Wall clock time and date at job start Tue Mar 31 2020 23:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99792 * 2 1 4 4 C 1.47197 * 109.47121 * 180.02562 * 3 2 1 5 5 C 3.40055 * 161.18675 * 359.97438 * 2 1 3 6 6 C 4.78773 * 168.18448 * 359.97438 * 2 1 3 7 7 N 1.46900 * 109.47353 * 44.97662 * 6 5 4 8 8 C 1.46900 * 110.99957 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.43501 * 34.29827 * 8 7 6 10 10 C 1.54266 * 110.48752 * 271.75610 * 8 7 6 11 11 C 1.53869 * 106.60031 * 217.58456 * 10 8 7 12 12 C 1.54266 * 106.59800 * 359.97438 * 11 10 8 13 13 H 1.09007 * 110.48724 * 264.79935 * 12 11 10 14 14 C 1.53003 * 110.48569 * 142.29400 * 12 11 10 15 15 N 1.46500 * 109.47433 * 66.45486 * 14 12 11 16 16 C 1.34777 * 120.00227 * 180.02562 * 15 14 12 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.00014 * 180.02562 * 16 15 14 19 19 S 1.80998 * 109.47253 * 179.97438 * 18 16 15 20 20 C 1.76189 * 100.00412 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00027 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00385 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99438 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00107 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46951 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.46990 * 119.99937 * 24 22 20 27 27 H 1.48496 * 109.46852 * 239.99781 * 24 22 20 28 28 C 1.54894 * 110.48225 * 156.84017 * 8 7 6 29 29 H 1.09000 * 109.47242 * 299.99992 * 1 2 3 30 30 H 1.09007 * 109.47088 * 60.00279 * 1 2 3 31 31 H 1.08995 * 109.47456 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47204 * 59.99857 * 3 2 1 33 33 H 1.09001 * 109.47112 * 299.99657 * 3 2 1 34 34 H 1.09001 * 109.47627 * 284.97389 * 6 5 4 35 35 H 1.09006 * 109.47045 * 164.97736 * 6 5 4 36 36 H 1.00895 * 110.99954 * 303.95159 * 7 6 5 37 37 H 1.09001 * 110.03084 * 336.86639 * 10 8 7 38 38 H 1.08996 * 110.03108 * 98.24529 * 10 8 7 39 39 H 1.08999 * 110.04012 * 119.28327 * 11 10 8 40 40 H 1.09006 * 110.02998 * 240.67078 * 11 10 8 41 41 H 1.09002 * 109.47236 * 186.45449 * 14 12 11 42 42 H 1.08994 * 109.46816 * 306.45068 * 14 12 11 43 43 H 0.96999 * 119.99868 * 359.97438 * 15 14 12 44 44 H 1.09004 * 109.46716 * 299.99026 * 18 16 15 45 45 H 1.08994 * 109.47739 * 59.99488 * 18 16 15 46 46 H 0.97008 * 119.99790 * 180.02562 * 23 22 20 47 47 H 1.08996 * 110.75388 * 275.05913 * 28 8 7 48 48 H 1.08993 * 110.76071 * 38.44139 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4776 1.1893 -0.0006 5 6 4.6479 1.0966 -0.0005 6 6 6.1153 0.9803 -0.0004 7 7 6.5261 -0.0350 -0.9793 8 6 7.9879 -0.1782 -1.0074 9 1 8.4042 -0.0276 -0.0113 10 6 8.6089 0.8180 -2.0083 11 6 9.7788 0.0858 -2.6886 12 6 9.8284 -1.3295 -2.0769 13 1 10.5438 -1.3651 -1.2553 14 6 10.1907 -2.3624 -3.1459 15 7 11.5646 -2.1337 -3.6003 16 6 12.1025 -2.9284 -4.5466 17 8 11.4494 -3.8332 -5.0217 18 6 13.5159 -2.6934 -5.0136 19 16 13.9445 -3.9152 -6.2782 20 6 15.5976 -3.4202 -6.6343 21 1 16.0339 -2.5807 -6.1134 22 6 16.3387 -4.1084 -7.5849 23 7 15.8067 -5.1312 -8.2200 24 14 18.0915 -3.5840 -7.9618 25 1 18.4510 -2.4161 -7.1180 26 1 19.0176 -4.7082 -7.6725 27 1 18.1990 -3.2105 -9.3950 28 6 8.3856 -1.5708 -1.5564 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 6.4566 0.6869 0.9923 35 1 6.5559 1.9411 -0.2668 36 1 6.0794 -0.9200 -0.7915 37 1 7.8680 1.1102 -2.7525 38 1 8.9748 1.6985 -1.4804 39 1 9.6058 0.0228 -3.7630 40 1 10.7133 0.6112 -2.4913 41 1 10.1094 -3.3647 -2.7251 42 1 9.5080 -2.2664 -3.9901 43 1 12.0868 -1.4098 -3.2206 44 1 13.5977 -1.6910 -5.4340 45 1 14.1984 -2.7901 -4.1693 46 1 16.3247 -5.6125 -8.8841 47 1 8.3791 -2.3159 -0.7609 48 1 7.7253 -1.8680 -2.3710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316645445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:22 Heat of formation + Delta-G solvation = -44.860368 kcal Electronic energy + Delta-G solvation = -24893.324299 eV Core-core repulsion = 21075.336525 eV Total energy + Delta-G solvation = -3817.987774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.64006 -38.67434 -38.48154 -36.18915 -34.26549 -33.04631 -32.41190 -30.40969 -29.50058 -28.82558 -27.70128 -26.25709 -25.49002 -24.74417 -24.09463 -20.96897 -20.14930 -19.87431 -17.93309 -17.81617 -17.00602 -16.81911 -16.50290 -16.27643 -16.12474 -15.71482 -15.41398 -15.11008 -14.85941 -14.78931 -14.06765 -13.87599 -13.72951 -13.59834 -13.38833 -13.25896 -13.07751 -12.62560 -12.58532 -12.18713 -11.95964 -11.80026 -11.61984 -11.40598 -11.12621 -11.06224 -10.99972 -10.98659 -10.81623 -10.73221 -10.68054 -10.53699 -10.04910 -9.78548 -9.35248 -9.06120 -8.93278 -8.81745 -8.20475 -6.47701 -6.20106 -3.90250 1.89405 2.19693 3.07021 3.15229 3.22723 3.29607 3.34425 3.37165 3.65053 3.80301 4.03000 4.20691 4.22181 4.29904 4.59695 4.61854 4.72288 4.79474 4.82175 4.88712 4.92909 4.99541 5.07318 5.13837 5.14494 5.15213 5.19395 5.22229 5.25709 5.32640 5.39237 5.55263 5.63641 5.74210 5.77018 5.81674 5.92095 5.93442 5.99075 6.15802 6.17082 6.50577 6.56225 6.67878 6.87312 7.13032 7.61526 7.76506 8.37114 8.66840 9.25391 10.87437 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.001281 C = 0.001250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.367946 B =21854.773166 C =22395.730124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.178 3.822 4 C -0.182 4.182 5 C -0.146 4.146 6 C 0.170 3.830 7 N -0.680 5.680 8 C 0.082 3.918 9 H 0.054 0.946 10 C -0.115 4.115 11 C -0.121 4.121 12 C -0.100 4.100 13 H 0.081 0.919 14 C 0.129 3.871 15 N -0.738 5.738 16 C 0.530 3.470 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.117 4.117 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.348 0.652 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.070 0.930 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.960 16.282 21.171 36.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.103 3.897 4 C -0.184 4.184 5 C -0.147 4.147 6 C 0.042 3.958 7 N -0.311 5.311 8 C -0.028 4.028 9 H 0.072 0.928 10 C -0.153 4.153 11 C -0.159 4.159 12 C -0.120 4.120 13 H 0.100 0.900 14 C 0.005 3.995 15 N -0.392 5.392 16 C 0.316 3.684 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.156 4.156 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.167 0.833 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.937 14.890 19.710 35.818 hybrid contribution 2.037 1.547 1.341 2.888 sum -23.899 16.437 21.050 35.839 Atomic orbital electron populations 1.22808 0.80045 1.03388 1.00304 1.87977 1.20264 1.26827 1.95520 1.19052 0.83683 0.85510 1.01452 1.21657 0.92820 1.02419 1.01454 1.22164 0.93416 0.98185 1.00905 1.18900 0.84351 0.97913 0.94596 1.60517 1.07351 1.12137 1.51135 1.22436 0.86309 0.95934 0.98077 0.92792 1.22187 0.97381 0.97328 0.98435 1.22217 0.98347 0.94587 1.00722 1.22218 0.97012 0.94953 0.97789 0.90026 1.21305 0.83446 0.98278 0.96473 1.45987 1.15089 1.35491 1.42682 1.20299 0.88470 0.81271 0.78318 1.90703 1.62479 1.30788 1.55308 1.23528 0.94973 1.06670 1.05227 1.85403 1.16076 1.37838 1.44124 1.22913 0.98863 1.19485 1.27050 0.90903 1.24988 0.98975 0.94589 0.95014 1.70031 1.37087 1.18818 1.24366 0.86122 0.82587 0.78555 0.78266 1.19618 1.20573 1.20575 1.22701 0.96007 0.95705 1.01164 0.93712 0.93592 0.89114 0.90880 0.90705 0.92541 0.88464 0.83267 0.90396 0.92219 0.90975 0.91652 0.91700 0.91461 0.76926 0.89269 0.89290 0.92251 0.91153 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -3.15 10.66 -35.23 -0.38 -3.52 16 3 C 0.18 1.15 6.41 34.37 0.22 1.37 16 4 C -0.18 -1.63 13.73 -37.12 -0.51 -2.14 16 5 C -0.15 -1.28 13.60 -37.12 -0.50 -1.79 16 6 C 0.17 1.13 6.02 -6.61 -0.04 1.09 16 7 N -0.68 -4.96 6.27 -108.04 -0.68 -5.64 16 8 C 0.08 0.54 3.17 -66.05 -0.21 0.33 16 9 H 0.05 0.32 7.85 -51.93 -0.41 -0.09 16 10 C -0.12 -0.82 6.51 -25.62 -0.17 -0.99 16 11 C -0.12 -0.93 6.05 -25.62 -0.15 -1.09 16 12 C -0.10 -0.80 2.94 -88.76 -0.26 -1.06 16 13 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 14 C 0.13 1.48 4.99 -4.04 -0.02 1.46 16 15 N -0.74 -9.80 5.39 -60.29 -0.33 -10.12 16 16 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 17 O -0.52 -11.99 15.86 5.56 0.09 -11.90 16 18 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 21 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C -0.12 -0.84 5.74 -24.53 -0.14 -0.98 16 29 H 0.04 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.35 2.49 8.42 -39.29 -0.33 2.16 16 37 H 0.08 0.65 8.04 -51.93 -0.42 0.24 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.66 7.77 -51.93 -0.40 0.25 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 43 H 0.40 4.11 8.32 -40.82 -0.34 3.77 16 44 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 418.57 15.07 6.31 6.31 Total: -1.00 -36.24 418.57 -10.02 -46.26 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.20 Total: 0.17 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.34 Total: -8.54 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.27 Total: -41.36 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.29 Total: -15.42 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.24 -10.02 -46.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316645445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.396 kcal (2) G-P(sol) polarization free energy of solvation -36.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds