Wall clock time and date at job start Tue Mar 31 2020 23:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99752 * 2 1 4 4 H 1.48498 * 109.47010 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47172 * 300.00121 * 3 2 1 6 6 H 1.48502 * 109.46945 * 60.00108 * 3 2 1 7 7 C 1.38805 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99827 * 164.26877 * 7 2 1 9 9 N 1.36934 * 120.00221 * 344.27045 * 7 2 1 10 10 C 1.47229 * 121.33189 * 155.42123 * 9 7 2 11 11 C 1.52796 * 107.90732 * 115.78564 * 10 9 7 12 12 C 1.50593 * 110.91034 * 47.35338 * 11 10 9 13 13 C 1.38980 * 117.63151 * 160.06061 * 12 11 10 14 14 C 1.50700 * 119.70961 * 359.28290 * 13 12 11 15 15 N 1.46505 * 109.47219 * 79.72633 * 14 13 12 16 16 C 1.34774 * 119.99746 * 180.02562 * 15 14 13 17 17 O 1.21283 * 120.00274 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99567 * 180.27755 * 16 15 14 19 19 N 1.46502 * 109.46813 * 179.72344 * 18 16 15 20 20 C 1.36882 * 126.39968 * 90.00156 * 19 18 16 21 21 C 1.34663 * 106.81823 * 179.97438 * 20 19 18 22 22 N 1.34123 * 108.02346 * 359.97438 * 21 20 19 23 23 C 1.30509 * 109.25459 * 359.72917 * 22 21 20 24 24 C 1.37903 * 120.58148 * 179.01128 * 13 12 11 25 25 C 1.38268 * 119.82854 * 0.32484 * 24 13 12 26 26 C 1.37957 * 119.71239 * 0.26599 * 25 24 13 27 27 C 1.37668 * 122.85389 * 340.07171 * 12 11 10 28 28 C 1.46682 * 121.32687 * 335.39187 * 9 7 2 29 29 H 0.96997 * 120.00172 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.76978 * 235.39405 * 10 9 7 31 31 H 1.09004 * 109.76833 * 356.18465 * 10 9 7 32 32 H 1.08996 * 109.19709 * 167.88525 * 11 10 9 33 33 H 1.08992 * 109.20382 * 287.22953 * 11 10 9 34 34 H 1.09004 * 109.46870 * 319.72892 * 14 13 12 35 35 H 1.09002 * 109.47513 * 199.73200 * 14 13 12 36 36 H 0.96993 * 119.99786 * 359.97438 * 15 14 13 37 37 H 1.09003 * 109.47165 * 299.72094 * 18 16 15 38 38 H 1.08994 * 109.47333 * 59.72311 * 18 16 15 39 39 H 1.07998 * 126.58668 * 359.96386 * 20 19 18 40 40 H 1.08002 * 125.98893 * 180.02562 * 21 20 19 41 41 H 1.07998 * 125.64803 * 180.28837 * 23 22 21 42 42 H 1.08001 * 120.08341 * 180.35694 * 24 13 12 43 43 H 1.07993 * 120.14051 * 180.28637 * 25 24 13 44 44 H 1.08001 * 119.74326 * 179.83242 * 26 25 24 45 45 H 1.08996 * 109.43156 * 104.34063 * 28 9 7 46 46 H 1.08998 * 109.43674 * 344.47846 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0599 -1.2194 -0.2541 9 7 1.3641 -2.3659 0.3204 10 6 1.8520 -3.6697 -0.1589 11 6 2.2729 -4.4906 1.0591 12 6 1.2162 -4.4426 2.1309 13 6 1.2323 -5.4415 3.0971 14 6 2.2757 -6.5268 3.0320 15 7 3.5401 -6.0219 3.5732 16 6 4.6227 -6.8234 3.6157 17 8 4.5503 -7.9628 3.2063 18 6 5.9216 -6.3060 4.1782 19 7 6.9347 -7.3627 4.1192 20 6 7.7948 -7.6063 3.0826 21 6 8.5502 -8.6613 3.4429 22 7 8.1625 -9.0508 4.6664 23 6 7.1992 -8.2736 5.0803 24 6 0.3053 -5.4450 4.1181 25 6 -0.6538 -4.4509 4.1797 26 6 -0.6797 -3.4651 3.2150 27 6 0.2519 -3.4615 2.1856 28 6 0.1586 -2.3635 1.1561 29 1 -0.4850 0.8400 -0.0004 30 1 1.0561 -4.1867 -0.6950 31 1 2.7073 -3.5234 -0.8186 32 1 2.4326 -5.5254 0.7562 33 1 3.2027 -4.0868 1.4596 34 1 2.4198 -6.8305 1.9951 35 1 1.9457 -7.3839 3.6190 36 1 3.5981 -5.1106 3.9002 37 1 6.2556 -5.4494 3.5926 38 1 5.7734 -6.0022 5.2144 39 1 7.8556 -7.0580 2.1542 40 1 9.3320 -9.1138 2.8509 41 1 6.6951 -8.3486 6.0325 42 1 0.3288 -6.2218 4.8680 43 1 -1.3793 -4.4462 4.9796 44 1 -1.4304 -2.6899 3.2611 45 1 -0.7176 -2.5276 0.5290 46 1 0.0683 -1.4010 1.6596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326676308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:38 Heat of formation + Delta-G solvation = 82.151373 kcal Electronic energy + Delta-G solvation = -28823.169696 eV Core-core repulsion = 24907.538364 eV Total energy + Delta-G solvation = -3915.631331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.23309 -40.18059 -39.29069 -36.12424 -35.17579 -34.19221 -32.86928 -31.87187 -30.24066 -29.69382 -29.17436 -28.11296 -25.68124 -25.59995 -23.27568 -22.23796 -21.71945 -21.50370 -20.77162 -20.56224 -19.12751 -17.97874 -17.63588 -16.89252 -16.10439 -15.98459 -15.69606 -15.14927 -14.97102 -14.89889 -14.41589 -14.34154 -14.04469 -13.78645 -13.68950 -13.39866 -13.37265 -13.13794 -12.96418 -12.69505 -12.62649 -12.33505 -12.07295 -11.63024 -11.37247 -11.06423 -10.97405 -10.83399 -10.61762 -10.44378 -10.26706 -10.16044 -9.99204 -9.84500 -9.71327 -9.29834 -8.79091 -8.65023 -8.39387 -7.99888 -6.88989 -5.93683 -3.33759 1.43901 1.75253 1.84554 2.22720 2.41295 3.04414 3.13386 3.27968 3.36156 3.37704 4.06425 4.27597 4.36135 4.36982 4.55052 4.59555 4.67573 4.76173 5.00887 5.14924 5.21164 5.29032 5.29739 5.38906 5.43252 5.53284 5.59232 5.71304 5.86707 5.98759 6.00947 6.03477 6.09787 6.12105 6.35854 6.43077 6.54072 6.56762 6.72277 6.73200 6.82749 6.91805 6.99047 7.10417 7.20154 7.33102 7.49934 7.65559 7.85209 7.91815 8.24268 9.05151 9.67438 10.25197 11.16826 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.002798 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.129287 B =10005.655759 C =11582.120166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.001 3.999 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.593 5.593 10 C 0.141 3.859 11 C -0.099 4.099 12 C -0.046 4.046 13 C -0.127 4.127 14 C 0.167 3.833 15 N -0.714 5.714 16 C 0.494 3.506 17 O -0.525 6.525 18 C 0.085 3.915 19 N -0.445 5.445 20 C -0.044 4.044 21 C -0.031 4.031 22 N -0.495 5.495 23 C 0.191 3.809 24 C -0.117 4.117 25 C -0.131 4.131 26 C -0.111 4.111 27 C -0.076 4.076 28 C 0.204 3.796 29 H 0.255 0.745 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.405 0.595 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.202 0.798 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.041 0.959 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -10.323 10.253 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.315 5.315 10 C 0.015 3.985 11 C -0.137 4.137 12 C -0.047 4.047 13 C -0.127 4.127 14 C 0.045 3.955 15 N -0.367 5.367 16 C 0.278 3.722 17 O -0.400 6.400 18 C -0.042 4.042 19 N -0.128 5.128 20 C -0.176 4.176 21 C -0.178 4.178 22 N -0.213 5.213 23 C -0.092 4.092 24 C -0.136 4.136 25 C -0.149 4.149 26 C -0.130 4.130 27 C -0.078 4.078 28 C 0.079 3.921 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.240 0.760 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.190 0.810 40 H 0.186 0.814 41 H 0.218 0.782 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.059 0.941 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.669 -11.552 10.350 16.883 hybrid contribution -0.243 2.097 -0.267 2.128 sum 6.426 -9.454 10.083 15.243 Atomic orbital electron populations 1.70004 1.05221 1.25632 1.54342 1.25019 0.95397 0.98421 1.00864 0.86186 0.79253 0.83746 0.77373 1.20256 1.21613 1.21509 1.19197 0.92352 0.84201 1.42127 0.91223 1.44003 1.30223 1.01355 1.55911 1.20912 0.97584 0.87277 0.92773 1.21035 0.96549 0.99808 0.96344 1.19439 0.96419 0.93296 0.95525 1.19757 0.98278 0.97415 0.97292 1.20186 0.80905 0.94527 0.99885 1.46049 1.10294 1.16511 1.63810 1.20702 0.85330 0.86401 0.79812 1.90799 1.84229 1.18176 1.46809 1.21706 0.86583 0.90500 1.05417 1.44989 1.26816 1.25722 1.15267 1.22717 0.96440 1.03615 0.94869 1.22247 1.03430 0.97638 0.94516 1.70278 1.12949 1.25689 1.12427 1.24932 0.98656 0.89321 0.96269 1.20758 0.96020 0.99026 0.97773 1.20950 0.99129 0.95494 0.99358 1.21218 0.98838 0.98542 0.94426 1.21049 0.93025 0.97006 0.96715 1.19780 0.89167 0.94297 0.88890 0.93482 0.95531 0.92091 0.91987 0.91327 0.90305 0.91057 0.75994 0.85755 0.85760 0.80969 0.81384 0.78179 0.86834 0.86586 0.86177 0.94089 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.92 11.10 55.49 0.62 -24.31 16 2 C 0.00 0.03 4.99 -17.43 -0.09 -0.05 16 3 Si 0.90 20.63 29.58 -169.99 -5.03 15.60 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.43 9.69 -15.06 -0.15 -6.58 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -13.91 2.97 -173.94 -0.52 -14.43 16 10 C 0.14 2.75 6.52 -3.75 -0.02 2.72 16 11 C -0.10 -1.57 5.24 -28.04 -0.15 -1.72 16 12 C -0.05 -0.75 5.76 -104.61 -0.60 -1.35 16 13 C -0.13 -1.69 5.26 -104.47 -0.55 -2.24 16 14 C 0.17 1.95 5.10 -5.19 -0.03 1.93 16 15 N -0.71 -6.91 5.52 -61.46 -0.34 -7.25 16 16 C 0.49 5.11 7.90 -10.98 -0.09 5.03 16 17 O -0.52 -7.87 16.43 5.56 0.09 -7.78 16 18 C 0.08 0.58 6.63 -5.19 -0.03 0.55 16 19 N -0.44 -4.36 2.24 -119.86 -0.27 -4.63 16 20 C -0.04 -0.45 11.58 -16.56 -0.19 -0.65 16 21 C -0.03 -0.36 11.87 -17.82 -0.21 -0.57 16 22 N -0.50 -6.50 11.25 -14.67 -0.17 -6.67 16 23 C 0.19 2.05 12.56 -90.37 -1.14 0.91 16 24 C -0.12 -1.47 9.65 -39.69 -0.38 -1.85 16 25 C -0.13 -1.74 10.05 -39.67 -0.40 -2.14 16 26 C -0.11 -1.77 9.62 -39.46 -0.38 -2.15 16 27 C -0.08 -1.40 5.82 -104.56 -0.61 -2.01 16 28 C 0.20 4.58 4.85 -5.04 -0.02 4.55 16 29 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 32 H 0.06 0.89 6.25 -51.93 -0.32 0.56 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.01 6.34 -51.93 -0.33 0.68 16 35 H 0.07 0.82 7.99 -51.93 -0.41 0.41 16 36 H 0.41 3.32 8.46 -40.82 -0.35 2.98 16 37 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.11 1.17 8.02 -52.49 -0.42 0.75 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.81 8.05 -52.49 -0.42 1.38 16 45 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.10 2.42 6.34 -51.93 -0.33 2.09 16 LS Contribution 382.07 15.07 5.76 5.76 Total: -1.00 -33.51 382.07 -11.25 -44.76 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.35 Total: 4.56 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -5.04 Total: -5.62 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.67 Total: -57.28 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.51 -11.25 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326676308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.908 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds