Wall clock time and date at job start Tue Mar 31 2020 23:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99667 * 2 1 4 4 H 1.48500 * 109.47092 * 240.00130 * 3 2 1 5 5 H 1.48505 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47071 * 119.99738 * 3 2 1 7 7 C 1.38809 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99840 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00392 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47420 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.49771 * 55.06591 * 11 10 9 13 13 C 1.53045 * 109.50011 * 175.16231 * 11 10 9 14 14 C 1.53039 * 109.54138 * 181.31803 * 13 11 10 15 15 C 1.53622 * 109.24027 * 298.51211 * 14 13 11 16 16 N 1.46929 * 108.54600 * 54.85595 * 15 14 13 17 17 C 1.34774 * 120.63102 * 126.36861 * 16 15 14 18 18 O 1.21561 * 119.99670 * 185.58862 * 17 16 15 19 19 C 1.47857 * 120.00074 * 5.58260 * 17 16 15 20 20 C 1.40626 * 119.75492 * 222.17342 * 19 17 16 21 21 C 1.35727 * 120.83420 * 180.02562 * 20 19 17 22 22 C 1.40705 * 120.08341 * 0.02562 * 21 20 19 23 23 N 1.33801 * 120.85705 * 179.97438 * 22 21 20 24 24 C 1.31328 * 119.76117 * 179.97438 * 23 22 21 25 25 C 1.39752 * 120.71361 * 0.02562 * 24 23 22 26 26 N 1.31278 * 120.67360 * 359.97230 * 25 24 23 27 27 C 1.33819 * 119.73746 * 0.02709 * 26 25 24 28 28 C 1.38411 * 119.75821 * 42.15229 * 19 17 16 29 29 C 1.46929 * 118.73433 * 306.09616 * 16 15 14 30 30 H 0.96997 * 119.99990 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99738 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47093 * 59.99971 * 10 9 7 33 33 H 1.09004 * 109.47372 * 300.00176 * 10 9 7 34 34 H 1.09007 * 109.45803 * 301.33946 * 13 11 10 35 35 H 1.09002 * 109.46052 * 61.30944 * 13 11 10 36 36 H 1.09005 * 109.49549 * 58.58723 * 14 13 11 37 37 H 1.08997 * 109.49948 * 178.65007 * 14 13 11 38 38 H 1.08993 * 109.74103 * 295.11732 * 15 14 13 39 39 H 1.08996 * 109.66306 * 174.54819 * 15 14 13 40 40 H 1.08003 * 119.58362 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.95861 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.64467 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.66548 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.24444 * 0.02562 * 28 19 17 45 45 H 1.09004 * 109.58431 * 173.64560 * 29 16 15 46 46 H 1.08997 * 109.58472 * 293.92822 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8196 0.0012 12 1 0.3801 -4.7140 -0.8410 13 6 1.8248 -6.1421 -0.1205 14 6 0.8294 -7.3041 -0.1530 15 6 0.0320 -7.3244 1.1599 16 7 -0.5867 -6.0055 1.3514 17 6 -1.9125 -5.8936 1.5663 18 8 -2.4285 -4.7944 1.6219 19 6 -2.7393 -7.1079 1.7342 20 6 -3.9980 -7.1866 1.1121 21 6 -4.7753 -8.2905 1.2520 22 6 -4.3264 -9.3755 2.0272 23 7 -5.0801 -10.4710 2.1759 24 6 -4.6398 -11.4714 2.9039 25 6 -3.3906 -11.4051 3.5270 26 7 -2.6326 -10.3413 3.3963 27 6 -3.0592 -9.3088 2.6596 28 6 -2.2685 -8.1588 2.5021 29 6 0.2685 -4.8115 1.3102 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6849 -3.7144 0.8905 33 1 2.6850 -3.7145 -0.8894 34 1 2.4113 -6.1404 -1.0394 35 1 2.4904 -6.2582 0.7349 36 1 0.1476 -7.1756 -0.9937 37 1 1.3705 -8.2437 -0.2638 38 1 0.7006 -7.5388 1.9935 39 1 -0.7442 -8.0877 1.1057 40 1 -4.3511 -6.3579 0.5163 41 1 -5.7399 -8.3357 0.7684 42 1 -5.2495 -12.3549 3.0223 43 1 -3.0453 -12.2375 4.1222 44 1 -1.3012 -8.0941 2.9781 45 1 -0.3517 -3.9162 1.3553 46 1 0.9544 -4.8239 2.1572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317161939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:31 Heat of formation + Delta-G solvation = 51.401653 kcal Electronic energy + Delta-G solvation = -28825.671416 eV Core-core repulsion = 24908.706677 eV Total energy + Delta-G solvation = -3916.964739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85701 -40.34668 -38.01294 -37.09438 -35.30220 -34.89709 -33.03000 -31.72817 -31.32691 -31.07771 -29.62229 -26.58030 -25.59954 -25.34427 -24.38496 -23.24666 -22.71986 -21.50201 -20.80367 -19.66079 -18.86621 -18.18819 -17.37126 -17.07313 -16.69198 -16.02201 -15.51492 -15.28838 -15.07608 -14.74676 -14.68568 -14.51113 -14.36978 -13.97377 -13.63772 -13.47652 -13.03185 -12.92388 -12.88097 -12.61722 -12.31641 -12.19940 -12.16064 -12.11969 -12.08119 -11.43812 -11.11002 -11.01517 -10.81436 -10.66143 -10.41487 -10.30637 -10.04023 -9.87896 -9.59314 -9.54901 -9.37762 -8.93872 -8.83376 -8.56695 -6.87204 -5.69474 -2.99448 -0.32671 0.04635 1.42662 2.10076 2.77849 2.97038 3.47874 3.51726 3.51797 3.53525 3.62300 3.68783 3.80810 4.20432 4.34945 4.50563 4.59992 4.63465 4.72497 4.79690 4.86159 4.91435 4.98029 5.17699 5.25417 5.30123 5.35413 5.43186 5.60402 5.62778 5.63469 5.71231 5.78430 5.81121 5.86860 5.95536 6.08686 6.11924 6.16950 6.20069 6.38625 6.52480 6.59393 6.77338 6.79660 6.88371 7.25941 7.37365 7.74247 8.11371 8.48250 9.59118 10.16924 10.51127 11.52727 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021824 B = 0.002344 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.660097 B =11942.151997 C =12764.216639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.113 4.113 14 C -0.133 4.133 15 C 0.096 3.904 16 N -0.602 5.602 17 C 0.552 3.448 18 O -0.514 6.514 19 C -0.093 4.093 20 C -0.054 4.054 21 C -0.086 4.086 22 C 0.089 3.911 23 N -0.426 5.426 24 C 0.081 3.919 25 C 0.074 3.926 26 N -0.418 5.418 27 C 0.071 3.929 28 C -0.051 4.051 29 C 0.120 3.880 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.176 0.824 43 H 0.177 0.823 44 H 0.150 0.850 45 H 0.106 0.894 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 -28.537 4.807 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.151 4.151 14 C -0.171 4.171 15 C -0.027 4.027 16 N -0.335 5.335 17 C 0.338 3.662 18 O -0.389 6.389 19 C -0.098 4.098 20 C -0.074 4.074 21 C -0.105 4.105 22 C -0.034 4.034 23 N -0.140 5.140 24 C -0.095 4.095 25 C -0.103 4.103 26 N -0.133 5.133 27 C -0.052 4.052 28 C -0.071 4.071 29 C -0.001 4.001 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.193 0.807 43 H 0.194 0.806 44 H 0.167 0.833 45 H 0.124 0.876 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.700 -27.557 4.746 28.755 hybrid contribution 0.204 0.719 0.072 0.751 sum -6.496 -26.839 4.817 28.031 Atomic orbital electron populations 1.69665 1.05050 1.25767 1.57314 1.24763 0.95502 0.97679 1.02980 0.86280 0.78498 0.83677 0.77771 1.21330 1.21711 1.21299 1.19152 0.90934 0.84182 1.43121 0.91285 1.42408 1.05949 0.99927 1.89504 1.20629 0.92944 0.85141 0.98032 1.21686 0.97990 0.95175 0.97784 0.90677 1.21534 0.97459 0.93671 1.02414 1.21987 0.98615 0.99226 0.97283 1.22170 0.97611 0.84599 0.98292 1.48105 1.06615 1.08439 1.70328 1.18202 0.81926 0.88372 0.77675 1.90900 1.71634 1.26850 1.49547 1.20143 0.95903 0.94390 0.99392 1.21022 0.91623 0.97949 0.96829 1.20719 1.00790 0.91076 0.97953 1.19669 0.91891 0.94171 0.97691 1.68735 1.32387 0.99588 1.13321 1.24146 0.95197 0.97671 0.92504 1.24097 0.92052 0.96606 0.97499 1.68674 1.32875 0.99587 1.12115 1.19382 0.93759 0.94760 0.97311 1.21349 0.99385 0.89709 0.96609 1.21807 0.93243 0.87611 0.97452 0.93421 0.78066 0.96238 0.96034 0.91422 0.91678 0.91432 0.90841 0.90915 0.89652 0.83448 0.83528 0.80680 0.80626 0.83264 0.87604 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.90 5.38 -59.92 -0.32 -19.22 16 10 C 0.16 3.20 5.65 -4.05 -0.02 3.18 16 11 C -0.11 -1.71 2.38 -90.50 -0.21 -1.93 16 12 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 13 C -0.11 -1.35 5.16 -26.69 -0.14 -1.48 16 14 C -0.13 -1.32 6.10 -26.39 -0.16 -1.48 16 15 C 0.10 0.97 4.96 -3.49 -0.02 0.95 16 16 N -0.60 -8.34 2.97 -173.61 -0.51 -8.86 16 17 C 0.55 8.45 7.28 -12.33 -0.09 8.36 16 18 O -0.51 -10.21 16.36 5.31 0.09 -10.13 16 19 C -0.09 -1.12 5.07 -105.00 -0.53 -1.66 16 20 C -0.05 -0.58 9.54 -39.58 -0.38 -0.96 16 21 C -0.09 -0.84 9.95 -39.55 -0.39 -1.23 16 22 C 0.09 0.95 6.59 -84.72 -0.56 0.39 16 23 N -0.43 -4.06 10.46 -10.74 -0.11 -4.17 16 24 C 0.08 0.50 11.21 -17.20 -0.19 0.31 16 25 C 0.07 0.46 11.21 -17.22 -0.19 0.27 16 26 N -0.42 -4.01 10.46 -10.81 -0.11 -4.13 16 27 C 0.07 0.76 6.58 -84.82 -0.56 0.20 16 28 C -0.05 -0.54 7.35 -38.69 -0.28 -0.82 16 29 C 0.12 1.98 5.52 -3.71 -0.02 1.96 16 30 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 31 H 0.39 10.63 6.89 -40.82 -0.28 10.35 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 39 H 0.09 0.78 4.83 -51.93 -0.25 0.53 16 40 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 41 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.18 0.38 8.06 -52.49 -0.42 -0.05 16 43 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 44 H 0.15 1.43 6.73 -52.49 -0.35 1.08 16 45 H 0.11 2.19 6.20 -51.93 -0.32 1.87 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -35.96 375.90 -9.86 -45.82 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.25 Total: 6.98 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -4.00 Total: -1.49 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.34 Total: -64.70 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.96 -9.86 -45.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317161939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.222 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds