Wall clock time and date at job start Tue Mar 31 2020 23:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81401 * 103.00011 * 2 1 4 4 H 1.09008 * 109.18482 * 304.56728 * 3 2 1 5 5 C 1.47096 * 109.33151 * 185.00048 * 3 2 1 6 6 C 1.52562 * 114.32711 * 176.93511 * 5 3 2 7 7 C 1.50884 * 109.35766 * 85.01531 * 6 5 3 8 8 C 1.53941 * 110.09221 * 268.11316 * 7 6 5 9 9 N 1.47606 * 112.14615 * 40.56128 * 8 7 6 10 10 C 1.34781 * 118.64666 * 222.11162 * 9 8 7 11 11 O 1.21341 * 120.00216 * 174.91096 * 10 9 8 12 12 C 1.49448 * 119.99528 * 354.90759 * 10 9 8 13 13 O 1.21348 * 120.00328 * 275.49171 * 12 10 9 14 14 N 1.34781 * 120.00242 * 95.49726 * 12 10 9 15 15 C 1.46496 * 120.00302 * 185.02104 * 14 12 10 16 16 C 1.52994 * 109.47088 * 175.01919 * 15 14 12 17 17 C 1.50694 * 115.55222 * 279.45644 * 16 15 14 18 18 H 1.07999 * 120.00013 * 95.17257 * 17 16 15 19 19 C 1.37880 * 120.00259 * 275.17363 * 17 16 15 20 20 N 1.31519 * 119.99952 * 5.12735 * 19 17 16 21 21 Si 1.86797 * 120.00071 * 185.13354 * 19 17 16 22 22 H 1.48502 * 109.47293 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47377 * 119.99867 * 21 19 17 24 24 H 1.48507 * 109.47154 * 239.99729 * 21 19 17 25 25 C 1.53006 * 117.49700 * 133.75203 * 16 15 14 26 26 C 1.53007 * 117.49974 * 65.12994 * 16 15 14 27 27 C 1.44581 * 122.71173 * 42.13556 * 9 8 7 28 28 H 1.09002 * 109.46902 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47164 * 299.99874 * 1 2 3 30 30 H 1.09006 * 109.47503 * 60.00163 * 1 2 3 31 31 H 1.09004 * 108.50927 * 55.68068 * 5 3 2 32 32 H 1.08994 * 108.39002 * 298.10175 * 5 3 2 33 33 H 1.08998 * 109.49694 * 325.04757 * 6 5 3 34 34 H 1.09010 * 109.49159 * 204.97836 * 6 5 3 35 35 H 1.08998 * 109.36779 * 147.91948 * 7 6 5 36 36 H 1.09003 * 109.26147 * 28.23561 * 7 6 5 37 37 H 1.08996 * 108.94793 * 161.25157 * 8 7 6 38 38 H 1.09001 * 108.94754 * 279.88145 * 8 7 6 39 39 H 0.97000 * 119.99299 * 5.01850 * 14 12 10 40 40 H 1.08997 * 109.47101 * 295.02586 * 15 14 12 41 41 H 1.08997 * 109.47105 * 55.02010 * 15 14 12 42 42 H 0.96993 * 119.99668 * 185.00098 * 20 19 17 43 43 H 1.08997 * 117.50124 * 359.97438 * 25 16 15 44 44 H 1.09000 * 117.49885 * 145.02421 * 25 16 15 45 45 H 1.08995 * 117.50188 * 214.97712 * 26 16 15 46 46 H 1.08998 * 117.49257 * 359.97438 * 26 16 15 47 47 H 1.08999 * 109.45350 * 149.23542 * 27 9 8 48 48 H 1.08994 * 109.42742 * 29.29852 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7334 2.2480 -0.8478 5 6 3.6788 1.9309 -0.1210 6 6 4.1436 3.3815 -0.2067 7 6 4.2905 3.9427 1.1862 8 6 2.9795 4.6202 1.6244 9 7 1.7900 3.8505 1.2104 10 6 0.7289 4.5177 0.7150 11 8 -0.2247 3.9051 0.2817 12 6 0.7268 6.0121 0.6995 13 8 0.3796 6.6287 1.6853 14 7 1.1105 6.6751 -0.4094 15 6 1.2140 8.1363 -0.3903 16 6 1.7834 8.6247 -1.7237 17 6 3.2804 8.5265 -1.8663 18 1 3.7217 7.6662 -2.3474 19 6 4.0866 9.5349 -1.3824 20 7 3.5583 10.5328 -0.7080 21 14 5.9292 9.4839 -1.6850 22 1 6.2696 8.2656 -2.4629 23 1 6.3391 10.6898 -2.4485 24 1 6.6440 9.4555 -0.3835 25 6 1.0849 9.8063 -2.3997 26 6 0.9378 8.3976 -2.9785 27 6 1.7160 2.4104 1.3149 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0126 1.4070 -1.0167 32 1 4.1500 1.4672 0.7456 33 1 3.4085 3.9670 -0.7589 34 1 5.1043 3.4259 -0.7199 35 1 5.0974 4.6754 1.1974 36 1 4.5275 3.1333 1.8768 37 1 2.9775 4.7183 2.7100 38 1 2.9295 5.6146 1.1808 39 1 1.3180 6.1847 -1.2201 40 1 0.2253 8.5687 -0.2371 41 1 1.8743 8.4431 0.4209 42 1 4.1135 11.2782 -0.4303 43 1 0.2196 10.2355 -1.8947 44 1 1.7082 10.5130 -2.9477 45 1 1.4643 8.1776 -3.9072 46 1 -0.0239 7.8999 -2.8540 47 1 0.6825 2.1118 1.4906 48 1 2.3369 2.0747 2.1454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324829062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:25 Heat of formation + Delta-G solvation = -65.810451 kcal Electronic energy + Delta-G solvation = -28971.211873 eV Core-core repulsion = 25152.315635 eV Total energy + Delta-G solvation = -3818.896237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.15562 -40.22946 -38.79631 -38.42914 -35.24527 -35.17443 -33.94945 -33.78511 -29.95968 -29.25421 -28.05145 -27.31223 -26.65312 -24.72565 -23.06797 -22.52840 -21.56052 -21.32268 -20.45849 -19.19677 -18.28959 -18.02657 -17.62613 -17.42396 -16.69597 -16.62023 -16.08774 -16.03484 -15.61564 -15.50704 -15.24753 -15.14816 -14.77479 -14.55090 -14.50129 -14.37542 -14.17930 -13.73640 -13.45286 -13.43535 -13.35730 -12.97015 -12.82059 -12.79332 -12.56815 -12.33860 -12.32156 -12.05747 -11.82655 -11.61312 -11.52048 -11.47261 -11.14997 -10.89382 -10.76132 -10.46297 -10.14243 -10.05902 -10.02029 -8.73370 -8.08868 -6.21737 0.57004 0.89580 1.01316 1.43812 1.46183 1.49034 1.57346 1.62715 2.32702 2.45555 3.20433 3.21917 3.48140 3.52489 3.61552 3.83759 3.91915 4.11213 4.16357 4.19139 4.25810 4.32148 4.36500 4.42545 4.51584 4.58006 4.58981 4.63857 4.68146 4.83375 4.88399 4.92732 4.97431 4.99010 5.07274 5.13499 5.21515 5.25318 5.26842 5.30996 5.43088 5.56938 5.62842 5.79252 5.79914 6.28827 6.37067 6.54799 6.82070 6.88466 7.48539 8.99422 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013129 B = 0.003610 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.210971 B = 7753.637383 C = 8683.820630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.260 6.260 3 C -0.056 4.056 4 H 0.071 0.929 5 C -0.100 4.100 6 C -0.110 4.110 7 C -0.122 4.122 8 C 0.097 3.903 9 N -0.571 5.571 10 C 0.516 3.484 11 O -0.539 6.539 12 C 0.509 3.491 13 O -0.558 6.558 14 N -0.677 5.677 15 C 0.177 3.823 16 C 0.006 3.994 17 C -0.501 4.501 18 H 0.062 0.938 19 C 0.029 3.971 20 N -0.905 5.905 21 Si 0.945 3.055 22 H -0.262 1.262 23 H -0.288 1.288 24 H -0.285 1.285 25 C -0.155 4.155 26 C -0.181 4.181 27 C 0.122 3.878 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.411 0.589 40 H 0.038 0.962 41 H 0.049 0.951 42 H 0.259 0.741 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 -18.830 2.480 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.032 6.032 3 C -0.186 4.186 4 H 0.090 0.910 5 C -0.139 4.139 6 C -0.150 4.150 7 C -0.160 4.160 8 C -0.025 4.025 9 N -0.304 5.304 10 C 0.298 3.702 11 O -0.416 6.416 12 C 0.290 3.710 13 O -0.437 6.437 14 N -0.328 5.328 15 C 0.054 3.946 16 C 0.005 3.995 17 C -0.538 4.538 18 H 0.080 0.920 19 C -0.172 4.172 20 N -0.543 5.543 21 Si 0.771 3.229 22 H -0.186 1.186 23 H -0.214 1.214 24 H -0.211 1.211 25 C -0.193 4.193 26 C -0.218 4.218 27 C -0.002 4.002 28 H 0.135 0.865 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.247 0.753 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.145 -19.507 3.108 19.786 hybrid contribution -0.156 1.652 -0.503 1.734 sum 0.988 -17.854 2.606 18.071 Atomic orbital electron populations 1.23450 0.92764 1.07187 1.05253 1.86735 1.09028 1.09652 1.97802 1.22741 1.01368 0.93808 1.00690 0.91004 1.20263 0.91771 0.97561 1.04260 1.21047 1.02062 0.94609 0.97265 1.21768 0.94937 1.01832 0.97429 1.22331 0.84592 0.94373 1.01197 1.47785 1.14253 1.07486 1.60907 1.20324 0.83763 0.87832 0.78296 1.90740 1.35564 1.68556 1.46768 1.20351 0.78143 0.88521 0.84020 1.90769 1.48844 1.68676 1.35411 1.46000 1.64829 1.08757 1.13173 1.20863 0.97542 0.77038 0.99171 1.19070 0.92991 0.99398 0.87993 1.20661 0.89399 1.06013 1.37743 0.91958 1.25624 1.01979 0.95656 0.93909 1.70122 1.37339 1.09726 1.37078 0.85713 0.81342 0.78152 0.77682 1.18599 1.21396 1.21064 1.22456 1.01030 0.91151 1.04652 1.22998 1.00705 0.99553 0.98525 1.22052 1.03191 0.77393 0.97547 0.86454 0.90312 0.90907 0.91001 0.89628 0.93277 0.89709 0.89156 0.88716 0.89577 0.91664 0.75290 0.94406 0.93277 0.93168 0.91051 0.91563 0.89414 0.89499 0.90424 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 10.43 113.37 1.18 -0.76 16 2 S -0.26 -4.80 21.74 -56.49 -1.23 -6.03 16 3 C -0.06 -1.08 2.54 29.39 0.07 -1.01 16 4 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.10 -1.62 4.38 28.61 0.13 -1.50 16 6 C -0.11 -1.95 5.51 29.76 0.16 -1.79 16 7 C -0.12 -2.00 5.71 30.22 0.17 -1.83 16 8 C 0.10 2.16 5.94 86.49 0.51 2.67 16 9 N -0.57 -13.98 2.24 -819.77 -1.84 -15.81 16 10 C 0.52 16.54 7.45 87.27 0.65 17.19 16 11 O -0.54 -19.13 16.59 -3.22 -0.05 -19.18 16 12 C 0.51 18.97 5.49 87.27 0.48 19.45 16 13 O -0.56 -24.58 17.11 -3.24 -0.06 -24.63 16 14 N -0.68 -24.78 5.48 -464.43 -2.55 -27.32 16 15 C 0.18 7.64 5.57 86.38 0.48 8.12 16 16 C 0.01 0.28 1.36 -52.93 -0.07 0.21 16 17 C -0.50 -24.10 8.82 25.60 0.23 -23.87 16 18 H 0.06 2.93 7.82 -2.91 -0.02 2.90 16 19 C 0.03 1.46 5.40 84.65 0.46 1.92 16 20 N -0.91 -48.45 12.90 21.45 0.28 -48.18 16 21 Si 0.94 39.73 29.54 68.60 2.03 41.76 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 C -0.15 -6.71 9.37 30.60 0.29 -6.42 16 26 C -0.18 -6.84 9.83 30.60 0.30 -6.54 16 27 C 0.12 2.43 4.64 87.37 0.41 2.84 16 28 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.32 6.85 -2.39 -0.02 1.31 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 32 H 0.09 1.16 7.35 -2.39 -0.02 1.14 16 33 H 0.05 1.09 7.48 -2.39 -0.02 1.08 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.35 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.13 7.31 -2.39 -0.02 1.11 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.84 6.34 -2.39 -0.02 1.83 16 39 H 0.41 13.58 8.40 -92.71 -0.78 12.80 16 40 H 0.04 1.66 7.94 -2.39 -0.02 1.64 16 41 H 0.05 2.44 8.12 -2.39 -0.02 2.42 16 42 H 0.26 13.41 8.32 -92.71 -0.77 12.64 16 43 H 0.07 2.97 8.08 -2.39 -0.02 2.95 16 44 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 46 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 47 H 0.08 1.72 5.73 -2.39 -0.01 1.71 16 48 H 0.12 1.76 8.06 -2.39 -0.02 1.74 16 Total: -1.00 -60.86 398.54 2.21 -58.65 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.18 Total: 32.06 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 5.45 Total: 8.68 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -4.11 Total: -91.31 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.11 Total: -43.81 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -1.23 Total: -6.03 kcal Total: -60.86 2.21 -58.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324829062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.161 kcal (2) G-P(sol) polarization free energy of solvation -60.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds