C 0.348 3.652 9 O -0.404 6.404 10 N -0.328 5.328 11 C -0.064 4.064 12 C -0.002 4.002 13 C -0.035 4.035 14 O -0.293 6.293 15 C -0.022 4.022 16 C 0.033 3.967 17 N -0.397 5.397 18 C -0.371 4.371 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.584 5.584 22 Si 0.714 3.286 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.200 1.200 26 C 0.096 3.904 27 F -0.096 7.096 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.197 0.803 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.563 -21.682 -8.928 28.142 hybrid contribution 0.852 -0.764 0.417 1.218 sum -14.711 -22.446 -8.510 28.154 Atomic orbital electron populations 1.23153 0.77638 1.04507 1.01612 1.86159 1.21903 1.25404 1.88764 1.18815 0.90316 0.86016 1.00691 1.21323 1.00575 0.91399 1.04960 1.20995 0.94242 0.97528 0.98317 1.21362 0.93707 0.97660 0.98669 1.19775 0.94309 0.92346 1.06343 1.17989 0.86513 0.79737 0.80969 1.90817 1.66661 1.44518 1.38400 1.47636 1.07036 1.40130 1.37993 1.22061 0.95955 0.93857 0.94542 1.21622 0.78669 0.99015 1.00900 1.22877 0.98483 0.84254 0.97900 1.87993 1.75879 1.13548 1.51850 1.22843 0.98200 0.88273 0.92933 1.20660 0.96833 0.90951 0.88274 1.42631 1.54542 1.23344 1.19188 1.19064 1.22525 0.95754 0.99806 0.89312 1.24661 1.00210 0.97192 0.97205 1.69706 1.47571 1.25515 1.15629 0.86538 0.81697 0.81829 0.78518 1.21254 1.21842 1.19964 1.16801 0.85869 0.82096 1.05661 1.91556 1.76338 1.48184 1.93531 0.87782 0.92250 0.92274 0.84031 0.84048 0.83493 0.91141 0.91387 0.90112 0.89033 0.88502 0.92517 0.93105 0.93468 0.93501 0.94214 0.94890 0.80330 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.98 10.36 -19.63 -0.20 -3.18 16 3 C 0.09 0.89 6.69 -39.22 -0.26 0.62 16 4 C -0.16 -1.18 9.03 -39.37 -0.36 -1.54 16 5 C -0.09 -0.66 10.02 -39.66 -0.40 -1.05 16 6 C -0.10 -0.87 7.75 -39.18 -0.30 -1.18 16 7 C -0.12 -1.48 4.93 -104.94 -0.52 -2.00 16 8 C 0.56 7.88 7.02 -12.39 -0.09 7.80 16 9 O -0.53 -9.05 16.24 5.30 0.09 -8.96 16 10 N -0.60 -7.48 2.84 -182.75 -0.52 -8.00 16 11 C 0.08 0.85 8.68 59.85 0.52 1.37 16 12 C 0.12 1.47 5.82 -4.05 -0.02 1.45 16 13 C 0.04 0.56 6.28 37.15 0.23 0.80 16 14 O -0.37 -5.93 9.85 -35.23 -0.35 -6.28 16 15 C 0.05 0.85 6.07 37.16 0.23 1.07 16 16 C 0.16 3.07 6.64 -4.04 -0.03 3.05 16 17 N -0.75 -17.98 5.35 -59.91 -0.32 -18.30 16 18 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 19 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 21 N -0.94 -29.42 13.97 55.49 0.78 -28.64 16 22 Si 0.88 22.20 27.74 -169.99 -4.71 17.49 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.27 -6.50 6.52 56.52 0.37 -6.13 16 26 C 0.12 1.47 7.26 -38.82 -0.28 1.19 16 27 F -0.12 -1.76 16.33 2.25 0.04 -1.72 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 30 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 31 H 0.14 0.60 6.27 -52.49 -0.33 0.27 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.15 1.23 6.20 -52.48 -0.33 0.91 16 34 H 0.07 0.78 7.04 -51.93 -0.37 0.42 16 35 H 0.07 0.62 6.22 -51.93 -0.32 0.30 16 36 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 37 H 0.09 1.05 7.86 -51.93 -0.41 0.64 16 38 H 0.10 1.14 7.49 -51.93 -0.39 0.76 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.36 8.63 5.53 -40.82 -0.23 8.41 16 46 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -36.41 386.57 -6.46 -42.87 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.54 Total: 3.24 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.54 Total: 5.66 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.06 Total: -54.94 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.46 Total: -18.43 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.41 -6.46 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284876997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.919 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds