Wall clock time and date at job start Tue Mar 31 2020 23:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99667 * 2 1 4 4 H 1.48500 * 109.47092 * 240.00130 * 3 2 1 5 5 H 1.48505 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47071 * 119.99738 * 3 2 1 7 7 C 1.38809 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99840 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00392 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47420 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.49771 * 55.06591 * 11 10 9 13 13 C 1.53045 * 109.50011 * 175.16231 * 11 10 9 14 14 C 1.53039 * 109.54138 * 181.31803 * 13 11 10 15 15 C 1.53622 * 109.24027 * 298.51211 * 14 13 11 16 16 N 1.46929 * 108.54600 * 54.85595 * 15 14 13 17 17 C 1.34774 * 120.63102 * 126.36861 * 16 15 14 18 18 O 1.21561 * 119.99670 * 185.58862 * 17 16 15 19 19 C 1.47857 * 120.00074 * 5.58260 * 17 16 15 20 20 C 1.40626 * 119.75492 * 222.17342 * 19 17 16 21 21 C 1.35727 * 120.83420 * 180.02562 * 20 19 17 22 22 C 1.40705 * 120.08341 * 0.02562 * 21 20 19 23 23 N 1.33801 * 120.85705 * 179.97438 * 22 21 20 24 24 C 1.31328 * 119.76117 * 179.97438 * 23 22 21 25 25 C 1.39752 * 120.71361 * 0.02562 * 24 23 22 26 26 N 1.31278 * 120.67360 * 359.97230 * 25 24 23 27 27 C 1.33819 * 119.73746 * 0.02709 * 26 25 24 28 28 C 1.38411 * 119.75821 * 42.15229 * 19 17 16 29 29 C 1.46929 * 118.73433 * 306.09616 * 16 15 14 30 30 H 0.96997 * 119.99990 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99738 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47093 * 59.99971 * 10 9 7 33 33 H 1.09004 * 109.47372 * 300.00176 * 10 9 7 34 34 H 1.09007 * 109.45803 * 301.33946 * 13 11 10 35 35 H 1.09002 * 109.46052 * 61.30944 * 13 11 10 36 36 H 1.09005 * 109.49549 * 58.58723 * 14 13 11 37 37 H 1.08997 * 109.49948 * 178.65007 * 14 13 11 38 38 H 1.08993 * 109.74103 * 295.11732 * 15 14 13 39 39 H 1.08996 * 109.66306 * 174.54819 * 15 14 13 40 40 H 1.08003 * 119.58362 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.95861 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.64467 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.66548 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.24444 * 0.02562 * 28 19 17 45 45 H 1.09004 * 109.58431 * 173.64560 * 29 16 15 46 46 H 1.08997 * 109.58472 * 293.92822 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8196 0.0012 12 1 0.3801 -4.7140 -0.8410 13 6 1.8248 -6.1421 -0.1205 14 6 0.8294 -7.3041 -0.1530 15 6 0.0320 -7.3244 1.1599 16 7 -0.5867 -6.0055 1.3514 17 6 -1.9125 -5.8936 1.5663 18 8 -2.4285 -4.7944 1.6219 19 6 -2.7393 -7.1079 1.7342 20 6 -3.9980 -7.1866 1.1121 21 6 -4.7753 -8.2905 1.2520 22 6 -4.3264 -9.3755 2.0272 23 7 -5.0801 -10.4710 2.1759 24 6 -4.6398 -11.4714 2.9039 25 6 -3.3906 -11.4051 3.5270 26 7 -2.6326 -10.3413 3.3963 27 6 -3.0592 -9.3088 2.6596 28 6 -2.2685 -8.1588 2.5021 29 6 0.2685 -4.8115 1.3102 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6849 -3.7144 0.8905 33 1 2.6850 -3.7145 -0.8894 34 1 2.4113 -6.1404 -1.0394 35 1 2.4904 -6.2582 0.7349 36 1 0.1476 -7.1756 -0.9937 37 1 1.3705 -8.2437 -0.2638 38 1 0.7006 -7.5388 1.9935 39 1 -0.7442 -8.0877 1.1057 40 1 -4.3511 -6.3579 0.5163 41 1 -5.7399 -8.3357 0.7684 42 1 -5.2495 -12.3549 3.0223 43 1 -3.0453 -12.2375 4.1222 44 1 -1.3012 -8.0941 2.9781 45 1 -0.3517 -3.9162 1.3553 46 1 0.9544 -4.8239 2.1572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317161939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:30 Heat of formation + Delta-G solvation = 26.013173 kcal Electronic energy + Delta-G solvation = -28826.772343 eV Core-core repulsion = 24908.706677 eV Total energy + Delta-G solvation = -3918.065667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.56497 -41.42632 -39.11457 -38.08348 -36.67086 -35.88182 -34.55541 -33.13035 -32.24979 -31.88959 -31.17417 -27.61875 -27.12588 -26.14949 -25.25791 -24.89047 -23.56778 -22.70737 -22.01994 -20.78720 -19.62794 -19.22323 -18.94572 -18.12650 -17.67621 -17.10894 -16.71448 -16.38991 -16.17202 -15.91814 -15.64511 -15.47568 -15.41344 -15.25400 -15.07813 -14.70454 -14.27303 -14.15288 -14.09566 -13.87398 -13.51955 -13.09339 -13.03246 -12.91910 -12.86687 -12.78507 -12.73165 -12.58698 -12.21921 -12.10347 -11.94477 -11.86094 -11.61838 -11.35119 -11.09516 -10.94801 -10.16779 -10.11426 -9.78921 -9.66361 -9.01486 -7.94524 -5.25184 -1.02736 -0.63515 0.70945 1.25044 1.44781 1.49241 1.55451 1.71215 1.95994 2.55341 2.84275 2.94736 3.06021 3.16114 3.33552 3.38091 3.65484 3.72926 3.83180 3.86877 3.88973 3.96102 4.03704 4.13540 4.19458 4.25978 4.40783 4.43316 4.54750 4.57282 4.65682 4.74190 4.76286 4.83882 4.84888 4.88818 5.00324 5.03566 5.10506 5.15014 5.20389 5.32468 5.41322 5.45916 5.48555 5.50281 6.19438 6.24363 6.25932 6.65874 6.94254 7.31293 8.08128 8.29961 9.28783 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021824 B = 0.002344 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.660097 B =11942.151997 C =12764.216639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.158 3.842 11 C -0.094 4.094 12 H 0.050 0.950 13 C -0.105 4.105 14 C -0.127 4.127 15 C 0.092 3.908 16 N -0.597 5.597 17 C 0.548 3.452 18 O -0.576 6.576 19 C -0.108 4.108 20 C -0.068 4.068 21 C -0.080 4.080 22 C 0.075 3.925 23 N -0.453 5.453 24 C 0.097 3.903 25 C 0.089 3.911 26 N -0.442 5.442 27 C 0.055 3.945 28 C -0.039 4.039 29 C 0.127 3.873 30 H 0.250 0.750 31 H 0.370 0.630 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.140 0.860 41 H 0.162 0.838 42 H 0.222 0.778 43 H 0.223 0.777 44 H 0.159 0.841 45 H 0.053 0.947 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 -32.885 5.729 33.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.032 3.968 11 C -0.114 4.114 12 H 0.069 0.931 13 C -0.143 4.143 14 C -0.165 4.165 15 C -0.029 4.029 16 N -0.328 5.328 17 C 0.337 3.663 18 O -0.456 6.456 19 C -0.113 4.113 20 C -0.088 4.088 21 C -0.099 4.099 22 C -0.047 4.047 23 N -0.167 5.167 24 C -0.079 4.079 25 C -0.088 4.088 26 N -0.156 5.156 27 C -0.067 4.067 28 C -0.058 4.058 29 C 0.005 3.995 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.158 0.842 41 H 0.180 0.820 42 H 0.238 0.762 43 H 0.239 0.761 44 H 0.176 0.824 45 H 0.072 0.928 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.258 -31.949 5.644 32.867 hybrid contribution -0.248 1.754 -0.120 1.775 sum -5.506 -30.195 5.524 31.186 Atomic orbital electron populations 1.69867 1.06899 1.26110 1.59478 1.25684 0.96363 1.01515 1.03760 0.85148 0.77082 0.78784 0.78355 1.20058 1.22418 1.20130 1.19643 0.91602 0.85297 1.41226 0.90187 1.42682 1.05549 1.01494 1.89436 1.20843 0.93562 0.84139 0.98302 1.21540 0.97038 0.96389 0.96433 0.93108 1.21513 0.97662 0.91454 1.03691 1.21986 0.98064 0.99906 0.96520 1.22504 0.98325 0.82551 0.99525 1.48166 1.06142 1.09188 1.69349 1.18771 0.82415 0.88685 0.76457 1.90858 1.72850 1.29398 1.52538 1.19804 0.96151 0.93643 1.01740 1.20970 0.91746 0.98477 0.97622 1.20836 1.00979 0.90506 0.97568 1.19792 0.92215 0.94813 0.97917 1.68799 1.32813 1.00126 1.14977 1.25017 0.95387 0.97720 0.89804 1.24958 0.91393 0.96389 0.96079 1.68721 1.33972 1.00271 1.12664 1.19393 0.93899 0.95238 0.98152 1.21349 0.99657 0.89260 0.95584 1.21489 0.92793 0.87105 0.98159 0.94132 0.79798 0.95275 0.95442 0.90457 0.89926 0.92544 0.87105 0.88427 0.88311 0.84245 0.82038 0.76173 0.76104 0.82366 0.92800 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.62 13.06 21.65 0.28 -63.34 16 2 C -0.08 -4.91 5.50 84.86 0.47 -4.45 16 3 Si 0.98 48.04 29.55 68.60 2.03 50.07 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.75 -40.25 5.38 -343.48 -1.85 -42.10 16 10 C 0.16 6.39 5.65 86.38 0.49 6.88 16 11 C -0.09 -3.10 2.38 -10.72 -0.03 -3.13 16 12 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 13 C -0.11 -2.30 5.16 30.62 0.16 -2.14 16 14 C -0.13 -2.20 6.10 30.82 0.19 -2.01 16 15 C 0.09 1.70 4.96 86.51 0.43 2.13 16 16 N -0.60 -17.19 2.97 -821.47 -2.44 -19.63 16 17 C 0.55 18.21 7.28 86.79 0.63 18.84 16 18 O -0.58 -25.56 16.36 -3.91 -0.06 -25.62 16 19 C -0.11 -2.76 5.07 -20.11 -0.10 -2.86 16 20 C -0.07 -1.58 9.54 22.27 0.21 -1.37 16 21 C -0.08 -1.58 9.95 22.29 0.22 -1.36 16 22 C 0.07 1.50 6.59 40.32 0.27 1.76 16 23 N -0.45 -7.49 10.46 -187.89 -1.96 -9.45 16 24 C 0.10 0.79 11.21 85.13 0.95 1.74 16 25 C 0.09 0.71 11.21 85.14 0.95 1.66 16 26 N -0.44 -7.17 10.46 -188.12 -1.97 -9.14 16 27 C 0.06 1.10 6.58 40.25 0.27 1.36 16 28 C -0.04 -0.81 7.35 22.85 0.17 -0.64 16 29 C 0.13 4.43 5.52 86.36 0.48 4.91 16 30 H 0.25 15.88 8.31 -92.71 -0.77 15.11 16 31 H 0.37 21.91 6.89 -92.71 -0.64 21.27 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.39 8.13 -2.39 -0.02 1.37 16 39 H 0.10 1.63 4.83 -2.39 -0.01 1.62 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 41 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.22 -0.36 8.06 -2.91 -0.02 -0.39 16 43 H 0.22 -0.38 8.06 -2.91 -0.02 -0.41 16 44 H 0.16 2.86 6.73 -2.91 -0.02 2.84 16 45 H 0.05 2.47 6.20 -2.38 -0.01 2.45 16 46 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -84.70 375.90 1.00 -83.70 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.37 Total: 27.66 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 6.59 Total: 7.86 kcal Atomic # 7 Polarization: -135.73 SS G_CDS: -7.93 Total: -143.66 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.06 Total: -25.62 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -84.70 1.00 -83.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317161939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.714 kcal (2) G-P(sol) polarization free energy of solvation -84.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds