Wall clock time and date at job start Tue Mar 31 2020 23:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81401 * 102.99879 * 2 1 4 4 C 1.53002 * 109.46785 * 180.02562 * 3 2 1 5 5 C 1.52991 * 115.55015 * 304.67767 * 4 3 2 6 6 C 1.53000 * 109.47594 * 298.13572 * 5 4 3 7 7 N 1.46497 * 109.47349 * 185.18066 * 6 5 4 8 8 C 1.34778 * 119.99646 * 179.97438 * 7 6 5 9 9 O 1.21349 * 120.00271 * 0.02562 * 8 7 6 10 10 C 1.49457 * 119.99756 * 179.97438 * 8 7 6 11 11 O 1.21350 * 119.99984 * 5.12217 * 10 8 7 12 12 N 1.34780 * 120.00152 * 185.12221 * 10 8 7 13 13 C 1.46495 * 120.00236 * 185.34008 * 12 10 8 14 14 C 1.52993 * 109.47342 * 184.60804 * 13 12 10 15 15 C 1.50702 * 115.55197 * 292.83746 * 14 13 12 16 16 H 1.08004 * 120.00058 * 95.79380 * 15 14 13 17 17 C 1.37879 * 119.99989 * 275.51421 * 15 14 13 18 18 N 1.31518 * 119.99856 * 355.59213 * 17 15 14 19 19 Si 1.86795 * 119.99963 * 175.58693 * 17 15 14 20 20 H 1.48502 * 109.47290 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47264 * 120.00479 * 19 17 15 22 22 H 1.48500 * 109.47062 * 240.00370 * 19 17 15 23 23 C 1.53000 * 117.49680 * 78.50582 * 14 13 12 24 24 C 1.53002 * 117.49984 * 147.16559 * 14 13 12 25 25 C 1.53002 * 117.49877 * 90.35131 * 4 3 2 26 26 C 1.53005 * 117.49680 * 159.01308 * 4 3 2 27 27 H 1.09005 * 109.47155 * 60.00226 * 1 2 3 28 28 H 1.09003 * 109.47448 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47434 * 300.00108 * 1 2 3 30 30 H 1.09001 * 109.47371 * 59.99964 * 3 2 1 31 31 H 1.09002 * 109.47352 * 299.99845 * 3 2 1 32 32 H 1.09002 * 109.47540 * 178.13740 * 5 4 3 33 33 H 1.09002 * 109.47250 * 58.13606 * 5 4 3 34 34 H 1.08998 * 109.47112 * 65.17876 * 6 5 4 35 35 H 1.08998 * 109.47223 * 305.18253 * 6 5 4 36 36 H 0.96992 * 120.00359 * 0.02562 * 7 6 5 37 37 H 0.97002 * 119.99576 * 5.33844 * 12 10 8 38 38 H 1.09001 * 109.47184 * 64.60617 * 13 12 10 39 39 H 1.08998 * 109.47072 * 304.61327 * 13 12 10 40 40 H 0.96992 * 119.99419 * 185.00353 * 18 17 15 41 41 H 1.09005 * 117.49969 * 215.00539 * 23 14 13 42 42 H 1.08996 * 117.50231 * 0.02562 * 23 14 13 43 43 H 1.08996 * 117.49678 * 359.97438 * 24 14 13 44 44 H 1.08996 * 117.49844 * 144.98093 * 24 14 13 45 45 H 1.08997 * 117.49559 * 214.99726 * 25 4 3 46 46 H 1.09001 * 117.49882 * 0.02581 * 25 4 3 47 47 H 1.08998 * 117.50045 * 359.97382 * 26 4 3 48 48 H 1.08995 * 117.49939 * 144.99609 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.4869 1.2338 1.1341 6 6 4.0268 1.8027 2.4778 7 7 4.8264 1.2161 3.5560 8 6 4.5969 1.5722 4.8355 9 8 3.7277 2.3784 5.0943 10 6 5.4123 0.9734 5.9356 11 8 6.3411 0.2384 5.6714 12 7 5.1161 1.2496 7.2211 13 6 5.9838 0.7588 8.2945 14 6 5.3665 1.1091 9.6498 15 6 5.3149 2.5786 9.9802 16 1 4.4165 3.1450 9.7837 17 6 6.4125 3.1986 10.5387 18 7 7.4728 2.4915 10.8632 19 14 6.3934 5.0429 10.8343 20 1 5.0929 5.6027 10.3863 21 1 6.5758 5.3140 12.2830 22 1 7.4962 5.6783 10.0692 23 6 4.2176 0.2316 10.1507 24 6 5.5979 0.1330 10.8051 25 6 4.4427 2.0279 -1.3581 26 6 4.3012 3.2787 -0.4868 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8031 2.2372 0.8900 31 1 1.8031 2.2372 -0.8900 32 1 5.5591 1.3937 1.0199 33 1 4.2732 0.1655 1.0995 34 1 2.9751 1.5621 2.6332 35 1 4.1557 2.8850 2.4774 36 1 5.5215 0.5720 3.3491 37 1 4.3284 1.7734 7.4355 38 1 6.9652 1.2258 8.2106 39 1 6.0881 -0.3230 8.2114 40 1 8.2156 2.9140 11.3219 41 1 3.4244 0.7172 10.7193 42 1 3.9019 -0.5955 9.5150 43 1 6.1897 -0.7589 10.5994 44 1 5.7132 0.5537 11.8039 45 1 5.4340 1.5828 -1.4426 46 1 3.8204 1.9634 -2.2506 47 1 3.5859 4.0364 -0.8066 48 1 5.1994 3.6562 0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328110849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:35 Heat of formation + Delta-G solvation = -51.339649 kcal Electronic energy + Delta-G solvation = -26722.221470 eV Core-core repulsion = 22903.952734 eV Total energy + Delta-G solvation = -3818.268736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.64968 -39.90379 -39.27674 -38.46157 -36.30636 -34.93107 -33.96494 -31.55739 -30.14055 -29.17153 -28.67400 -27.42653 -25.64102 -23.72877 -23.08874 -22.86164 -21.47263 -21.30814 -20.17731 -19.36171 -18.09230 -17.85842 -17.23994 -17.07448 -16.73463 -16.63290 -16.31623 -16.15130 -15.89273 -15.66504 -15.19867 -14.99235 -14.82347 -14.53982 -14.41540 -14.37349 -13.85351 -13.68155 -13.48204 -13.32045 -13.14274 -12.95019 -12.86675 -12.79476 -12.50848 -12.35780 -12.32142 -12.25722 -12.01915 -11.42803 -11.24506 -11.13748 -10.96979 -10.73480 -10.46502 -10.45367 -10.30975 -10.10989 -9.97257 -8.62251 -8.11180 -6.24664 0.38032 0.73083 1.37836 1.39491 1.44044 1.53399 1.69985 2.17372 2.41518 2.69213 2.86618 3.16470 3.42157 3.58855 3.61752 3.70024 3.88782 3.94060 4.16669 4.19720 4.28274 4.32981 4.34925 4.50716 4.51584 4.53948 4.62326 4.65393 4.68926 4.82997 4.89025 4.90505 4.92168 5.01945 5.06692 5.09880 5.18752 5.20238 5.28313 5.28416 5.35218 5.52929 5.67852 5.77275 6.00131 6.35628 6.46058 6.77670 6.83124 7.00198 7.45019 8.95762 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.002142 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.594616 B =13071.152792 C =13709.433136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.298 6.298 3 C -0.040 4.040 4 C -0.121 4.121 5 C -0.086 4.086 6 C 0.124 3.876 7 N -0.687 5.687 8 C 0.514 3.486 9 O -0.542 6.542 10 C 0.496 3.504 11 O -0.556 6.556 12 N -0.670 5.670 13 C 0.175 3.825 14 C -0.003 4.003 15 C -0.507 4.507 16 H 0.057 0.943 17 C 0.027 3.973 18 N -0.904 5.904 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.286 1.286 23 C -0.181 4.181 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.159 4.159 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.419 0.581 37 H 0.415 0.585 38 H 0.040 0.960 39 H 0.055 0.945 40 H 0.260 0.740 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 -2.336 -25.764 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.071 6.071 3 C -0.188 4.188 4 C -0.122 4.122 5 C -0.124 4.124 6 C 0.002 3.998 7 N -0.340 5.340 8 C 0.294 3.706 9 O -0.419 6.419 10 C 0.276 3.724 11 O -0.436 6.436 12 N -0.320 5.320 13 C 0.051 3.949 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.174 4.174 18 N -0.541 5.541 19 Si 0.772 3.228 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.212 1.212 23 C -0.218 4.218 24 C -0.184 4.184 25 C -0.193 4.193 26 C -0.198 4.198 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.256 0.744 37 H 0.251 0.749 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.626 -3.122 -25.733 27.652 hybrid contribution -0.516 1.875 0.710 2.071 sum -10.143 -1.247 -25.023 27.029 Atomic orbital electron populations 1.23442 0.92458 1.07195 1.05562 1.87111 1.09347 1.12597 1.98089 1.22920 0.96850 0.93537 1.05488 1.20867 0.91905 1.02533 0.96912 1.21246 1.00281 1.00474 0.90364 1.21500 0.95143 0.98204 0.84950 1.45723 1.38516 1.45143 1.04638 1.19987 0.83579 0.82393 0.84664 1.90747 1.33135 1.34151 1.83911 1.20367 0.85127 0.82209 0.84656 1.90697 1.31497 1.37420 1.83941 1.45803 1.28950 1.52557 1.04651 1.20831 0.92199 0.96291 0.85537 1.19076 0.98599 0.92301 0.90402 1.20691 0.98772 0.92841 1.42132 0.92437 1.25645 0.95088 1.01468 0.95190 1.70093 1.07004 1.37105 1.39913 0.85688 0.78064 0.81425 0.77589 1.19120 1.20644 1.21225 1.23014 0.91768 1.02418 1.04571 1.22406 0.98105 1.00004 0.97904 1.23145 1.02131 1.00985 0.93010 1.23215 1.03176 0.90582 1.02855 0.89382 0.87531 0.90262 0.89796 0.88707 0.89670 0.90158 0.91354 0.91152 0.74371 0.74897 0.94120 0.92703 0.93058 0.89879 0.89210 0.90630 0.91581 0.88000 0.87799 0.87593 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.76 113.37 1.22 -0.03 16 2 S -0.30 -4.59 21.19 -56.49 -1.20 -5.79 16 3 C -0.04 -0.49 5.47 71.98 0.39 -0.10 16 4 C -0.12 -1.46 1.66 -52.18 -0.09 -1.54 16 5 C -0.09 -1.24 4.93 30.59 0.15 -1.09 16 6 C 0.12 2.42 5.35 86.38 0.46 2.88 16 7 N -0.69 -16.68 5.55 -464.41 -2.58 -19.26 16 8 C 0.51 16.62 7.89 87.27 0.69 17.31 16 9 O -0.54 -19.79 16.50 -3.24 -0.05 -19.84 16 10 C 0.50 18.56 7.88 87.27 0.69 19.25 16 11 O -0.56 -22.41 16.47 -3.25 -0.05 -22.46 16 12 N -0.67 -26.90 5.48 -464.42 -2.54 -29.44 16 13 C 0.17 7.85 5.53 86.38 0.48 8.33 16 14 C 0.00 -0.14 1.44 -52.93 -0.08 -0.22 16 15 C -0.51 -26.46 8.68 25.60 0.22 -26.23 16 16 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 17 C 0.03 1.45 5.43 84.65 0.46 1.91 16 18 N -0.90 -50.56 12.68 21.45 0.27 -50.29 16 19 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 C -0.18 -7.28 9.96 30.62 0.30 -6.98 16 24 C -0.15 -6.59 9.17 30.62 0.28 -6.31 16 25 C -0.16 -1.55 9.93 30.62 0.30 -1.24 16 26 C -0.16 -1.60 9.97 30.62 0.31 -1.29 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.09 7.45 -2.39 -0.02 1.07 16 31 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.08 1.09 8.11 -2.39 -0.02 1.07 16 33 H 0.08 1.28 7.22 -2.39 -0.02 1.26 16 34 H 0.07 1.44 7.39 -2.39 -0.02 1.42 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.42 9.10 7.95 -92.71 -0.74 8.36 16 37 H 0.41 16.43 7.90 -92.71 -0.73 15.70 16 38 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 2.36 8.04 -2.39 -0.02 2.34 16 40 H 0.26 13.98 8.32 -92.71 -0.77 13.21 16 41 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 42 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 45 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -63.05 416.91 1.16 -61.88 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -0.51 Total: 35.55 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.79 Total: 4.64 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.85 Total: -98.99 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.11 Total: -42.30 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -4.59 SS G_CDS: -1.20 Total: -5.79 kcal Total: -63.05 1.16 -61.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328110849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.545 kcal (2) G-P(sol) polarization free energy of solvation -63.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds