Wall clock time and date at job start Tue Mar 31 2020 23:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81401 * 102.99879 * 2 1 4 4 C 1.53002 * 109.46785 * 180.02562 * 3 2 1 5 5 C 1.52991 * 115.55015 * 304.67767 * 4 3 2 6 6 C 1.53000 * 109.47594 * 298.13572 * 5 4 3 7 7 N 1.46497 * 109.47349 * 185.18066 * 6 5 4 8 8 C 1.34778 * 119.99646 * 179.97438 * 7 6 5 9 9 O 1.21349 * 120.00271 * 0.02562 * 8 7 6 10 10 C 1.49457 * 119.99756 * 179.97438 * 8 7 6 11 11 O 1.21350 * 119.99984 * 5.12217 * 10 8 7 12 12 N 1.34780 * 120.00152 * 185.12221 * 10 8 7 13 13 C 1.46495 * 120.00236 * 185.34008 * 12 10 8 14 14 C 1.52993 * 109.47342 * 184.60804 * 13 12 10 15 15 C 1.50702 * 115.55197 * 292.83746 * 14 13 12 16 16 H 1.08004 * 120.00058 * 95.79380 * 15 14 13 17 17 C 1.37879 * 119.99989 * 275.51421 * 15 14 13 18 18 N 1.31518 * 119.99856 * 355.59213 * 17 15 14 19 19 Si 1.86795 * 119.99963 * 175.58693 * 17 15 14 20 20 H 1.48502 * 109.47290 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47264 * 120.00479 * 19 17 15 22 22 H 1.48500 * 109.47062 * 240.00370 * 19 17 15 23 23 C 1.53000 * 117.49680 * 78.50582 * 14 13 12 24 24 C 1.53002 * 117.49984 * 147.16559 * 14 13 12 25 25 C 1.53002 * 117.49877 * 90.35131 * 4 3 2 26 26 C 1.53005 * 117.49680 * 159.01308 * 4 3 2 27 27 H 1.09005 * 109.47155 * 60.00226 * 1 2 3 28 28 H 1.09003 * 109.47448 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47434 * 300.00108 * 1 2 3 30 30 H 1.09001 * 109.47371 * 59.99964 * 3 2 1 31 31 H 1.09002 * 109.47352 * 299.99845 * 3 2 1 32 32 H 1.09002 * 109.47540 * 178.13740 * 5 4 3 33 33 H 1.09002 * 109.47250 * 58.13606 * 5 4 3 34 34 H 1.08998 * 109.47112 * 65.17876 * 6 5 4 35 35 H 1.08998 * 109.47223 * 305.18253 * 6 5 4 36 36 H 0.96992 * 120.00359 * 0.02562 * 7 6 5 37 37 H 0.97002 * 119.99576 * 5.33844 * 12 10 8 38 38 H 1.09001 * 109.47184 * 64.60617 * 13 12 10 39 39 H 1.08998 * 109.47072 * 304.61327 * 13 12 10 40 40 H 0.96992 * 119.99419 * 185.00353 * 18 17 15 41 41 H 1.09005 * 117.49969 * 215.00539 * 23 14 13 42 42 H 1.08996 * 117.50231 * 0.02562 * 23 14 13 43 43 H 1.08996 * 117.49678 * 359.97438 * 24 14 13 44 44 H 1.08996 * 117.49844 * 144.98093 * 24 14 13 45 45 H 1.08997 * 117.49559 * 214.99726 * 25 4 3 46 46 H 1.09001 * 117.49882 * 0.02581 * 25 4 3 47 47 H 1.08998 * 117.50045 * 359.97382 * 26 4 3 48 48 H 1.08995 * 117.49939 * 144.99609 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.4869 1.2338 1.1341 6 6 4.0268 1.8027 2.4778 7 7 4.8264 1.2161 3.5560 8 6 4.5969 1.5722 4.8355 9 8 3.7277 2.3784 5.0943 10 6 5.4123 0.9734 5.9356 11 8 6.3411 0.2384 5.6714 12 7 5.1161 1.2496 7.2211 13 6 5.9838 0.7588 8.2945 14 6 5.3665 1.1091 9.6498 15 6 5.3149 2.5786 9.9802 16 1 4.4165 3.1450 9.7837 17 6 6.4125 3.1986 10.5387 18 7 7.4728 2.4915 10.8632 19 14 6.3934 5.0429 10.8343 20 1 5.0929 5.6027 10.3863 21 1 6.5758 5.3140 12.2830 22 1 7.4962 5.6783 10.0692 23 6 4.2176 0.2316 10.1507 24 6 5.5979 0.1330 10.8051 25 6 4.4427 2.0279 -1.3581 26 6 4.3012 3.2787 -0.4868 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8031 2.2372 0.8900 31 1 1.8031 2.2372 -0.8900 32 1 5.5591 1.3937 1.0199 33 1 4.2732 0.1655 1.0995 34 1 2.9751 1.5621 2.6332 35 1 4.1557 2.8850 2.4774 36 1 5.5215 0.5720 3.3491 37 1 4.3284 1.7734 7.4355 38 1 6.9652 1.2258 8.2106 39 1 6.0881 -0.3230 8.2114 40 1 8.2156 2.9140 11.3219 41 1 3.4244 0.7172 10.7193 42 1 3.9019 -0.5955 9.5150 43 1 6.1897 -0.7589 10.5994 44 1 5.7132 0.5537 11.8039 45 1 5.4340 1.5828 -1.4426 46 1 3.8204 1.9634 -2.2506 47 1 3.5859 4.0364 -0.8066 48 1 5.1994 3.6562 0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328110849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:36 Heat of formation + Delta-G solvation = -33.732131 kcal Electronic energy + Delta-G solvation = -26721.457951 eV Core-core repulsion = 22903.952734 eV Total energy + Delta-G solvation = -3817.505217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.25484 -39.00237 -38.07876 -36.70548 -35.16556 -33.32313 -31.96658 -30.71495 -29.63155 -28.57063 -27.06760 -25.51157 -24.45405 -22.93527 -22.18370 -21.15187 -20.20748 -19.61287 -19.22692 -17.97579 -16.68237 -16.52957 -16.16786 -15.98106 -15.67089 -15.38176 -15.00744 -14.72259 -14.63492 -14.39543 -14.29879 -14.01326 -13.79352 -13.51820 -13.30077 -13.10162 -12.77892 -12.66573 -12.41912 -11.96336 -11.87247 -11.76502 -11.62389 -11.61037 -11.26678 -10.99390 -10.95015 -10.71935 -10.57921 -10.50946 -10.24792 -9.91823 -9.61238 -9.21077 -9.18692 -9.06826 -8.52523 -8.37482 -8.18209 -8.00636 -6.08491 -4.17839 1.25797 1.81597 2.21724 2.69482 3.26073 3.35256 3.35722 3.39253 3.62726 3.99916 4.15361 4.24810 4.36324 4.45920 4.50663 4.74759 4.77810 4.80819 4.93748 4.96529 5.11071 5.17969 5.19464 5.26482 5.29629 5.32910 5.35165 5.51387 5.61079 5.72512 5.80363 5.84601 5.96950 6.27653 6.29808 6.40927 6.49090 6.67695 6.75880 7.01189 7.09021 7.25507 7.34436 7.50218 7.81920 7.88306 8.17191 8.32385 8.53959 8.84705 9.49782 10.98748 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.002142 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.594616 B =13071.152792 C =13709.433136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.250 6.250 3 C -0.051 4.051 4 C -0.110 4.110 5 C -0.095 4.095 6 C 0.123 3.877 7 N -0.706 5.706 8 C 0.508 3.492 9 O -0.520 6.520 10 C 0.495 3.505 11 O -0.541 6.541 12 N -0.667 5.667 13 C 0.159 3.841 14 C 0.021 3.979 15 C -0.499 4.499 16 H 0.062 0.938 17 C 0.072 3.928 18 N -0.876 5.876 19 Si 0.890 3.110 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.210 4.210 24 C -0.140 4.140 25 C -0.162 4.162 26 C -0.164 4.164 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.412 0.588 37 H 0.413 0.587 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.261 0.739 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.457 -2.653 -24.052 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.023 6.023 3 C -0.199 4.199 4 C -0.112 4.112 5 C -0.133 4.133 6 C -0.001 4.001 7 N -0.361 5.361 8 C 0.289 3.711 9 O -0.395 6.395 10 C 0.275 3.725 11 O -0.420 6.420 12 N -0.317 5.317 13 C 0.037 3.963 14 C 0.020 3.980 15 C -0.537 4.537 16 H 0.080 0.920 17 C -0.132 4.132 18 N -0.512 5.512 19 Si 0.718 3.282 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.247 4.247 24 C -0.178 4.178 25 C -0.199 4.199 26 C -0.203 4.203 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.248 0.752 37 H 0.249 0.751 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.564 -3.427 -23.983 25.695 hybrid contribution -0.823 2.013 0.248 2.189 sum -9.387 -1.413 -23.735 25.563 Atomic orbital electron populations 1.23421 0.94695 1.06595 1.04868 1.86980 1.06704 1.10661 1.97980 1.22952 0.96844 0.94962 1.05122 1.20888 0.91904 1.01672 0.96692 1.21331 0.99667 1.00819 0.91454 1.21350 0.95709 0.98245 0.84757 1.45715 1.38854 1.46030 1.05458 1.20474 0.83990 0.82454 0.84163 1.90751 1.32185 1.32971 1.83570 1.19944 0.85283 0.82804 0.84504 1.90710 1.30794 1.36800 1.83679 1.45895 1.29127 1.52192 1.04457 1.21216 0.93523 0.96341 0.85243 1.19039 0.96221 0.92984 0.89738 1.20435 0.99117 0.91354 1.42768 0.91950 1.24995 0.95179 0.98012 0.94968 1.69998 1.06492 1.35779 1.38934 0.86559 0.78251 0.85620 0.77760 1.19572 1.21023 1.20932 1.23025 0.92846 1.03013 1.05808 1.22482 0.96228 0.99897 0.99215 1.23098 1.02078 1.01335 0.93393 1.23158 1.03154 0.90679 1.03266 0.90682 0.88042 0.90379 0.89352 0.89965 0.90540 0.89638 0.90940 0.91150 0.75243 0.75067 0.90758 0.93393 0.92912 0.90216 0.91619 0.91714 0.89427 0.88270 0.88444 0.88497 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 10.76 101.05 1.09 0.33 16 2 S -0.25 -2.05 21.19 -107.50 -2.28 -4.33 16 3 C -0.05 -0.35 5.47 37.16 0.20 -0.15 16 4 C -0.11 -0.76 1.66 -154.51 -0.26 -1.02 16 5 C -0.09 -0.76 4.93 -26.74 -0.13 -0.89 16 6 C 0.12 1.28 5.35 -4.04 -0.02 1.25 16 7 N -0.71 -9.01 5.55 -60.73 -0.34 -9.35 16 8 C 0.51 8.44 7.89 -11.58 -0.09 8.35 16 9 O -0.52 -9.68 16.50 5.50 0.09 -9.59 16 10 C 0.50 9.39 7.88 -11.58 -0.09 9.30 16 11 O -0.54 -11.04 16.47 5.50 0.09 -10.95 16 12 N -0.67 -13.48 5.48 -60.73 -0.33 -13.81 16 13 C 0.16 3.57 5.53 -4.05 -0.02 3.54 16 14 C 0.02 0.49 1.44 -155.66 -0.22 0.27 16 15 C -0.50 -13.01 8.68 -34.44 -0.30 -13.31 16 16 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 17 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 18 N -0.88 -24.16 12.68 55.43 0.70 -23.46 16 19 Si 0.89 20.85 29.54 -169.99 -5.02 15.82 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 24 C -0.14 -3.18 9.17 -26.69 -0.24 -3.43 16 25 C -0.16 -0.98 9.93 -26.69 -0.26 -1.24 16 26 C -0.16 -1.00 9.97 -26.69 -0.27 -1.26 16 27 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.63 7.45 -51.92 -0.39 0.25 16 31 H 0.08 0.48 8.10 -51.92 -0.42 0.06 16 32 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 33 H 0.09 0.73 7.22 -51.93 -0.38 0.36 16 34 H 0.07 0.80 7.39 -51.93 -0.38 0.42 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.41 4.76 7.95 -40.82 -0.32 4.43 16 37 H 0.41 8.25 7.90 -40.82 -0.32 7.93 16 38 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 40 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 41 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 416.91 15.07 6.28 6.28 Total: -1.00 -29.80 416.91 -9.88 -39.68 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.09 Total: 10.77 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.99 Total: -1.07 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.03 Total: -46.62 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.18 Total: -20.54 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.28 Total: -4.33 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.80 -9.88 -39.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328110849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.947 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds