Wall clock time and date at job start Tue Mar 31 2020 23:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00105 * 2 1 4 4 H 1.48507 * 109.47106 * 270.00049 * 3 2 1 5 5 H 1.48503 * 109.47226 * 29.99906 * 3 2 1 6 6 H 1.48502 * 109.47049 * 150.00088 * 3 2 1 7 7 C 1.38808 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00185 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99947 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47218 * 175.29941 * 10 9 7 12 12 H 1.09008 * 109.58379 * 309.13538 * 11 10 9 13 13 C 1.53191 * 109.58859 * 188.70988 * 11 10 9 14 14 C 1.53039 * 109.31404 * 185.57411 * 13 11 10 15 15 C 1.53034 * 109.54019 * 61.36535 * 14 13 11 16 16 C 1.53625 * 109.24374 * 298.51167 * 15 14 13 17 17 N 1.46920 * 109.59293 * 69.41637 * 11 10 9 18 18 C 1.34783 * 120.62923 * 353.37962 * 17 11 10 19 19 O 1.21553 * 119.99716 * 6.42442 * 18 17 11 20 20 C 1.47865 * 120.00018 * 186.43231 * 18 17 11 21 21 C 1.40617 * 119.75482 * 38.70450 * 20 18 17 22 22 C 1.35731 * 120.83378 * 179.71774 * 21 20 18 23 23 C 1.40701 * 120.08310 * 0.02562 * 22 21 20 24 24 N 1.33798 * 120.86114 * 180.02562 * 23 22 21 25 25 C 1.31329 * 119.76581 * 179.97438 * 24 23 22 26 26 C 1.39758 * 120.71111 * 359.97438 * 25 24 23 27 27 N 1.31284 * 120.67030 * 0.02562 * 26 25 24 28 28 C 1.33814 * 119.73916 * 359.97438 * 27 26 25 29 29 C 1.38411 * 119.74986 * 218.42747 * 20 18 17 30 30 H 0.97002 * 119.99773 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00107 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47678 * 55.29470 * 10 9 7 33 33 H 1.09008 * 109.47073 * 295.29305 * 10 9 7 34 34 H 1.08997 * 109.49845 * 305.52415 * 13 11 10 35 35 H 1.09002 * 109.49764 * 65.62367 * 13 11 10 36 36 H 1.09004 * 109.46234 * 181.38355 * 14 13 11 37 37 H 1.08997 * 109.46202 * 301.34232 * 14 13 11 38 38 H 1.08998 * 109.49825 * 58.58531 * 15 14 13 39 39 H 1.08998 * 109.49878 * 178.65089 * 15 14 13 40 40 H 1.08999 * 109.73656 * 295.12055 * 16 15 14 41 41 H 1.08989 * 109.67006 * 174.55005 * 16 15 14 42 42 H 1.07998 * 119.58065 * 359.69627 * 21 20 18 43 43 H 1.08007 * 119.95857 * 180.02562 * 22 21 20 44 44 H 1.07994 * 119.64590 * 180.02562 * 25 24 23 45 45 H 1.07994 * 119.66517 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.26027 * 0.26003 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0679 -4.8173 0.1177 12 1 0.3959 -4.6401 0.9575 13 6 1.8340 -6.1257 0.3362 14 6 0.8503 -7.2979 0.3145 15 6 0.1621 -7.3634 -1.0508 16 6 -0.6272 -6.0660 -1.2827 17 7 0.2877 -4.9275 -1.1224 18 6 0.4050 -3.9990 -2.0923 19 8 1.2442 -3.1247 -1.9984 20 6 -0.4875 -4.0437 -3.2704 21 6 -1.8393 -4.3954 -3.1089 22 6 -2.6792 -4.4379 -4.1743 23 6 -2.2021 -4.1286 -5.4613 24 7 -3.0164 -4.1650 -6.5223 25 6 -2.5483 -3.8718 -7.7138 26 6 -1.2067 -3.5208 -7.8871 27 7 -0.3879 -3.4779 -6.8618 28 6 -0.8410 -3.7724 -5.6376 29 6 0.0127 -3.7335 -4.5231 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.7463 -3.6790 0.8442 33 1 2.6199 -3.7519 -0.9298 34 1 2.5697 -6.2535 -0.4578 35 1 2.3408 -6.0939 1.3007 36 1 1.3896 -8.2280 0.4943 37 1 0.1003 -7.1570 1.0928 38 1 0.9136 -7.4795 -1.8318 39 1 -0.5206 -8.2128 -1.0737 40 1 -1.4346 -5.9911 -0.5544 41 1 -1.0406 -6.0634 -2.2912 42 1 -2.2139 -4.6351 -2.1247 43 1 -3.7151 -4.7095 -4.0340 44 1 -3.2074 -3.9014 -8.5688 45 1 -0.8396 -3.2833 -8.8746 46 1 1.0515 -3.4636 -4.6428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328672612.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:04 Heat of formation + Delta-G solvation = 95.536538 kcal Electronic energy + Delta-G solvation = -30121.620786 eV Core-core repulsion = 26206.569878 eV Total energy + Delta-G solvation = -3915.050907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46568 -40.24143 -37.54822 -36.72090 -34.84719 -34.41981 -32.77533 -32.04681 -30.70350 -30.53951 -29.81773 -26.45958 -25.52211 -24.71321 -24.13436 -22.88083 -22.40566 -21.49205 -20.75149 -19.65901 -18.62521 -17.78643 -17.11908 -16.78522 -16.03390 -15.56590 -15.19622 -14.91550 -14.86246 -14.53393 -14.34523 -14.31901 -14.27209 -13.71011 -13.49892 -13.41521 -13.01213 -12.79906 -12.35767 -12.20537 -12.13878 -11.92194 -11.83168 -11.75429 -11.74106 -11.52581 -11.04855 -10.91469 -10.75969 -10.71855 -10.54549 -10.33259 -9.90509 -9.55774 -9.21560 -8.97542 -8.80182 -8.63254 -8.35791 -8.11975 -6.57530 -5.61345 -2.77375 0.08404 0.40287 1.84694 2.49417 3.26271 3.47339 3.55330 3.58305 3.59118 3.92252 4.00513 4.06370 4.19737 4.62279 4.71209 4.73048 4.76339 4.83860 4.90788 4.98440 5.04301 5.14401 5.16556 5.32837 5.38716 5.46709 5.58607 5.66755 5.75901 5.77136 5.81381 5.86473 5.92829 5.96336 6.02418 6.07798 6.09815 6.13576 6.28928 6.33745 6.50322 6.54296 6.65296 6.91095 7.16106 7.25770 7.62604 7.83358 7.87374 8.56906 8.82767 9.68076 10.27027 10.61075 11.62105 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.004548 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.844147 B = 6155.725369 C = 8663.667351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.021 4.021 3 Si 0.903 3.097 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.283 1.283 7 C -0.206 4.206 8 H 0.067 0.933 9 N -0.693 5.693 10 C 0.156 3.844 11 C 0.144 3.856 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.101 3.899 17 N -0.610 5.610 18 C 0.511 3.489 19 O -0.430 6.430 20 C -0.086 4.086 21 C -0.072 4.072 22 C -0.094 4.094 23 C 0.085 3.915 24 N -0.428 5.428 25 C 0.071 3.929 26 C 0.069 3.931 27 N -0.419 5.419 28 C 0.078 3.922 29 C -0.035 4.035 30 H 0.251 0.749 31 H 0.380 0.620 32 H 0.017 0.983 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.173 0.827 45 H 0.173 0.827 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 -17.872 -9.770 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.216 4.216 3 Si 0.735 3.265 4 H -0.220 1.220 5 H -0.221 1.221 6 H -0.209 1.209 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.335 5.335 10 C 0.029 3.971 11 C 0.041 3.959 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.172 4.172 16 C -0.022 4.022 17 N -0.348 5.348 18 C 0.296 3.704 19 O -0.298 6.298 20 C -0.091 4.091 21 C -0.092 4.092 22 C -0.114 4.114 23 C -0.039 4.039 24 N -0.142 5.142 25 C -0.104 4.104 26 C -0.107 4.107 27 N -0.134 5.134 28 C -0.046 4.046 29 C -0.056 4.056 30 H 0.061 0.939 31 H 0.213 0.787 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.190 0.810 45 H 0.190 0.810 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.927 -17.226 -9.439 20.251 hybrid contribution -0.116 1.019 -0.238 1.053 sum -5.044 -16.207 -9.677 19.539 Atomic orbital electron populations 1.69655 1.05055 1.25163 1.58502 1.24637 0.95450 0.97371 1.04132 0.86220 0.78574 0.84263 0.77420 1.22025 1.22051 1.20931 1.19200 0.90865 0.84217 1.39524 0.91491 1.42322 1.05433 0.99885 1.85871 1.20981 0.93073 0.84713 0.98358 1.21511 0.93341 0.95579 0.85468 0.91185 1.21907 0.98138 0.94150 1.02404 1.21499 0.98693 0.98277 0.97053 1.21996 0.99908 0.97191 0.98135 1.22062 0.92289 0.85645 1.02235 1.47681 1.44313 1.24837 1.17993 1.18087 0.86271 0.82971 0.83062 1.91203 1.31853 1.32784 1.73973 1.20246 0.94521 0.99943 0.94432 1.21255 0.92315 0.95956 0.99701 1.20621 1.00559 1.00676 0.89524 1.19599 0.90785 0.99333 0.94191 1.68671 1.36096 1.10566 0.98859 1.24031 0.95319 0.95232 0.95849 1.24032 0.91544 0.96109 0.98971 1.68671 1.36770 1.09376 0.98540 1.19426 0.92625 0.99951 0.92603 1.21084 1.00385 0.95134 0.88948 0.93896 0.78691 0.96531 0.93783 0.91505 0.90841 0.92035 0.91837 0.91608 0.91210 0.91615 0.89444 0.83953 0.84047 0.81028 0.80980 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.45 13.06 55.49 0.72 -28.73 16 2 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 3 Si 0.90 23.72 29.55 -169.99 -5.02 18.69 16 4 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.21 -6.06 9.71 -15.06 -0.15 -6.21 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.69 -18.25 3.24 -59.91 -0.19 -18.44 16 10 C 0.16 3.30 4.87 -4.04 -0.02 3.28 16 11 C 0.14 2.33 2.92 -67.60 -0.20 2.14 16 12 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 13 C -0.13 -1.58 5.36 -26.61 -0.14 -1.72 16 14 C -0.12 -1.15 5.88 -26.69 -0.16 -1.31 16 15 C -0.13 -1.27 6.10 -26.39 -0.16 -1.43 16 16 C 0.10 1.12 4.84 -3.48 -0.02 1.11 16 17 N -0.61 -9.43 2.97 -166.06 -0.49 -9.92 16 18 C 0.51 9.59 6.71 -12.32 -0.08 9.51 16 19 O -0.43 -10.23 10.68 5.32 0.06 -10.17 16 20 C -0.09 -1.40 5.17 -105.00 -0.54 -1.94 16 21 C -0.07 -0.97 7.27 -39.58 -0.29 -1.25 16 22 C -0.09 -1.21 9.95 -39.55 -0.39 -1.60 16 23 C 0.09 1.23 6.59 -84.72 -0.56 0.67 16 24 N -0.43 -5.54 10.46 -10.74 -0.11 -5.66 16 25 C 0.07 0.70 11.21 -17.20 -0.19 0.50 16 26 C 0.07 0.72 11.22 -17.22 -0.19 0.52 16 27 N -0.42 -6.07 10.46 -10.81 -0.11 -6.19 16 28 C 0.08 1.21 6.58 -84.81 -0.56 0.65 16 29 C -0.03 -0.58 9.58 -38.69 -0.37 -0.95 16 30 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.38 10.60 7.08 -40.82 -0.29 10.31 16 32 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 33 H 0.04 1.01 6.29 -51.92 -0.33 0.69 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.09 0.91 4.68 -51.94 -0.24 0.67 16 42 H 0.14 1.64 6.37 -52.49 -0.33 1.31 16 43 H 0.14 1.47 8.06 -52.48 -0.42 1.04 16 44 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.15 2.55 8.03 -52.49 -0.42 2.13 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -36.54 367.14 -9.97 -46.50 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.23 Total: 7.14 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -4.12 Total: 1.23 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -0.19 Total: -68.93 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.06 Total: -10.17 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -5.02 Total: 18.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.54 -9.97 -46.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328672612.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.039 kcal (2) G-P(sol) polarization free energy of solvation -36.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds