Wall clock time and date at job start Tue Mar 31 2020 22:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35958 * 116.99988 * 2 1 4 4 C 1.38658 * 120.06141 * 0.02562 * 3 2 1 5 5 C 1.38186 * 119.96748 * 179.70180 * 4 3 2 6 6 C 1.38259 * 120.09252 * 0.54916 * 5 4 3 7 7 C 1.50705 * 119.93581 * 179.72595 * 6 5 4 8 8 C 1.50702 * 109.47082 * 269.72450 * 7 6 5 9 9 O 1.21283 * 119.99575 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00335 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99594 * 0.02562 * 10 8 7 12 12 C 1.46501 * 120.00308 * 180.02562 * 10 8 7 13 13 C 1.52995 * 109.46937 * 269.99876 * 12 10 8 14 14 H 1.08998 * 109.47344 * 305.00072 * 13 12 10 15 15 O 1.42909 * 109.47082 * 64.99870 * 13 12 10 16 16 C 1.53001 * 109.47095 * 184.99556 * 13 12 10 17 17 N 1.46499 * 109.47042 * 179.97438 * 16 13 12 18 18 C 1.36942 * 119.99863 * 180.02562 * 17 16 13 19 19 H 1.07998 * 119.99646 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99800 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00118 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99816 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47179 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47210 * 119.99522 * 22 20 18 25 25 H 1.48497 * 109.47276 * 239.99769 * 22 20 18 26 26 C 1.38255 * 120.12684 * 359.44934 * 6 5 4 27 27 C 1.38329 * 120.03153 * 0.27368 * 26 6 5 28 28 F 1.35099 * 120.04964 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.47179 * 59.99794 * 1 2 3 30 30 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47077 * 299.99739 * 1 2 3 32 32 H 1.08002 * 120.01666 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.95626 * 180.29466 * 5 4 3 34 34 H 1.09000 * 109.47071 * 149.72425 * 7 6 5 35 35 H 1.08996 * 109.47036 * 29.72276 * 7 6 5 36 36 H 1.09001 * 109.47060 * 90.00388 * 11 10 8 37 37 H 1.09004 * 109.47073 * 209.99877 * 11 10 8 38 38 H 1.09000 * 109.47212 * 329.99960 * 11 10 8 39 39 H 1.09000 * 109.46877 * 29.99967 * 12 10 8 40 40 H 1.09000 * 109.47251 * 150.00072 * 12 10 8 41 41 H 0.96701 * 113.99408 * 59.99630 * 15 13 12 42 42 H 1.08998 * 109.47446 * 300.00454 * 16 13 12 43 43 H 1.08999 * 109.46643 * 60.00807 * 16 13 12 44 44 H 0.97000 * 120.00597 * 0.02562 * 17 16 13 45 45 H 0.97000 * 119.99619 * 180.02562 * 21 20 18 46 46 H 1.08008 * 119.98270 * 180.25132 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0068 6 6 3.3023 3.6777 0.0010 7 6 3.9850 5.0212 0.0016 8 6 4.2125 5.4697 -1.4191 9 8 3.8550 4.7676 -2.3412 10 7 4.8122 6.6513 -1.6649 11 6 5.2435 7.4996 -0.5510 12 6 5.0329 7.0875 -3.0460 13 6 6.3959 6.5864 -3.5274 14 1 7.1705 6.9205 -2.8371 15 8 6.3874 5.1583 -3.5787 16 6 6.6809 7.1452 -4.9229 17 7 7.9863 6.6658 -5.3837 18 6 8.4573 7.0388 -6.6143 19 1 7.8662 7.6860 -7.2452 20 6 9.6940 6.5842 -7.0510 21 7 10.4141 5.7950 -6.2822 22 14 10.3362 7.0923 -8.7300 23 1 9.3436 7.9759 -9.3929 24 1 11.6194 7.8220 -8.5690 25 1 10.5557 5.8827 -9.5629 26 6 4.0579 2.5199 0.0005 27 6 3.4333 1.2856 0.0000 28 9 4.1713 0.1540 -0.0010 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2137 2.3200 0.0005 33 1 1.3342 4.5115 0.0120 34 1 4.9430 4.9418 0.5154 35 1 3.3562 5.7480 0.5157 36 1 6.2669 7.2448 -0.2753 37 1 5.1984 8.5461 -0.8526 38 1 4.5863 7.3390 0.3036 39 1 4.2495 6.6803 -3.6851 40 1 5.0094 8.1763 -3.0913 41 1 5.7211 4.7902 -4.1751 42 1 5.9064 6.8111 -5.6133 43 1 6.6875 8.2344 -4.8837 44 1 8.5171 6.0843 -4.8171 45 1 11.2785 5.4777 -6.5874 46 1 5.1364 2.5791 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332536118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:02 Heat of formation + Delta-G solvation = -122.952058 kcal Electronic energy + Delta-G solvation = -29279.926432 eV Core-core repulsion = 24892.339172 eV Total energy + Delta-G solvation = -4387.587260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.87298 -40.53465 -39.83809 -37.98820 -37.07711 -35.24566 -33.93581 -32.53726 -31.24410 -30.97697 -29.64111 -28.39251 -27.00123 -26.84215 -24.97746 -23.03956 -22.83853 -21.79726 -21.08060 -19.33079 -18.55600 -17.28752 -17.24066 -17.11292 -16.98117 -16.43656 -16.35326 -15.84521 -15.24466 -15.15609 -15.08336 -14.95386 -14.51559 -14.40782 -14.19925 -13.89858 -13.51209 -13.33244 -13.02291 -12.93934 -12.68483 -12.55969 -12.47993 -12.32296 -12.17521 -11.97913 -11.82337 -11.44306 -11.38381 -11.34599 -10.90179 -10.81022 -10.61100 -10.09249 -9.89539 -9.73640 -9.54974 -9.14108 -8.86939 -8.49230 -8.35537 -6.88254 -5.71635 -3.00968 0.91843 0.95395 2.64211 2.82675 2.90981 3.35627 3.45648 3.50593 3.53396 3.99675 4.33238 4.37716 4.49448 4.59721 4.62861 4.77378 4.83991 4.85236 4.91664 4.97553 5.05547 5.06929 5.11344 5.19072 5.25962 5.32106 5.38479 5.51651 5.56842 5.63198 5.68255 5.76322 5.79954 5.85356 6.05079 6.20161 6.27714 6.37297 6.46000 6.55529 6.77988 6.98322 7.32387 7.72174 8.18676 8.26252 8.46851 9.57997 10.16643 10.52354 11.50821 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.002203 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.401918 B =12705.344262 C =13746.913656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.093 3.907 4 C -0.181 4.181 5 C -0.075 4.075 6 C -0.071 4.071 7 C -0.097 4.097 8 C 0.518 3.482 9 O -0.523 6.523 10 N -0.612 5.612 11 C 0.075 3.925 12 C 0.086 3.914 13 C 0.086 3.914 14 H 0.094 0.906 15 O -0.546 6.546 16 C 0.125 3.875 17 N -0.725 5.725 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.097 4.097 27 C 0.073 3.927 28 F -0.132 7.132 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.374 0.626 42 H 0.020 0.980 43 H 0.024 0.976 44 H 0.389 0.611 45 H 0.254 0.746 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.507 -2.007 20.796 30.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.047 3.953 4 C -0.200 4.200 5 C -0.094 4.094 6 C -0.072 4.072 7 C -0.137 4.137 8 C 0.306 3.694 9 O -0.398 6.398 10 N -0.346 5.346 11 C -0.068 4.068 12 C -0.037 4.037 13 C 0.025 3.975 14 H 0.112 0.888 15 O -0.351 6.351 16 C -0.004 4.004 17 N -0.370 5.370 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.116 4.116 27 C 0.053 3.947 28 F -0.111 7.111 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.221 0.779 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.223 0.777 45 H 0.064 0.936 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.101 -2.474 20.567 30.292 hybrid contribution 0.138 0.150 -1.189 1.206 sum -21.963 -2.325 19.378 29.382 Atomic orbital electron populations 1.23107 0.78008 1.04231 1.01478 1.86139 1.21666 1.25888 1.88770 1.18996 0.90818 0.85600 0.99923 1.21041 1.00128 0.91371 1.07414 1.20795 0.93663 0.97263 0.97648 1.19003 0.93159 0.93410 1.01655 1.20657 1.02757 0.94728 0.95523 1.20337 0.77443 0.80642 0.91001 1.90708 1.50197 1.52743 1.46118 1.47721 1.59915 1.19938 1.07034 1.21855 1.00410 0.95266 0.89280 1.22275 0.99198 0.99972 0.82303 1.22471 0.95295 0.82251 0.97434 0.88806 1.86545 1.61311 1.18542 1.68710 1.21236 0.90226 0.96598 0.92292 1.42251 1.16539 1.59133 1.19068 1.19267 1.00332 1.24239 0.93445 0.91244 1.24770 0.97469 1.00236 0.98553 1.69696 1.13233 1.38003 1.36828 0.86114 0.78540 0.77622 0.83881 1.20597 1.21881 1.21839 1.20881 1.01146 0.89715 0.99831 1.16886 0.85896 0.82996 1.08945 1.91508 1.76398 1.48907 1.94254 0.92364 0.87998 0.92508 0.84542 0.85258 0.87706 0.87923 0.92245 0.90840 0.91117 0.89557 0.89763 0.77868 0.96243 0.95880 0.77661 0.93559 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.44 10.36 -19.61 -0.20 -3.64 16 3 C 0.09 1.07 6.69 -39.18 -0.26 0.81 16 4 C -0.18 -1.65 9.04 -39.45 -0.36 -2.01 16 5 C -0.08 -0.68 9.69 -39.59 -0.38 -1.06 16 6 C -0.07 -0.73 4.37 -104.61 -0.46 -1.19 16 7 C -0.10 -0.81 4.38 -29.03 -0.13 -0.94 16 8 C 0.52 6.34 7.29 -10.99 -0.08 6.26 16 9 O -0.52 -8.46 14.59 -2.16 -0.03 -8.49 16 10 N -0.61 -6.72 2.86 -181.57 -0.52 -7.24 16 11 C 0.08 0.53 10.29 59.85 0.62 1.14 16 12 C 0.09 1.09 5.16 -4.04 -0.02 1.07 16 13 C 0.09 1.44 3.30 -26.73 -0.09 1.36 16 14 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 15 O -0.55 -10.52 11.95 -42.94 -0.51 -11.03 16 16 C 0.13 2.53 5.92 -4.04 -0.02 2.51 16 17 N -0.73 -19.12 5.49 -59.91 -0.33 -19.45 16 18 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -29.16 13.06 55.49 0.72 -28.44 16 22 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 C -0.10 -1.13 9.67 -39.54 -0.38 -1.52 16 27 C 0.07 0.94 7.31 -39.30 -0.29 0.65 16 28 F -0.13 -1.90 17.11 2.25 0.04 -1.86 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.14 0.86 6.30 -52.49 -0.33 0.53 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.10 0.73 8.05 -51.93 -0.42 0.32 16 35 H 0.10 0.54 7.34 -51.93 -0.38 0.16 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 38 H 0.07 0.31 6.44 -51.93 -0.33 -0.02 16 39 H 0.09 1.18 7.42 -51.93 -0.39 0.80 16 40 H 0.08 0.88 7.89 -51.93 -0.41 0.47 16 41 H 0.37 6.87 8.75 45.56 0.40 7.27 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.39 11.09 7.54 -40.82 -0.31 10.78 16 45 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -37.44 390.64 -6.96 -44.39 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.88 Total: 11.36 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.11 Total: 0.59 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.12 Total: -55.13 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.75 Total: -23.16 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.44 -6.96 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332536118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.558 kcal (2) G-P(sol) polarization free energy of solvation -37.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds