Wall clock time and date at job start Tue Mar 31 2020 22:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35965 * 116.99789 * 2 1 4 4 C 1.38667 * 119.99473 * 359.97438 * 3 2 1 5 5 C 1.38373 * 120.28513 * 180.02562 * 4 3 2 6 6 C 1.37884 * 120.26681 * 359.73941 * 5 4 3 7 7 C 1.39670 * 119.98583 * 0.51820 * 6 5 4 8 8 C 1.47703 * 120.14388 * 179.76635 * 7 6 5 9 9 O 1.21575 * 119.99988 * 227.90669 * 8 7 6 10 10 N 1.34779 * 120.00531 * 47.90112 * 8 7 6 11 11 C 1.46504 * 119.99352 * 355.61566 * 10 8 7 12 12 C 1.46497 * 120.00278 * 175.61911 * 10 8 7 13 13 C 1.52994 * 109.47249 * 89.99839 * 12 10 8 14 14 O 1.42898 * 109.47162 * 65.00104 * 13 12 10 15 15 C 1.42902 * 114.00103 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47095 * 179.97438 * 15 14 13 17 17 N 1.46495 * 109.47350 * 64.99759 * 16 15 14 18 18 C 1.36939 * 120.00008 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00197 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99773 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00175 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00356 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47060 * 90.00035 * 22 20 18 24 24 H 1.48496 * 109.47046 * 210.00373 * 22 20 18 25 25 H 1.48504 * 109.47060 * 330.00096 * 22 20 18 26 26 C 1.38775 * 119.99518 * 179.97438 * 3 2 1 27 27 F 1.35103 * 120.12795 * 359.95319 * 26 3 2 28 28 H 1.09003 * 109.46580 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46967 * 300.00100 * 1 2 3 30 30 H 1.08997 * 109.47246 * 60.00133 * 1 2 3 31 31 H 1.07999 * 119.85495 * 0.04656 * 4 3 2 32 32 H 1.07997 * 119.86480 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.01000 * 180.27617 * 6 5 4 34 34 H 1.08999 * 109.47143 * 274.75487 * 11 10 8 35 35 H 1.08999 * 109.47072 * 34.75879 * 11 10 8 36 36 H 1.08999 * 109.46896 * 154.75872 * 11 10 8 37 37 H 1.09003 * 109.46810 * 210.00248 * 12 10 8 38 38 H 1.08996 * 109.46990 * 329.99991 * 12 10 8 39 39 H 1.08996 * 109.47443 * 184.99950 * 13 12 10 40 40 H 1.08998 * 109.47172 * 305.00099 * 13 12 10 41 41 H 1.09002 * 109.47243 * 299.99451 * 15 14 13 42 42 H 1.09002 * 109.47238 * 60.00226 * 15 14 13 43 43 H 1.09003 * 109.47268 * 185.00404 * 16 15 14 44 44 H 1.08999 * 109.46926 * 304.99566 * 16 15 14 45 45 H 0.96997 * 119.99915 * 0.02562 * 17 16 15 46 46 H 0.96998 * 120.00501 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2908 2.3743 -0.0005 5 6 1.9127 3.6104 -0.0011 6 6 3.2889 3.6961 0.0043 7 6 4.0607 2.5320 -0.0006 8 6 5.5352 2.6197 0.0000 9 8 6.1840 1.9546 -0.7841 10 7 6.1614 3.4371 0.8696 11 6 5.3786 4.3097 1.7482 12 6 7.6248 3.4529 0.9362 13 6 8.1685 4.4968 -0.0413 14 8 7.7569 5.8001 0.3759 15 6 8.2140 6.8539 -0.4741 16 6 7.7164 8.1964 0.0653 17 7 8.3306 8.4565 1.3696 18 6 8.0323 9.6071 2.0496 19 1 7.3446 10.3230 1.6242 20 6 8.6147 9.8538 3.2853 21 7 8.3285 10.9600 3.9387 22 14 9.8047 8.6160 4.0209 23 1 11.1868 8.9377 3.5833 24 1 9.7279 8.6759 5.5027 25 1 9.4452 7.2503 3.5614 26 6 3.4321 1.2840 0.0005 27 9 4.1704 0.1526 0.0020 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2125 2.3150 -0.0002 32 1 1.3178 4.5118 -0.0011 33 1 3.7700 4.6630 0.0084 34 1 5.1368 5.2329 1.2217 35 1 4.4572 3.8034 2.0359 36 1 5.9595 4.5420 2.6409 37 1 7.9397 3.7047 1.9489 38 1 8.0113 2.4693 0.6694 39 1 9.2572 4.4474 -0.0573 40 1 7.7810 4.2959 -1.0401 41 1 9.3038 6.8536 -0.4994 42 1 7.8271 6.7017 -1.4817 43 1 7.9890 8.9908 -0.6296 44 1 6.6323 8.1650 0.1740 45 1 8.9485 7.8138 1.7516 46 1 8.7351 11.1322 4.8023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284876997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:59 Heat of formation + Delta-G solvation = -130.662310 kcal Electronic energy + Delta-G solvation = -29682.303277 eV Core-core repulsion = 25294.381676 eV Total energy + Delta-G solvation = -4387.921601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.99961 -41.57273 -40.68749 -39.12591 -38.23768 -36.95412 -36.23690 -33.65828 -32.58900 -31.55994 -30.85190 -29.52052 -28.36411 -27.57019 -25.38281 -25.09295 -23.66469 -23.37465 -22.79148 -20.91424 -19.72329 -19.28624 -18.50826 -18.14356 -17.95807 -17.60266 -17.35836 -17.11850 -16.86653 -16.48935 -16.19014 -16.06028 -15.87173 -15.68162 -15.55791 -15.08599 -14.80706 -14.59134 -14.31429 -13.99567 -13.96869 -13.71655 -13.56202 -13.43320 -13.34307 -13.02777 -12.86907 -12.79266 -12.63074 -12.42578 -12.31365 -12.13317 -12.08368 -11.88226 -11.71305 -11.18450 -10.98310 -10.53903 -10.10532 -9.79799 -9.35775 -9.25603 -7.99263 -5.31615 -0.37167 0.09353 1.40438 1.41455 1.43564 1.52224 1.75226 2.20786 2.43783 2.52029 2.72851 3.05233 3.25765 3.32991 3.69538 3.73869 3.79153 4.01370 4.02204 4.08861 4.21218 4.29186 4.30741 4.36090 4.40178 4.42123 4.46659 4.51601 4.59958 4.63743 4.71741 4.76616 4.77355 4.87329 4.96451 5.01726 5.06121 5.13544 5.21784 5.35464 5.47688 5.78499 6.13850 6.19901 6.23649 6.31055 6.88301 7.11870 7.88422 8.08302 9.22178 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.002438 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.096499 B =11481.755457 C =12081.530910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.336 6.336 3 C 0.084 3.916 4 C -0.149 4.149 5 C -0.078 4.078 6 C -0.097 4.097 7 C -0.140 4.140 8 C 0.556 3.444 9 O -0.570 6.570 10 N -0.594 5.594 11 C 0.079 3.921 12 C 0.117 3.883 13 C 0.047 3.953 14 O -0.391 6.391 15 C 0.063 3.937 16 C 0.155 3.845 17 N -0.753 5.753 18 C -0.230 4.230 19 H 0.058 0.942 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.954 3.046 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.250 1.250 26 C 0.075 3.925 27 F -0.144 7.144 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.178 0.822 33 H 0.154 0.846 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.030 0.970 45 H 0.367 0.633 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.216 -22.066 -9.047 29.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.250 6.250 3 C 0.038 3.962 4 C -0.168 4.168 5 C -0.095 4.095 6 C -0.115 4.115 7 C -0.144 4.144 8 C 0.345 3.655 9 O -0.450 6.450 10 N -0.324 5.324 11 C -0.063 4.063 12 C -0.006 4.006 13 C -0.031 4.031 14 O -0.310 6.310 15 C -0.014 4.014 16 C 0.029 3.971 17 N -0.399 5.399 18 C -0.361 4.361 19 H 0.076 0.924 20 C -0.256 4.256 21 N -0.636 5.636 22 Si 0.782 3.218 23 H -0.207 1.207 24 H -0.224 1.224 25 H -0.174 1.174 26 C 0.055 3.945 27 F -0.123 7.123 28 H 0.135 0.865 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.196 0.804 33 H 0.172 0.828 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.200 0.800 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.980 -22.424 -9.259 29.612 hybrid contribution 1.113 -0.497 0.433 1.293 sum -15.867 -22.921 -8.826 29.241 Atomic orbital electron populations 1.23508 0.75128 1.06101 1.03195 1.86134 1.24563 1.25636 1.88686 1.18965 0.89586 0.87263 1.00375 1.21755 1.02190 0.90208 1.02637 1.21433 0.93448 0.98869 0.95778 1.21520 0.94696 0.96790 0.98536 1.19715 0.93207 0.93239 1.08194 1.18397 0.87532 0.79143 0.80456 1.90776 1.67787 1.46250 1.40218 1.47739 1.07324 1.39776 1.37607 1.22134 0.96454 0.93659 0.94017 1.21692 0.78713 0.98881 1.01277 1.22923 0.99423 0.83091 0.97639 1.87955 1.76307 1.14444 1.52311 1.22707 0.98599 0.86362 0.93713 1.20839 0.96449 0.93514 0.86316 1.42643 1.54832 1.21930 1.20537 1.19054 1.20890 0.96396 0.99791 0.92407 1.25483 1.02771 0.99400 0.97990 1.69884 1.49535 1.27962 1.16178 0.85406 0.79097 0.80269 0.77038 1.20745 1.22383 1.17437 1.17242 0.87148 0.81616 1.08537 1.91471 1.77177 1.49507 1.94110 0.86464 0.90512 0.90640 0.80370 0.80417 0.82833 0.91230 0.89772 0.90281 0.88071 0.88475 0.90910 0.93734 0.92672 0.90848 0.93556 0.95177 0.79974 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.34 -6.19 10.36 -93.16 -0.97 -7.16 16 3 C 0.08 1.62 6.69 22.50 0.15 1.77 16 4 C -0.15 -1.66 9.03 22.40 0.20 -1.46 16 5 C -0.08 -0.82 10.02 22.22 0.22 -0.60 16 6 C -0.10 -1.60 7.75 22.53 0.17 -1.42 16 7 C -0.14 -3.34 4.93 -20.07 -0.10 -3.44 16 8 C 0.56 15.94 7.02 86.74 0.61 16.54 16 9 O -0.57 -20.41 16.24 -3.95 -0.06 -20.47 16 10 N -0.59 -14.63 2.84 -850.36 -2.41 -17.04 16 11 C 0.08 1.62 8.68 127.77 1.11 2.73 16 12 C 0.12 2.76 5.82 86.38 0.50 3.26 16 13 C 0.05 1.15 6.28 71.98 0.45 1.60 16 14 O -0.39 -11.52 9.85 -148.98 -1.47 -12.99 16 15 C 0.06 1.79 6.07 71.98 0.44 2.23 16 16 C 0.15 5.67 6.64 86.38 0.57 6.25 16 17 N -0.75 -34.91 5.35 -343.46 -1.84 -36.75 16 18 C -0.23 -13.06 10.47 84.03 0.88 -12.18 16 19 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 20 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 21 N -0.98 -62.89 13.97 21.65 0.30 -62.59 16 22 Si 0.95 45.43 27.74 68.60 1.90 47.33 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 26 C 0.08 1.94 7.26 22.76 0.17 2.11 16 27 F -0.14 -4.61 16.33 44.97 0.73 -3.87 16 28 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 0.26 7.66 -2.39 -0.02 0.24 16 30 H 0.08 0.27 7.66 -2.39 -0.02 0.25 16 31 H 0.18 0.62 6.27 -2.91 -0.02 0.60 16 32 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 33 H 0.15 2.27 6.20 -2.91 -0.02 2.26 16 34 H 0.07 1.44 7.04 -2.39 -0.02 1.43 16 35 H 0.08 1.43 6.22 -2.39 -0.01 1.41 16 36 H 0.08 1.65 7.84 -2.39 -0.02 1.63 16 37 H 0.10 2.18 7.86 -2.39 -0.02 2.16 16 38 H 0.10 2.29 7.49 -2.39 -0.02 2.27 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.37 16.48 5.53 -92.71 -0.51 15.97 16 46 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -81.69 386.57 3.59 -78.10 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.44 Total: 20.21 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 6.96 Total: 15.23 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.95 Total: -116.37 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -2.50 Total: -40.62 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.73 Total: -3.87 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Total: -81.69 3.59 -78.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284876997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.561 kcal (2) G-P(sol) polarization free energy of solvation -81.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds