Wall clock time and date at job start Tue Mar 31 2020 23:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00105 * 2 1 4 4 H 1.48507 * 109.47106 * 270.00049 * 3 2 1 5 5 H 1.48503 * 109.47226 * 29.99906 * 3 2 1 6 6 H 1.48502 * 109.47049 * 150.00088 * 3 2 1 7 7 C 1.38808 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00185 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99947 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47218 * 175.29941 * 10 9 7 12 12 H 1.09008 * 109.58379 * 309.13538 * 11 10 9 13 13 C 1.53191 * 109.58859 * 188.70988 * 11 10 9 14 14 C 1.53039 * 109.31404 * 185.57411 * 13 11 10 15 15 C 1.53034 * 109.54019 * 61.36535 * 14 13 11 16 16 C 1.53625 * 109.24374 * 298.51167 * 15 14 13 17 17 N 1.46920 * 109.59293 * 69.41637 * 11 10 9 18 18 C 1.34783 * 120.62923 * 353.37962 * 17 11 10 19 19 O 1.21553 * 119.99716 * 6.42442 * 18 17 11 20 20 C 1.47865 * 120.00018 * 186.43231 * 18 17 11 21 21 C 1.40617 * 119.75482 * 38.70450 * 20 18 17 22 22 C 1.35731 * 120.83378 * 179.71774 * 21 20 18 23 23 C 1.40701 * 120.08310 * 0.02562 * 22 21 20 24 24 N 1.33798 * 120.86114 * 180.02562 * 23 22 21 25 25 C 1.31329 * 119.76581 * 179.97438 * 24 23 22 26 26 C 1.39758 * 120.71111 * 359.97438 * 25 24 23 27 27 N 1.31284 * 120.67030 * 0.02562 * 26 25 24 28 28 C 1.33814 * 119.73916 * 359.97438 * 27 26 25 29 29 C 1.38411 * 119.74986 * 218.42747 * 20 18 17 30 30 H 0.97002 * 119.99773 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00107 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47678 * 55.29470 * 10 9 7 33 33 H 1.09008 * 109.47073 * 295.29305 * 10 9 7 34 34 H 1.08997 * 109.49845 * 305.52415 * 13 11 10 35 35 H 1.09002 * 109.49764 * 65.62367 * 13 11 10 36 36 H 1.09004 * 109.46234 * 181.38355 * 14 13 11 37 37 H 1.08997 * 109.46202 * 301.34232 * 14 13 11 38 38 H 1.08998 * 109.49825 * 58.58531 * 15 14 13 39 39 H 1.08998 * 109.49878 * 178.65089 * 15 14 13 40 40 H 1.08999 * 109.73656 * 295.12055 * 16 15 14 41 41 H 1.08989 * 109.67006 * 174.55005 * 16 15 14 42 42 H 1.07998 * 119.58065 * 359.69627 * 21 20 18 43 43 H 1.08007 * 119.95857 * 180.02562 * 22 21 20 44 44 H 1.07994 * 119.64590 * 180.02562 * 25 24 23 45 45 H 1.07994 * 119.66517 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.26027 * 0.26003 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0679 -4.8173 0.1177 12 1 0.3959 -4.6401 0.9575 13 6 1.8340 -6.1257 0.3362 14 6 0.8503 -7.2979 0.3145 15 6 0.1621 -7.3634 -1.0508 16 6 -0.6272 -6.0660 -1.2827 17 7 0.2877 -4.9275 -1.1224 18 6 0.4050 -3.9990 -2.0923 19 8 1.2442 -3.1247 -1.9984 20 6 -0.4875 -4.0437 -3.2704 21 6 -1.8393 -4.3954 -3.1089 22 6 -2.6792 -4.4379 -4.1743 23 6 -2.2021 -4.1286 -5.4613 24 7 -3.0164 -4.1650 -6.5223 25 6 -2.5483 -3.8718 -7.7138 26 6 -1.2067 -3.5208 -7.8871 27 7 -0.3879 -3.4779 -6.8618 28 6 -0.8410 -3.7724 -5.6376 29 6 0.0127 -3.7335 -4.5231 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.7463 -3.6790 0.8442 33 1 2.6199 -3.7519 -0.9298 34 1 2.5697 -6.2535 -0.4578 35 1 2.3408 -6.0939 1.3007 36 1 1.3896 -8.2280 0.4943 37 1 0.1003 -7.1570 1.0928 38 1 0.9136 -7.4795 -1.8318 39 1 -0.5206 -8.2128 -1.0737 40 1 -1.4346 -5.9911 -0.5544 41 1 -1.0406 -6.0634 -2.2912 42 1 -2.2139 -4.6351 -2.1247 43 1 -3.7151 -4.7095 -4.0340 44 1 -3.2074 -3.9014 -8.5688 45 1 -0.8396 -3.2833 -8.8746 46 1 1.0515 -3.4636 -4.6428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328672612.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:03 Heat of formation + Delta-G solvation = 69.521357 kcal Electronic energy + Delta-G solvation = -30122.748889 eV Core-core repulsion = 26206.569878 eV Total energy + Delta-G solvation = -3916.179010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.51750 -41.53502 -38.66823 -38.01019 -36.26779 -35.83240 -34.02069 -33.64486 -31.86551 -31.67924 -31.39161 -27.85587 -26.76761 -25.99642 -25.28483 -24.34020 -23.73950 -22.78485 -21.92252 -20.76390 -19.79728 -19.17929 -18.64484 -18.02720 -17.23405 -16.86064 -16.67151 -16.25412 -15.94130 -15.87851 -15.60398 -15.42821 -15.27535 -15.19544 -14.99517 -14.67886 -14.38713 -14.12970 -13.71964 -13.56031 -13.41080 -13.17394 -12.97163 -12.89915 -12.83096 -12.80943 -12.73923 -12.55952 -12.14423 -12.06547 -11.86471 -11.71433 -11.46593 -11.34951 -10.92320 -10.20739 -10.12978 -9.88106 -9.70826 -9.47614 -8.66268 -7.86967 -5.05618 -0.94614 -0.60750 0.76215 1.39930 1.42152 1.45447 1.51381 1.99894 2.19046 2.59231 2.90307 3.01767 3.10586 3.20297 3.45570 3.50105 3.76760 3.80307 3.83165 3.95855 3.98131 4.03496 4.13092 4.18497 4.34975 4.39669 4.42108 4.48489 4.60532 4.69281 4.71638 4.74291 4.87682 4.88988 4.98704 5.05606 5.08535 5.12315 5.15528 5.19351 5.25451 5.33698 5.49598 5.52497 5.53598 5.81639 6.20542 6.34706 6.54621 6.66954 7.38682 7.43291 8.20556 8.43379 9.37735 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.004548 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.844147 B = 6155.725369 C = 8663.667351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.083 4.083 3 Si 0.964 3.036 4 H -0.299 1.299 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.211 4.211 8 H 0.061 0.939 9 N -0.705 5.705 10 C 0.159 3.841 11 C 0.148 3.852 12 H 0.070 0.930 13 C -0.120 4.120 14 C -0.112 4.112 15 C -0.129 4.129 16 C 0.092 3.908 17 N -0.603 5.603 18 C 0.515 3.485 19 O -0.499 6.499 20 C -0.099 4.099 21 C -0.075 4.075 22 C -0.080 4.080 23 C 0.072 3.928 24 N -0.444 5.444 25 C 0.093 3.907 26 C 0.083 3.917 27 N -0.459 5.459 28 C 0.055 3.945 29 C -0.051 4.051 30 H 0.244 0.756 31 H 0.367 0.633 32 H 0.016 0.984 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.163 0.837 43 H 0.173 0.827 44 H 0.226 0.774 45 H 0.219 0.781 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.915 -20.503 -11.588 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.274 4.274 3 Si 0.795 3.205 4 H -0.227 1.227 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.344 4.344 8 H 0.079 0.921 9 N -0.345 5.345 10 C 0.033 3.967 11 C 0.045 3.955 12 H 0.087 0.913 13 C -0.159 4.159 14 C -0.150 4.150 15 C -0.167 4.167 16 C -0.030 4.030 17 N -0.339 5.339 18 C 0.301 3.699 19 O -0.372 6.372 20 C -0.105 4.105 21 C -0.095 4.095 22 C -0.099 4.099 23 C -0.051 4.051 24 N -0.158 5.158 25 C -0.084 4.084 26 C -0.093 4.093 27 N -0.174 5.174 28 C -0.067 4.067 29 C -0.072 4.072 30 H 0.053 0.947 31 H 0.199 0.801 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.180 0.820 43 H 0.190 0.810 44 H 0.243 0.757 45 H 0.236 0.764 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.210 -19.965 -11.221 24.010 hybrid contribution 0.506 1.644 -0.111 1.723 sum -6.705 -18.321 -11.332 22.562 Atomic orbital electron populations 1.69809 1.06310 1.25137 1.61299 1.25345 0.96345 1.00374 1.05325 0.85247 0.77944 0.80461 0.76885 1.22694 1.21868 1.19440 1.19480 0.90815 0.85838 1.38256 0.92069 1.42313 1.04746 1.00663 1.86801 1.20980 0.94023 0.84905 0.96795 1.21421 0.92740 0.95644 0.85687 0.91255 1.21867 0.98324 0.93058 1.02601 1.21500 0.98339 0.97588 0.97527 1.21991 1.00064 0.96995 0.97611 1.22450 0.92271 0.84698 1.03550 1.47843 1.44183 1.25136 1.16747 1.18646 0.85233 0.82255 0.83726 1.91182 1.34661 1.35385 1.75954 1.20157 0.95725 1.01408 0.93165 1.21339 0.90787 0.96330 1.01059 1.20953 1.01576 0.98709 0.88635 1.19811 0.90334 0.99423 0.95510 1.68793 1.35806 1.11720 0.99501 1.24989 0.95744 0.91422 0.96227 1.24949 0.91604 0.93134 0.99642 1.68674 1.38551 1.11058 0.99075 1.19404 0.93232 1.01315 0.92764 1.21002 0.99758 0.96168 0.90275 0.94676 0.80104 0.96641 0.96068 0.92425 0.89797 0.89777 0.90772 0.92592 0.87873 0.89479 0.88580 0.81959 0.80990 0.75742 0.76439 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.35 13.06 21.65 0.28 -64.06 16 2 C -0.08 -5.23 5.50 84.86 0.47 -4.77 16 3 Si 0.96 50.97 29.55 68.60 2.03 52.99 16 4 H -0.30 -15.91 7.11 99.48 0.71 -15.20 16 5 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 6 H -0.27 -13.41 7.11 99.48 0.71 -12.71 16 7 C -0.21 -13.12 9.71 84.03 0.82 -12.31 16 8 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.70 -39.51 3.24 -343.45 -1.11 -40.62 16 10 C 0.16 7.18 4.87 86.38 0.42 7.60 16 11 C 0.15 4.92 2.92 44.97 0.13 5.05 16 12 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 13 C -0.12 -2.87 5.36 30.67 0.16 -2.71 16 14 C -0.11 -1.86 5.88 30.62 0.18 -1.68 16 15 C -0.13 -2.06 6.10 30.82 0.19 -1.87 16 16 C 0.09 1.87 4.84 86.51 0.42 2.29 16 17 N -0.60 -19.02 2.97 -797.56 -2.37 -21.38 16 18 C 0.52 20.62 6.71 86.79 0.58 21.20 16 19 O -0.50 -25.87 10.68 -3.88 -0.04 -25.91 16 20 C -0.10 -3.42 5.17 -20.11 -0.10 -3.52 16 21 C -0.08 -1.98 7.27 22.27 0.16 -1.82 16 22 C -0.08 -1.90 9.95 22.29 0.22 -1.68 16 23 C 0.07 1.96 6.59 40.32 0.27 2.23 16 24 N -0.44 -10.08 10.46 -187.89 -1.96 -12.04 16 25 C 0.09 1.40 11.21 85.14 0.95 2.36 16 26 C 0.08 1.45 11.22 85.14 0.95 2.40 16 27 N -0.46 -13.04 10.46 -188.11 -1.97 -15.01 16 28 C 0.05 1.73 6.58 40.26 0.27 2.00 16 29 C -0.05 -1.85 9.58 22.85 0.22 -1.63 16 30 H 0.24 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.37 21.84 7.08 -92.71 -0.66 21.19 16 32 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 33 H 0.02 1.07 6.29 -2.38 -0.01 1.06 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.09 1.48 8.07 -2.39 -0.02 1.46 16 41 H 0.10 1.84 4.68 -2.39 -0.01 1.83 16 42 H 0.16 3.50 6.37 -2.91 -0.02 3.48 16 43 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 44 H 0.23 0.93 8.06 -2.91 -0.02 0.91 16 45 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 46 H 0.12 4.80 8.03 -2.91 -0.02 4.78 16 Total: -1.00 -88.36 367.14 1.52 -86.83 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.36 Total: 26.05 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.31 Total: 13.15 kcal Atomic # 7 Polarization: -145.99 SS G_CDS: -7.13 Total: -153.12 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.04 Total: -25.91 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.03 Total: 52.99 kcal Total: -88.36 1.52 -86.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328672612.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.354 kcal (2) G-P(sol) polarization free energy of solvation -88.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds